Gene description for Pdlim5
Gene name PDZ and LIM domain 5
Gene symbol Pdlim5
Other names/aliases 1110001A05Rik
AI987914
C87059
Enh
Enh1
Enh2
Enh3
LIM
Species Mus musculus
 Database cross references - Pdlim5
ExoCarta ExoCarta_56376
Vesiclepedia VP_56376
Entrez Gene 56376
UniProt Q8CI51  
 Pdlim5 identified in exosomes derived from the following tissue/cell type
Colon cancer cells 37309723    
T-cell lymphoma cells 37309723    
 Gene ontology annotations for Pdlim5
Molecular Function
    actin binding GO:0003779 IBA
    actin binding GO:0003779 ISO
    protein kinase C binding GO:0005080 ISO
    protein binding GO:0005515 IPI
    actinin binding GO:0042805 ISO
    metal ion binding GO:0046872 IEA
    muscle alpha-actinin binding GO:0051371 IBA
Biological Process
    heart development GO:0007507 IBA
    actin cytoskeleton organization GO:0030036 IBA
    regulation of synapse assembly GO:0051963 ISO
    regulation of synapse assembly GO:0051963 ISS
    regulation of dendritic spine morphogenesis GO:0061001 ISO
    regulation of dendritic spine morphogenesis GO:0061001 ISS
    cell growth involved in cardiac muscle cell development GO:0061049 ISO
    muscle structure development GO:0061061 IBA
Subcellular Localization
    stress fiber GO:0001725 IBA
    cytosol GO:0005829 ISO
    cytosol GO:0005829 ISS
    adherens junction GO:0005912 IBA
    postsynaptic density GO:0014069 ISO
    postsynaptic density GO:0014069 ISS
    actin cytoskeleton GO:0015629 ISO
    membrane GO:0016020 ISO
    Z disc GO:0030018 IBA
    Z disc GO:0030018 IDA
    filamentous actin GO:0031941 IBA
    cell projection GO:0042995 IEA
    presynapse GO:0098793 IEA
 Experiment description of studies that identified Pdlim5 in exosomes
1
Experiment ID 907
MISEV standards
EM
Biophysical techniques
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
HSPA5
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 37309723    
Organism Mus musculus
Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name Proteomics
Publication year 2023
Sample Colon cancer cells
Sample name C26
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 908
MISEV standards
EM
Biophysical techniques
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
HSPA5
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 37309723    
Organism Mus musculus
Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name Proteomics
Publication year 2023
Sample T-cell lymphoma cells
Sample name EL4
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
 Protein-protein interactions for Pdlim5
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Ablim1  
Co-fractionation Mus musculus
2 Tpm1 22003
Affinity Capture-Western Mus musculus
3 AKAP12 9590
Affinity Capture-MS Homo sapiens
4 Slc26a7  
Co-fractionation Mus musculus
5 Strip2  
Co-fractionation Mus musculus
6 Prickle1 106042
Co-fractionation Mus musculus
7 Exoc8  
Co-fractionation Mus musculus
8 Arhgap19  
Co-fractionation Mus musculus
9 Spopl  
Co-fractionation Mus musculus
10 Tmem173  
Proximity Label-MS Mus musculus
11 Gnai3 14679
Co-fractionation Mus musculus
12 Rapgef2  
Co-fractionation Mus musculus
13 Slc7a2  
Co-fractionation Mus musculus
14 Arhgap35  
Co-fractionation Mus musculus
15 Ngef  
Co-fractionation Mus musculus
16 MRRF  
Affinity Capture-MS Homo sapiens
