Gene ontology annotations for VIPAS39
Experiment description of studies that identified VIPAS39 in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Homo sapiens
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Mesenchymal stem cells
Sample name
UCMSC
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
Protein-protein interactions for VIPAS39
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
COLGALT2
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
2
CHMP3
51652
Affinity Capture-MS
Homo sapiens
3
VPS41
27072
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
4
PLEKHA4
57664
Affinity Capture-MS
Homo sapiens
5
LYG2
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
6
PRKD2
25865
Affinity Capture-MS
Homo sapiens
7
CUL3
8452
Affinity Capture-MS
Homo sapiens
8
LAMTOR1
55004
Proximity Label-MS
Homo sapiens
9
ATG9A
79065
Proximity Label-MS
Homo sapiens
10
PIP
5304
Affinity Capture-MS
Homo sapiens
11
YWHAB
7529
Affinity Capture-MS
Homo sapiens
12
WASF2
10163
Affinity Capture-MS
Homo sapiens
13
MATN4
8785
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
14
LAMP1
3916
Proximity Label-MS
Homo sapiens
15
RABIF
Affinity Capture-MS
Homo sapiens
16
Vps39
Affinity Capture-Western
Mus musculus
17
Vps11
Affinity Capture-Western
Mus musculus
Affinity Capture-Western
Mus musculus
18
KIF1B
23095
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
19
Vps18
Affinity Capture-Western
Mus musculus
Affinity Capture-Western
Mus musculus
Co-fractionation
Mus musculus
20
VPS33A
65082
Affinity Capture-Western
Homo sapiens
21
RAB4A
5867
Proximity Label-MS
Homo sapiens
22
Vps16
Affinity Capture-Western
Mus musculus
Affinity Capture-Western
Mus musculus
Co-fractionation
Mus musculus
23
PLOD3
8985
Affinity Capture-MS
Homo sapiens
24
FIS1
51024
Proximity Label-MS
Homo sapiens
25
MTMR7
Affinity Capture-MS
Homo sapiens
26
OGT
8473
Reconstituted Complex
Homo sapiens
27
RAB7A
7879
Proximity Label-MS
Homo sapiens
28
RAB11A
8766
Proximity Label-MS
Homo sapiens
29
CCDC22
28952
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
30
VPS39
23339
Co-fractionation
Homo sapiens
31
VPS33B
26276
Two-hybrid
Homo sapiens
Two-hybrid
Homo sapiens
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
Co-fractionation
Homo sapiens
Affinity Capture-Western
Homo sapiens
Two-hybrid
Homo sapiens
32
RHOT2
89941
Proximity Label-MS
Homo sapiens
33
STX6
10228
Proximity Label-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which VIPAS39 is involved
No pathways found