Gene description for Psmd6
Gene name proteasome (prosome, macropain) 26S subunit, non-ATPase, 6
Gene symbol Psmd6
Other names/aliases 2400006A19Rik
Species Mus musculus
 Database cross references - Psmd6
ExoCarta ExoCarta_66413
Vesiclepedia VP_66413
Entrez Gene 66413
UniProt Q99JI4  
 Psmd6 identified in sEVs derived from the following tissue/cell type
Colon cancer cells 37309723    
T-cell lymphoma cells 37309723    
 Gene ontology annotations for Psmd6
Biological Process
    proteasome-mediated ubiquitin-dependent protein catabolic process GO:0043161 IBA
Subcellular Localization
    proteasome complex GO:0000502 ISO
    proteasome regulatory particle GO:0005838 IBA
    proteasome accessory complex GO:0022624 IDA
 Experiment description of studies that identified Psmd6 in sEVs
1
Experiment ID 907
MISEV standards
✔
EM
Biophysical techniques
✔
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
✔
HSPA5
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 37309723    
Organism Mus musculus
Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name Proteomics
Publication year 2023
Sample Colon cancer cells
Sample name C26
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 908
MISEV standards
✔
EM
Biophysical techniques
✔
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
✔
HSPA5
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 37309723    
Organism Mus musculus
Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name Proteomics
Publication year 2023
Sample T-cell lymphoma cells
Sample name EL4
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
 Protein-protein interactions for Psmd6
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Psmb7 19177
Co-fractionation Mus musculus
2 Psmc6 67089
Co-fractionation Mus musculus
3 Ubc  
Reconstituted Complex Mus musculus
4 Psme2 19188
Co-fractionation Mus musculus
5 Tnk2  
Affinity Capture-Western Mus musculus
6 Zfand5  
Co-fractionation Mus musculus
7 RSF1  
Affinity Capture-MS Homo sapiens
8 Psmd2 21762
Co-fractionation Mus musculus
9 Psmc3 19182
Co-fractionation Mus musculus
10 PSMC3 5702
Affinity Capture-MS Homo sapiens
11 Psma2 19166
Co-fractionation Mus musculus
12 Psmb6 19175
Co-fractionation Mus musculus
13 Psmb4 19172
Co-fractionation Mus musculus
14 Psmc2 19181
Co-fractionation Mus musculus
15 Tcp1 21454
Co-fractionation Mus musculus
16 Psmd4  
Co-fractionation Mus musculus
17 Psma3 19167
Co-fractionation Mus musculus
18 NUP188 23511
Affinity Capture-MS Homo sapiens
19 PSMD8 5714
Affinity Capture-MS Homo sapiens
20 PSMD5 5711
Affinity Capture-MS Homo sapiens
21 USP14 9097
Affinity Capture-MS Homo sapiens
22 Psmb1 19170
Co-fractionation Mus musculus
23 Atxn1  
Affinity Capture-MS Mus musculus
24 Kctd13  
Affinity Capture-MS Mus musculus
25 Eif4e  
Co-fractionation Mus musculus
26 UBE3A 7337
Affinity Capture-MS Homo sapiens
27 Vcp 269523
Co-fractionation Mus musculus
28 PSMD4 5710
Affinity Capture-MS Homo sapiens
29 Psmd14 59029
Co-fractionation Mus musculus
30 PSMD14 10213
Affinity Capture-MS Homo sapiens
31 PSMD11 5717
Affinity Capture-MS Homo sapiens
32 PSMD10 5716
Affinity Capture-MS Homo sapiens
33 Huwe1  
Co-fractionation Mus musculus
34 Psmc5 19184
Co-fractionation Mus musculus
35 PAAF1 80227
Affinity Capture-MS Homo sapiens
36 PSMD7 5713
Affinity Capture-MS Homo sapiens
37 PSMC1 5700
Affinity Capture-MS Homo sapiens
38 Psmc1 19179
Co-fractionation Mus musculus
39 Mettl21e  
Affinity Capture-MS Mus musculus
40 Psmd1 70247
Co-fractionation Mus musculus
41 Tmem173  
Proximity Label-MS Mus musculus
42 Psmd13 23997
Co-fractionation Mus musculus
43 Psmd8 57296
Co-fractionation Mus musculus
44 Psmd7 17463
