Gene description for NOD2
Gene name nucleotide-binding oligomerization domain containing 2
Gene symbol NOD2
Other names/aliases ACUG
BLAU
CARD15
CD
CLR16.3
IBD1
NLRC2
NOD2B
PSORAS1
Species Homo sapiens
 Database cross references - NOD2
ExoCarta ExoCarta_64127
Vesiclepedia VP_64127
Entrez Gene 64127
HGNC 5331
MIM 605956
UniProt Q9HC29  
 NOD2 identified in exosomes derived from the following tissue/cell type
Hepatocytes 26054723    
 Gene ontology annotations for NOD2
Molecular Function
    actin binding GO:0003779 IDA
    protein binding GO:0005515 IPI
    ATP binding GO:0005524 IEA
    enzyme binding GO:0019899 IPI
    protein kinase binding GO:0019901 IPI
    Hsp70 protein binding GO:0030544 IPI
    muramyl dipeptide binding GO:0032500 IDA
    pattern recognition receptor activity GO:0038187 IDA
    peptidoglycan binding GO:0042834 IDA
    ubiquitin binding GO:0043130 IDA
    ADP binding GO:0043531 ISS
    protein-containing complex binding GO:0044877 IPI
    CARD domain binding GO:0050700 IPI
    Hsp90 protein binding GO:0051879 IDA
Biological Process
    temperature homeostasis GO:0001659 ISS
    pattern recognition receptor signaling pathway GO:0002221 IDA
    innate immune response in mucosa GO:0002227 IEA
    adaptive immune response GO:0002250 IEA
    positive regulation of dendritic cell antigen processing and presentation GO:0002606 ISS
    negative regulation of T cell mediated immunity GO:0002710 IEA
    positive regulation of cytokine production involved in immune response GO:0002720 IMP
    positive regulation of dendritic cell cytokine production GO:0002732 IEA
    biosynthetic process of antibacterial peptides active against Gram-positive bacteria GO:0002815 IEA
    positive regulation of type 2 immune response GO:0002830 IMP
    negative regulation of inflammatory response to antigenic stimulus GO:0002862 IEA
    positive regulation of humoral immune response mediated by circulating immunoglobulin GO:0002925 IEA
    phagocytosis GO:0006909 IEA
    defense response GO:0006952 TAS
    positive regulation of biosynthetic process of antibacterial peptides active against Gram-positive bacteria GO:0006965 IEA
    JNK cascade GO:0007254 IEA
    response to nutrient GO:0007584 IEA
    detection of biotic stimulus GO:0009595 TAS
    negative regulation of macrophage cytokine production GO:0010936 IEA
    detection of bacterium GO:0016045 IDA
    maintenance of gastrointestinal epithelium GO:0030277 IMP
    regulation of appetite GO:0032098 ISS
    response to muramyl dipeptide GO:0032495 IBA
    response to muramyl dipeptide GO:0032495 IDA
    response to muramyl dipeptide GO:0032495 IMP
    detection of muramyl dipeptide GO:0032498 IDA
    detection of muramyl dipeptide GO:0032498 IDA
    negative regulation of type II interferon production GO:0032689 IEA
    negative regulation of interleukin-12 production GO:0032695 IEA
    negative regulation of interleukin-18 production GO:0032701 IEA
    negative regulation of interleukin-2 production GO:0032703 IEA
    negative regulation of tumor necrosis factor production GO:0032720 IEA
    positive regulation of interleukin-1 beta production GO:0032731 IDA
    positive regulation of interleukin-1 beta production GO:0032731 IMP
    positive regulation of interleukin-10 production GO:0032733 ISS
    positive regulation of interleukin-12 production GO:0032735 IEA
    positive regulation of interleukin-17 production GO:0032740 IMP
    positive regulation of interleukin-6 production GO:0032755 IDA
    positive regulation of interleukin-8 production GO:0032757 IMP
    positive regulation of tumor necrosis factor production GO:0032760 IDA
    positive regulation of tumor necrosis factor production GO:0032760 IMP
    positive regulation of stress-activated MAPK cascade GO:0032874 IDA
    toll-like receptor 2 signaling pathway GO:0034134 IEA
    negative regulation of toll-like receptor 2 signaling pathway GO:0034136 IEA
    response to endoplasmic reticulum stress GO:0034976 IEA
    intracellular signal transduction GO:0035556 IBA
    intracellular signal transduction GO:0035556 IDA
    intestinal stem cell homeostasis GO:0036335 ISS
    defense response to bacterium GO:0042742 IBA
