Gene ontology annotations for YIPF4
Experiment description of studies that identified YIPF4 in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
834
MISEV standards
✔
EM
Biophysical techniques
✔
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35333565
Organism
Homo sapiens
Experiment description
LAMP2A regulates the loading of proteins into exosomes
Authors
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name
Sci Adv
Publication year
2022
Sample
Retinal pigment epithelial cells
Sample name
ARPE-19
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
6
Experiment ID
835
MISEV standards
✔
EM
Biophysical techniques
✔
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35333565
Organism
Homo sapiens
Experiment description
LAMP2A regulates the loading of proteins into exosomes
Authors
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name
Sci Adv
Publication year
2022
Sample
Retinal pigment epithelial cells
Sample name
ARPE-19
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
Protein-protein interactions for YIPF4
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
PTGIR
Affinity Capture-MS
Homo sapiens
2
SLC30A8
Two-hybrid
Homo sapiens
3
SLC17A2
Affinity Capture-MS
Homo sapiens
4
SLC35A4
Two-hybrid
Homo sapiens
5
VIPR2
Affinity Capture-MS
Homo sapiens
6
ATP13A3
79572
Affinity Capture-MS
Homo sapiens
7
NAT8
Two-hybrid
Homo sapiens
8
TMEM63B
55362
Affinity Capture-MS
Homo sapiens
9
UNK
Affinity Capture-RNA
Homo sapiens
10
IER3IP1
51124
Two-hybrid
Homo sapiens
11
FCER1G
2207
Two-hybrid
Homo sapiens
12
ERGIC3
51614
Two-hybrid
Homo sapiens
13
TMEM14B
Two-hybrid
Homo sapiens
14
CHRM4
Affinity Capture-MS
Homo sapiens
15
REEP4
Two-hybrid
Homo sapiens
16
EBP
Two-hybrid
Homo sapiens
17
CD79A
Two-hybrid
Homo sapiens
18
ARL6IP1
23204
Two-hybrid
Homo sapiens
19
FSHR
Affinity Capture-MS
Homo sapiens
20
SLC22A9
Affinity Capture-MS
Homo sapiens
21
RNF5
Two-hybrid
Homo sapiens
22
CHRM3
1131
Affinity Capture-MS
Homo sapiens
23
GPR152
Two-hybrid
Homo sapiens
24
GPR52
Affinity Capture-MS
Homo sapiens
25
GPR42
Two-hybrid
Homo sapiens
26
TSNARE1
Two-hybrid
Homo sapiens
27
FAM134C
162427
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
28
HSD17B13
Two-hybrid
Homo sapiens
29
CNR2
Two-hybrid
Homo sapiens
30
YIF1A
10897
Two-hybrid
Homo sapiens
31
SPPL2B
56928
Affinity Capture-MS
Homo sapiens
32
SLC10A1
Two-hybrid
Homo sapiens
33
IPPK
Affinity Capture-MS
Homo sapiens
34
TVP23B
Two-hybrid
Homo sapiens
35
PTGFR
5737
Affinity Capture-MS
Homo sapiens
36
TMEM63A
9725
Affinity Capture-MS
Homo sapiens
37
YIPF3
25844
Two-hybrid
Homo sapiens
Two-hybrid
Homo sapiens
Affinity Capture-MS
Homo sapiens
Two-hybrid
Homo sapiens
38
AP3B1
8546
Co-fractionation
Homo sapiens
39
RNF185
Two-hybrid
Homo sapiens
40
FATE1
Two-hybrid
Homo sapiens
Two-hybrid
Homo sapiens
41
Yipf4
Affinity Capture-MS
Mus musculus
42
HIATL1
84641
Two-hybrid
Homo sapiens
43
SCN3B
Two-hybrid
Homo sapiens
44
ZDHHC15
158866
Two-hybrid
Homo sapiens
45
TMEM56
Two-hybrid
Homo sapiens
46
KCNA5
Affinity Capture-MS
Homo sapiens
47
SLC7A1
6541
Affinity Capture-MS
Homo sapiens
Two-hybrid
Homo sapiens
View the network
image/svg+xml
Pathways in which YIPF4 is involved
No pathways found