Co-fractionation Mus musculus
45 UCHL5 51377
Affinity Capture-MS Homo sapiens
46 Ubac1  
Co-fractionation Mus musculus
47 PSMD2 5708
Affinity Capture-MS Homo sapiens
48 Psmc4 23996
Co-fractionation Mus musculus
49 MIF4GD 57409
Affinity Capture-MS Homo sapiens
50 Nanog  
Affinity Capture-MS Mus musculus
51 Psmd3 22123
Co-fractionation Mus musculus
52 Uchl5 56207
Co-fractionation Mus musculus
53 Cblb 208650
Affinity Capture-Western Mus musculus
54 PSMC5 5705
Affinity Capture-MS Homo sapiens
55 Psme1 19186
Co-fractionation Mus musculus
56 TXNL1 9352
Affinity Capture-MS Homo sapiens
57 PITPNC1  
Affinity Capture-MS Homo sapiens
58 PSMD12 5718
Affinity Capture-MS Homo sapiens
59 Eed  
Affinity Capture-MS Mus musculus
60 PSMC6 5706
Affinity Capture-MS Homo sapiens
61 PSMD1 5707
Affinity Capture-MS Homo sapiens
62 PSMC4 5704
Affinity Capture-MS Homo sapiens
63 PSMC2 5701
Affinity Capture-MS Homo sapiens
64 PRDX3 10935
Affinity Capture-MS Homo sapiens
65 CLINT1 9685
Affinity Capture-MS Homo sapiens
66 Usp15  
Affinity Capture-MS Mus musculus
67 NCOA4 8031
Affinity Capture-MS Homo sapiens
68 Usp14 59025
Co-fractionation Mus musculus
69 ADRM1 11047
Affinity Capture-MS Homo sapiens
70 PSMD3 5709
Affinity Capture-MS Homo sapiens
71 Psmd11 69077
Co-fractionation Mus musculus
72 PSMD13 5719
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which Psmd6 is involved
PathwayEvidenceSource
ABC-family proteins mediated transport IEA Reactome
Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins IEA Reactome
Activation of NF-kappaB in B cells IEA Reactome
Adaptive Immune System IEA Reactome
Antigen processing-Cross presentation IEA Reactome
Antigen processing: Ubiquitination & Proteasome degradation IEA Reactome
APC/C-mediated degradation of cell cycle proteins IEA Reactome
APC/C:Cdc20 mediated degradation of mitotic proteins IEA Reactome
APC/C:Cdc20 mediated degradation of Securin IEA Reactome
APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1 IEA Reactome
APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint IEA Reactome
Assembly of the pre-replicative complex IEA Reactome
Asymmetric localization of PCP proteins IEA Reactome
AUF1 (hnRNP D0) binds and destabilizes mRNA IEA Reactome
Autodegradation of Cdh1 by Cdh1:APC/C IEA Reactome
Autodegradation of the E3 ubiquitin ligase COP1 IEA Reactome
Beta-catenin independent WNT signaling IEA Reactome
C-type lectin receptors (CLRs) IEA Reactome
Cdc20:Phospho-APC/C mediated degradation of Cyclin A IEA Reactome
CDK-mediated phosphorylation and removal of Cdc6 IEA Reactome
Cell Cycle IEA Reactome
Cell Cycle Checkpoints IEA Reactome
Cell Cycle, Mitotic IEA Reactome
Cellular response to chemical stress IEA Reactome
Cellular response to hypoxia IEA Reactome
Cellular responses to stimuli IEA Reactome
Cellular responses to stress IEA Reactome
Class I MHC mediated antigen processing & presentation IEA Reactome
CLEC7A (Dectin-1) signaling IEA Reactome
Cross-presentation of soluble exogenous antigens (endosomes) IEA Reactome
Cyclin A:Cdk2-associated events at S phase entry IEA Reactome
Cyclin E associated events during G1/S transition IEA Reactome
Cytokine Signaling in Immune system IEA Reactome
Dectin-1 mediated noncanonical NF-kB signaling IEA Reactome
Degradation of AXIN IEA Reactome
Degradation of beta-catenin by the destruction complex IEA Reactome
Degradation of DVL IEA Reactome
Degradation of GLI1 by the proteasome IEA Reactome
Deubiquitination IEA Reactome
DNA Replication IEA Reactome
DNA Replication Pre-Initiation IEA Reactome
Downstream signaling events of B Cell Receptor (BCR) IEA Reactome
Downstream TCR signaling IEA Reactome
