Gene ontology annotations for SVIP
Experiment description of studies that identified SVIP in exosomes
1
Experiment ID
79
MISEV standards
✘
Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20458337
Organism
Homo sapiens
Experiment description
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis - Sample 1
Authors
"Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name
ICB
Publication year
2010
Sample
B cells
Sample name
RN (HLA-DR15)
Isolation/purification methods
Differential centrifugation Sucrose density gradient Immunobeads (MHC Class II)
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [FT-ICR] Western blotting
2
Experiment ID
81
MISEV standards
✘
Biophysical techniques
✔
CD81|MHCII
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20458337
Organism
Homo sapiens
Experiment description
MHC class II-associated proteins in B-cell exosomes and potential functional implications for exosome biogenesis - Sample 3
Authors
"Buschow SI, van Balkom BW, Aalberts M, Heck AJ, Wauben M, Stoorvogel W."
Journal name
ICB
Publication year
2010
Sample
B cells
Sample name
RN (HLA-DR15)
Isolation/purification methods
Differential centrifugation Sucrose density gradient Immunobeads (MHC Class II)
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [FT-ICR] Western blotting
3
Experiment ID
207
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23161513
Organism
Homo sapiens
Experiment description
Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors
"Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name
Mol Cell Proteomics
Publication year
2012
Sample
Colorectal cancer cells
Sample name
DKO-1
Isolation/purification methods
Differential centrifugation Filtration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
4
Experiment ID
208
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23161513
Organism
Homo sapiens
Experiment description
Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors
"Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name
Mol Cell Proteomics
Publication year
2012
Sample
Colorectal cancer cells
Sample name
Dks-8
Isolation/purification methods
Differential centrifugation Filtration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
5
Experiment ID
209
MISEV standards
✘
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23161513
Organism
Homo sapiens
Experiment description
Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors
"Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name
Mol Cell Proteomics
Publication year
2012
Sample
Colorectal cancer cells
Sample name
DLD-1
Isolation/purification methods
Differential centrifugation Filtration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for SVIP
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
DUSP22
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
2
UFD1L
7353
Co-fractionation
Homo sapiens
3
NPLOC4
55666
Co-fractionation
Homo sapiens
Affinity Capture-Western
Homo sapiens
4
TFRC
7037
Co-fractionation
Homo sapiens
5
CANX
821
Co-fractionation
Homo sapiens
6
HOXB5
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
7
DMC1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
8
LAMP1
3916
Co-localization
Homo sapiens
9
HSP90AB1
3326
Cross-Linking-MS (XL-MS)
Homo sapiens
10
AMFR
267
Co-fractionation
Homo sapiens
Affinity Capture-Western
Homo sapiens
11
MCAM
4162
Proximity Label-MS
Homo sapiens
12
GJB7
Affinity Capture-MS
Homo sapiens
13
BTBD2
Affinity Capture-MS
Homo sapiens
14
VCP
7415
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
Protein-peptide
Homo sapiens
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
Affinity Capture-Western
Homo sapiens
Co-localization
Homo sapiens
Co-crystal Structure
Homo sapiens
Reconstituted Complex
Homo sapiens
15
GOLGA1
Co-fractionation
Homo sapiens
16
SYVN1
84447
Co-fractionation
Homo sapiens
Affinity Capture-Western
Homo sapiens
17
STX7
8417
Affinity Capture-MS
Homo sapiens
18
ATP6V1B1
525
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
19
CPA5
Affinity Capture-MS
Homo sapiens
20
SLC16A14
Affinity Capture-MS
Homo sapiens
21
VIMP
55829
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
22
VCPIP1
80124
Affinity Capture-MS
Homo sapiens
23
MGST3
4259
Affinity Capture-MS
Homo sapiens
24
UBXN6
80700
Two-hybrid
Homo sapiens
25
DERL1
79139
Co-fractionation
Homo sapiens
Affinity Capture-Western
Homo sapiens
26
TACC3
Affinity Capture-MS
Homo sapiens
27
TMEM185A
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which SVIP is involved