Gene description for Hnrnpf
Gene name heterogeneous nuclear ribonucleoprotein F
Gene symbol Hnrnpf
Other names/aliases 4833420I20Rik
AA407306
Hnrpf
Species Mus musculus
 Database cross references - Hnrnpf
ExoCarta ExoCarta_98758
Vesiclepedia VP_98758
Entrez Gene 98758
UniProt Q9Z2X1  
 Hnrnpf identified in exosomes derived from the following tissue/cell type
Colon cancer cells 37309723    
Mast cells 17486113    
T-cell lymphoma cells 37309723    
 Gene ontology annotations for Hnrnpf
Molecular Function
    RNA binding GO:0003723 IBA
    single-stranded RNA binding GO:0003727 ISO
    single-stranded RNA binding GO:0003727 ISS
    TBP-class protein binding GO:0017025 IEA
    TBP-class protein binding GO:0017025 ISO
Biological Process
    mRNA processing GO:0006397 IEA
    RNA splicing GO:0008380 IEA
    regulation of RNA splicing GO:0043484 IBA
    regulation of RNA splicing GO:0043484 ISO
    regulation of RNA splicing GO:0043484 ISS
Subcellular Localization
    nucleoplasm GO:0005654 IBA
    nucleoplasm GO:0005654 IEA
    nucleoplasm GO:0005654 ISO
    cytosol GO:0005829 IEA
    cytosol GO:0005829 ISO
    synapse GO:0045202 EXP
    synapse GO:0045202 IDA
    catalytic step 2 spliceosome GO:0071013 IEA
    catalytic step 2 spliceosome GO:0071013 ISO
    ribonucleoprotein complex GO:1990904 IBA
 Experiment description of studies that identified Hnrnpf in exosomes
1
Experiment ID 907
MISEV standards
EM
Biophysical techniques
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
HSPA5
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 37309723    
Organism Mus musculus
Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name Proteomics
Publication year 2023
Sample Colon cancer cells
Sample name C26
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 15
MISEV standards
EM
Biophysical techniques
CD63
Enriched markers
Negative markers
Particle analysis
Identified molecule mrna
Identification method Microarray
PubMed ID 17486113    
Organism Mus musculus
Homo sapiens
Experiment description Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Authors "Valadi H, Ekstrom K, Bossios A, Sjostrand M, Lee JJ, Lotvall JO"
Journal name NCB
Publication year 2007
Sample Mast cells
Sample name MC9
Bone marrow-derived mast cells
HMC-1
Isolation/purification methods Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.11-1.21 g/mL
Molecules identified in the study Protein
mRNA
miRNA
Methods used in the study Mass spectrometry [MALDI TOF]
Western blotting
Microarray
miRCURY LNA Array
3
Experiment ID 908
MISEV standards
EM
Biophysical techniques
Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a
Enriched markers
HSPA5
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 37309723    
Organism Mus musculus
Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells
Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S."
Journal name Proteomics
Publication year 2023
Sample T-cell lymphoma cells
Sample name EL4
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
 Protein-protein interactions for Hnrnpf
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 Sf3a3 75062
Co-fractionation Mus musculus
2 HNRNPH1 3187
Affinity Capture-MS Homo sapiens
3 PRICKLE3  
Affinity Capture-MS Homo sapiens
4 Cbx1  
Affinity Capture-MS Mus musculus
5 SLC25A3 5250
Affinity Capture-MS Homo sapiens
6 PKN3 29941
Affinity Capture-MS Homo sapiens
7 MKRN1 23608
Affinity Capture-MS Homo sapiens
8 TUBB 203068
Affinity Capture-MS Homo sapiens
9 HNRNPH2 3188
Affinity Capture-MS Homo sapiens
10 CBX8 57332
Affinity Capture-MS Homo sapiens
11 Hnrnpc 15381
Co-fractionation Mus musculus
12 YTHDF2 51441
Affinity Capture-MS Homo sapiens
13 DNAJA3 9093
Affinity Capture-MS Homo sapiens
14 Prpf8 192159
Co-fractionation Mus musculus
15 TXNL4A 10907
Two-hybrid Homo sapiens
16 LARP4B 23185
Affinity Capture-MS Homo sapiens
17 LMNB1 4001
Affinity Capture-MS Homo sapiens
18 ATP1A1 476
Affinity Capture-MS Homo sapiens
19 TARDBP 23435
Affinity Capture-MS Homo sapiens
20 PRPF6 24148
Two-hybrid Homo sapiens
21 Kctd13  
Affinity Capture-MS Mus musculus
22 RBM14 10432
Affinity Capture-MS Homo sapiens
23 HNRNPM 4670
Affinity Capture-MS Homo sapiens
24 Tfe3  
Affinity Capture-MS Mus musculus
25 Snrnp200 320632
Co-fractionation Mus musculus
26 EMD 2010
Affinity Capture-MS Homo sapiens
27 Tia1  
Affinity Capture-MS Mus musculus
28 EHMT2 10919
Affinity Capture-MS Homo sapiens
29 RBFOX2 23543
Affinity Capture-MS Homo sapiens
30 Iqcb1  
Affinity Capture-MS Mus musculus
31 Mecp2  
Affinity Capture-MS Mus musculus
32 CHCHD3 54927
Affinity Capture-MS Homo sapiens
33 Cbx5  
Affinity Capture-MS Mus musculus
34 TRIP12 9320
Affinity Capture-MS Homo sapiens
35 Nphp4  
Affinity Capture-MS Mus musculus
36 Fzr1  
Affinity Capture-MS Mus musculus
37 SLC25A11 8402
Affinity Capture-MS Homo sapiens
38 Srsf1 110809
Co-fractionation Mus musculus
39 ATAD3A 55210
Affinity Capture-MS Homo sapiens
40 TMCO1 54499
Affinity Capture-MS Homo sapiens
41 Dmrt2  
Reconstituted Complex Mus musculus
Affinity Capture-Western Mus musculus
42 SEC16A 9919
Affinity Capture-MS Homo sapiens
43 Plrg1  
Co-fractionation Mus musculus
44 LSM11  
Affinity Capture-MS Homo sapiens
45 Cbx3 12417
Affinity Capture-MS Mus musculus
46 MATR3 9782
Affinity Capture-MS Homo sapiens
47 Ppil3  
Co-fractionation Mus musculus
48 Eed  
Affinity Capture-MS Mus musculus
49 RPL36AL 6166
Two-hybrid Homo sapiens
50 MAP7 9053
Affinity Capture-MS Homo sapiens
51 Ptbp1 19205
Co-fractionation Mus musculus
52 FAM120A 23196
Affinity Capture-MS Homo sapiens
53 Skiv2l2  
Co-fractionation Mus musculus
54 MYBBP1A 10514
Affinity Capture-MS Homo sapiens
55 Txnl4a  
Co-fractionation Mus musculus
56 Fancd2  
Affinity Capture-MS Mus musculus
57 Tmem173  
Proximity Label-MS Mus musculus
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