    defense response to bacterium GO:0042742 IDA
    positive regulation of canonical NF-kappaB signal transduction GO:0043123 IBA
    positive regulation of canonical NF-kappaB signal transduction GO:0043123 IDA
    positive regulation of canonical NF-kappaB signal transduction GO:0043123 IDA
    positive regulation of canonical NF-kappaB signal transduction GO:0043123 IMP
    response to exogenous dsRNA GO:0043330 IEA
    positive regulation of MAPK cascade GO:0043410 ISS
    innate immune response GO:0045087 IDA
    innate immune response GO:0045087 NAS
    positive regulation of Notch signaling pathway GO:0045747 ISS
    positive regulation of transcription by RNA polymerase II GO:0045944 IDA
    positive regulation of JNK cascade GO:0046330 IDA
    positive regulation of gamma-delta T cell activation GO:0046645 ISS
    host-mediated regulation of intestinal microbiota composition GO:0048874 ISS
    positive regulation of epithelial cell proliferation GO:0050679 ISS
    regulation of inflammatory response GO:0050727 IC
    positive regulation of peptidyl-tyrosine phosphorylation GO:0050731 IEA
    positive regulation of phagocytosis GO:0050766 IEA
    positive regulation of B cell activation GO:0050871 IDA
    positive regulation of NF-kappaB transcription factor activity GO:0051092 IDA
    positive regulation of NF-kappaB transcription factor activity GO:0051092 IDA
    positive regulation of NF-kappaB transcription factor activity GO:0051092 IMP
    stress-activated MAPK cascade GO:0051403 IEA
    establishment of localization in cell GO:0051649 IEA
    positive regulation of macrophage cytokine production GO:0060907 IEA
    ERK1 and ERK2 cascade GO:0070371 IEA
    positive regulation of ERK1 and ERK2 cascade GO:0070374 ISS
    nucleotide-binding oligomerization domain containing 2 signaling pathway GO:0070431 IDA
    nucleotide-binding oligomerization domain containing 2 signaling pathway GO:0070431 IDA
    cellular response to lipopolysaccharide GO:0071222 IMP
    cellular response to peptidoglycan GO:0071224 IEA
    cellular response to muramyl dipeptide GO:0071225 IDA
    cellular response to muramyl dipeptide GO:0071225 IMP
    cellular response to organic cyclic compound GO:0071407 IEA
    positive regulation of monocyte chemotactic protein-1 production GO:0071639 IEA
    regulation of neutrophil chemotaxis GO:0090022 IEA
    xenophagy GO:0098792 IEA
    antibacterial innate immune response GO:0140367 IDA
    positive regulation of cytokine production involved in inflammatory response GO:1900017 IDA
    positive regulation of non-canonical NF-kappaB signal transduction GO:1901224 IMP
    positive regulation of mitophagy GO:1901526 ISS
    positive regulation of protein K63-linked ubiquitination GO:1902523 IMP
    positive regulation of xenophagy GO:1904417 IEA
    negative regulation of macrophage apoptotic process GO:2000110 ISS
Subcellular Localization
    cytoplasm GO:0005737 IDA
    cytoplasm GO:0005737 TAS
    mitochondrion GO:0005739 IEA
    Golgi apparatus GO:0005794 IDA
    cytosol GO:0005829 IBA
    cytosol GO:0005829 IDA
    cytosol GO:0005829 IDA
    cytosol GO:0005829 TAS
    cytoskeleton GO:0005856 IDA
    plasma membrane GO:0005886 IDA
    plasma membrane GO:0005886 IDA
    plasma membrane GO:0005886 IMP
    cell surface GO:0009986 IDA
    basolateral plasma membrane GO:0016323 IDA
    extrinsic component of plasma membrane GO:0019897 IDA
    vesicle GO:0031982 IDA
    protein-containing complex GO:0032991 IDA
    phagocytic vesicle GO:0045335 IDA
 Experiment description of studies that identified NOD2 in exosomes
1
Experiment ID 237
MISEV standards
EM
Biophysical techniques
TSG101|Alix|HSC70|GAPDH
Enriched markers
HSP90B1
Negative markers
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocytes
Sample name MIHA
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RNA Sequencing
 Protein-protein interactions for NOD2
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 STUB1 10273
Affinity Capture-MS Homo sapiens
2 ATG16L1 55054
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
3 RBL1  
Positive Genetic Homo sapiens
4 TLE1 7088
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
5 RIPK2  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