FBXL7 down-regulates AURKA during mitotic entry and in early mitosis IEA Reactome
Fc epsilon receptor (FCERI) signaling IEA Reactome
FCERI mediated NF-kB activation IEA Reactome
G1/S DNA Damage Checkpoints IEA Reactome
G1/S Transition IEA Reactome
G2/M Checkpoints IEA Reactome
G2/M Transition IEA Reactome
Gene expression (Transcription) IEA Reactome
Generic Transcription Pathway IEA Reactome
GLI3 is processed to GLI3R by the proteasome IEA Reactome
GSK3B and BTRC:CUL1-mediated-degradation of NFE2L2 IEA Reactome
Hedgehog 'off' state IEA Reactome
Hedgehog 'on' state IEA Reactome
Hedgehog ligand biogenesis IEA Reactome
Immune System IEA Reactome
Innate Immune System IEA Reactome
Interleukin-1 family signaling IEA Reactome
Interleukin-1 signaling IEA Reactome
Intracellular signaling by second messengers IEA Reactome
KEAP1-NFE2L2 pathway IEA Reactome
M Phase IEA Reactome
MAPK family signaling cascades IEA Reactome
MAPK1/MAPK3 signaling IEA Reactome
MAPK6/MAPK4 signaling IEA Reactome
Metabolism IEA Reactome
Metabolism of amino acids and derivatives IEA Reactome
Metabolism of polyamines IEA Reactome
Metabolism of proteins IEA Reactome
Metabolism of RNA IEA Reactome
Mitotic Anaphase IEA Reactome
Mitotic G1 phase and G1/S transition IEA Reactome
Mitotic G2-G2/M phases IEA Reactome
Mitotic Metaphase and Anaphase IEA Reactome
Neddylation IEA Reactome
Neutrophil degranulation IEA Reactome
NIK-->noncanonical NF-kB signaling IEA Reactome
Nuclear events mediated by NFE2L2 IEA Reactome
Orc1 removal from chromatin IEA Reactome
Oxygen-dependent proline hydroxylation of Hypoxia-inducible Factor Alpha IEA Reactome
p53-Dependent G1 DNA Damage Response IEA Reactome
p53-Dependent G1/S DNA damage checkpoint IEA Reactome
p53-Independent DNA Damage Response IEA Reactome
p53-Independent G1/S DNA damage checkpoint IEA Reactome
PCP/CE pathway IEA Reactome
PIP3 activates AKT signaling IEA Reactome
Post-translational protein modification IEA Reactome
Proteasome assembly IEA Reactome
PTEN Regulation IEA Reactome
RAF/MAP kinase cascade IEA Reactome
Regulation of mitotic cell cycle IEA Reactome
Regulation of mRNA stability by proteins that bind AU-rich elements IEA Reactome
Regulation of ornithine decarboxylase (ODC) IEA Reactome
Regulation of PTEN stability and activity IEA Reactome
Regulation of RAS by GAPs IEA Reactome
Regulation of RUNX2 expression and activity IEA Reactome
Regulation of RUNX3 expression and activity IEA Reactome
RNA Polymerase II Transcription IEA Reactome
RUNX1 regulates transcription of genes involved in differentiation of HSCs IEA Reactome
S Phase IEA Reactome
SCF(Skp2)-mediated degradation of p27/p21 IEA Reactome
Separation of Sister Chromatids IEA Reactome
Signal Transduction IEA Reactome
Signaling by Hedgehog IEA Reactome
Signaling by Interleukins IEA Reactome
Signaling by the B Cell Receptor (BCR) IEA Reactome
Signaling by WNT IEA Reactome
Stabilization of p53 IEA Reactome
Switching of origins to a post-replicative state IEA Reactome
Synthesis of DNA IEA Reactome
TCF dependent signaling in response to WNT IEA Reactome
TCR signaling IEA Reactome
The role of GTSE1 in G2/M progression after G2 checkpoint IEA Reactome
TNFR2 non-canonical NF-kB pathway IEA Reactome
Transcriptional regulation by RUNX1 IEA Reactome
Transcriptional regulation by RUNX2 IEA Reactome
Transcriptional regulation by RUNX3 IEA Reactome
Transport of small molecules IEA Reactome
Ub-specific processing proteases IEA Reactome
Ubiquitin Mediated Degradation of Phosphorylated Cdc25A IEA Reactome
Ubiquitin-dependent degradation of Cyclin D IEA Reactome
UCH proteinases IEA Reactome





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