17 TUBGCP6 85378
Affinity Capture-MS Homo sapiens
18 Ralbp1  
Co-fractionation Mus musculus
19 Pde6b  
Co-fractionation Mus musculus
20 Chn2  
Co-fractionation Mus musculus
21 PSMD5 5711
Affinity Capture-MS Homo sapiens
22 Ugcg  
Co-fractionation Mus musculus
23 MRPL4 51073
Affinity Capture-MS Homo sapiens
24 Rapgef4  
Co-fractionation Mus musculus
25 Vcl 22330
Affinity Capture-Western Mus musculus
26 GLT8D1 55830
Affinity Capture-MS Homo sapiens
27 Tpm2  
Affinity Capture-Western Mus musculus
28 KIFC1 3833
Affinity Capture-MS Homo sapiens
29 Fgd4  
Co-fractionation Mus musculus
30 IMPACT 55364
Affinity Capture-MS Homo sapiens
31 DLGAP4 22839
Affinity Capture-MS Homo sapiens
32 NUDT18  
Affinity Capture-MS Homo sapiens
33 Dnmbp  
Co-fractionation Mus musculus
34 Cyp2a12  
Co-fractionation Mus musculus
35 Osbpl10  
Co-fractionation Mus musculus
36 Lman1l  
Co-fractionation Mus musculus
37 Arhgap21  
Co-fractionation Mus musculus
38 Akap13  
Co-fractionation Mus musculus
39 Arhgap26  
Co-fractionation Mus musculus
40 Arhgef2  
Co-fractionation Mus musculus
41 Acta2 11475
Affinity Capture-Western Mus musculus
42 Lpxn  
Co-fractionation Mus musculus
43 Sos1  
Co-fractionation Mus musculus
44 Prex1  
Co-fractionation Mus musculus
45 Suv420h1  
Co-fractionation Mus musculus
46 Dab2ip  
Co-fractionation Mus musculus
47 TUBB2A 7280
Affinity Capture-MS Homo sapiens
48 Klhl7  
Co-fractionation Mus musculus
49 Prickle2  
Co-fractionation Mus musculus
50 Sorbs2  
Co-fractionation Mus musculus
51 SF1 7536
Affinity Capture-MS Homo sapiens
52 PDE4D  
Affinity Capture-MS Homo sapiens
53 TTC3 7267
Affinity Capture-MS Homo sapiens
54 POM121  
Affinity Capture-MS Homo sapiens
55 TTLL5  
Affinity Capture-MS Homo sapiens
56 Slmap  
Co-fractionation Mus musculus
57 Arhgap42  
Co-fractionation Mus musculus
58 Pias3  
Co-fractionation Mus musculus
59 Stard13  
Co-fractionation Mus musculus
60 Gnas 14683
Co-fractionation Mus musculus
61 Lhx3  
Co-fractionation Mus musculus
62 Srgap2 14270
Co-fractionation Mus musculus
63 Arhgef7  
Co-fractionation Mus musculus
64 Exoc4  
Co-fractionation Mus musculus
65 Sorbs1  
Co-fractionation Mus musculus
66 Slc26a1  
Co-fractionation Mus musculus
67 IFT22 64792
Affinity Capture-MS Homo sapiens
68 Dmd  
Co-fractionation Mus musculus
69 Actn1 109711
Affinity Capture-Western Mus musculus
70 RALBP1 10928
Affinity Capture-MS Homo sapiens
71 Timm44  
Co-fractionation Mus musculus
72 Srgap1  
Co-fractionation Mus musculus
73 Ivns1abp  
Co-fractionation Mus musculus
74 Gnal  
Co-fractionation Mus musculus
75 MKNK1  
Affinity Capture-MS Homo sapiens
76 Arhgap15  
Co-fractionation Mus musculus
77 HECTD4 283450
Affinity Capture-MS Homo sapiens
78 Fcho2  
Co-fractionation Mus musculus
79 Syngap1  
Co-fractionation Mus musculus
80 BCKDHA 593
Affinity Capture-MS Homo sapiens
81 Kctd13  
Affinity Capture-MS Mus musculus
82 Lman2l  
Co-fractionation Mus musculus
83 Gli2  
Co-fractionation Mus musculus
84 CENPF 1063
Affinity Capture-MS Homo sapiens
85 Cpb2  
Co-fractionation Mus musculus
86 Dock1  
Co-fractionation Mus musculus
87 Rasgef1b  
Co-fractionation Mus musculus
88 TRIM29 23650
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which Pdlim5 is involved
No pathways found





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