6 NOD1 10392
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
7 NLRC4  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
8 PPP2R5E 5529
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
9 XIAP  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
10 IRGM 345611
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
11 IL22  
Negative Genetic Homo sapiens
12 TNFAIP3 7128
Affinity Capture-Western Homo sapiens
13 TRAF4 9618
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
14 HSPA8 3312
Affinity Capture-MS Homo sapiens
15 E2F4  
Negative Genetic Homo sapiens
16 RNF31 55072
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
17 IKBKG 8517
Affinity Capture-Western Homo sapiens
18 BIRC2  
Affinity Capture-Western Homo sapiens
19 TRAF6 7189
Affinity Capture-Western Homo sapiens
20 IFNL3  
Positive Genetic Homo sapiens
21 SQSTM1 8878
Affinity Capture-Western Homo sapiens
22 UBC 7316
Co-crystal Structure Homo sapiens
23 ATM 472
Negative Genetic Homo sapiens
24 RIPK1 8737
Affinity Capture-Western Homo sapiens
25 MAP3K7  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
26 NOD2 64127
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
27 CASP12 100506742
Affinity Capture-Western Homo sapiens
28 CASP1  
Affinity Capture-Western Homo sapiens
29 FIS1 51024
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
30 NAT16  
Affinity Capture-Western Homo sapiens
31 COPS6 10980
Affinity Capture-Western Homo sapiens
32 TRIM27  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
33 KAT5  
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
34 SHARPIN  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
35 HDGFRP3 50810
Affinity Capture-MS Homo sapiens
36 GALNT2 2590
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
37 VIM 7431
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
38 RBCK1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
39 CYLD  
Affinity Capture-Western Homo sapiens
40 BIRC3 330
Affinity Capture-Western Homo sapiens
View the network image/svg+xml
 Pathways in which NOD2 is involved
PathwayEvidenceSource
activated TAK1 mediates p38 MAPK activation TAS Reactome
Cytokine Signaling in Immune system TAS Reactome
Deubiquitination TAS Reactome
Disease TAS Reactome
Immune System TAS Reactome
Immune System IEA Reactome
Infectious disease TAS Reactome
Innate Immune System TAS Reactome
Innate Immune System IEA Reactome
Interleukin-1 family signaling TAS Reactome
Interleukin-1 signaling TAS Reactome
Interleukin-17 signaling TAS Reactome
JNK (c-Jun kinases) phosphorylation and activation mediated by activated human TAK1 TAS Reactome
MAP kinase activation TAS Reactome
Metabolism of proteins TAS Reactome
MyD88 cascade initiated on plasma membrane TAS Reactome
MyD88 dependent cascade initiated on endosome TAS Reactome
MyD88-independent TLR4 cascade TAS Reactome
MyD88:MAL(TIRAP) cascade initiated on plasma membrane TAS Reactome
NOD1/2 Signaling Pathway TAS Reactome
NOD1/2 Signaling Pathway IEA Reactome
Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways TAS Reactome
Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways IEA Reactome
Ovarian tumor domain proteases TAS Reactome
Post-translational protein modification TAS Reactome
SARS-CoV Infections TAS Reactome
SARS-CoV-2 activates/modulates innate and adaptive immune responses TAS Reactome
SARS-CoV-2 Infection TAS Reactome
SARS-CoV-2-host interactions TAS Reactome
Signaling by Interleukins TAS Reactome
TAK1-dependent IKK and NF-kappa-B activation TAS Reactome
Toll Like Receptor 10 (TLR10) Cascade TAS Reactome
Toll Like Receptor 2 (TLR2) Cascade TAS Reactome
Toll Like Receptor 3 (TLR3) Cascade TAS Reactome
Toll Like Receptor 4 (TLR4) Cascade TAS Reactome
Toll Like Receptor 5 (TLR5) Cascade TAS Reactome
Toll Like Receptor 7/8 (TLR7/8) Cascade TAS Reactome
Toll Like Receptor 9 (TLR9) Cascade TAS Reactome
Toll Like Receptor TLR1:TLR2 Cascade TAS Reactome
Toll Like Receptor TLR6:TLR2 Cascade TAS Reactome
Toll-like Receptor Cascades TAS Reactome
TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation TAS Reactome
TRIF (TICAM1)-mediated TLR4 signaling TAS Reactome
Viral Infection Pathways TAS Reactome





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