Gene description for MATR3
Gene name matrin 3
Gene symbol MATR3
Other names/aliases ALS21
MPD2
VCPDM
Species Homo sapiens
 Database cross references - MATR3
ExoCarta ExoCarta_9782
Vesiclepedia VP_9782
Entrez Gene 9782
HGNC 6912
MIM 164015
UniProt P43243  
 MATR3 identified in sEVs derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Breast cancer cells 34108659    
Breast cancer cells 34108659    
Breast cancer cells 34108659    
Breast cancer cells 34108659    
Chondrocytes 35931686    
Chondrocytes 35931686    
Colorectal cancer cells 23161513    
Colorectal cancer cells 23161513    
Colorectal cancer cells 23161513    
Colorectal cancer cells 34887515    
Embryonic kidney cells 34108659    
Embryonic kidney cells 34108659    
Embryonic kidney cells 34108659    
Foreskin fibroblasts 34108659    
Gastric cancer cells 33991177    
Gastric cancer cells 33991177    
Gastric cancer cells 33991177    
Lymphoma cells 34108659    
Mammary cancer-associated fibroblasts 34108659    
Mesenchymal stem cells 36408942    
Monocytic leukemia cells 34108659    
Normal mammary epithelial cells 34108659    
Ovarian cancer cells 23333927    
Ovarian cancer cells 23333927    
Pancreatic cancer cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic duct epithalial cells 34108659    
Pancreatic duct epithalial cells 34108659    
Pluripotent stem cells 34108659    
Squamous carcinoma cells 20124223    
T lymphocytes 34108659    
Thymus 23844026    
 Gene ontology annotations for MATR3
Molecular Function
    RNA binding GO:0003723 HDA
    RNA binding GO:0003723 IBA
    structural molecule activity GO:0005198 TAS
    protein binding GO:0005515 IPI
    zinc ion binding GO:0008270 IEA
    miRNA binding GO:0035198 IDA
    identical protein binding GO:0042802 IPI
Biological Process
    blastocyst formation GO:0001825 IEA
    activation of innate immune response GO:0002218 IDA
    heart valve development GO:0003170 ISS
    ventricular septum development GO:0003281 ISS
    post-transcriptional regulation of gene expression GO:0010608 IDA
    innate immune response GO:0045087 IEA
Subcellular Localization
    nucleus GO:0005634 IBA
    nuclear inner membrane GO:0005637 TAS
    membrane GO:0016020 HDA
    nuclear matrix GO:0016363 IEA
 Experiment description of studies that identified MATR3 in sEVs
1
Experiment ID 489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
5
Experiment ID 412
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX|ACTB
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MCF7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
6
Experiment ID 414
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MDA-MB-231
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
7
Experiment ID 426
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MDA-MB-231 - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
8
Experiment ID 427
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MDA-MB-231 - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
9
Experiment ID 497
MISEV standards
✘ Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name T/C-28a2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
10
Experiment ID 498
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name T/C-28a2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
11
Experiment ID 207
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors "Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name DKO-1
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
12
Experiment ID 208
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors "Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name Dks-8
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
13
Experiment ID 209
MISEV standards
✘ Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors "Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name DLD-1
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
14
Experiment ID 1203
MISEV standards
✔
EM
Biophysical techniques
✔
SDCBP|FLOT1|CD9|CD81|CD63|EPCAM|GAPDH|LAMP1|TFRC|CD151|CD82|LAMP2|RAB35|TSG101|FLOT2|RAB5B|ICAM1|RAB5A
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 34887515    
Organism Homo sapiens
Experiment description Supermeres are functional extracellular nanoparticles replete with disease biomarkers and therapeutic targets
Authors "Zhang Q, Jeppesen DK, Higginbotham JN, Graves-Deal R, Trinh VQ, Ramirez MA, Sohn Y, Neininger AC, Taneja N, McKinley ET, Niitsu H, Cao Z, Evans R, Glass SE, Ray KC, Fissell WH, Hill S, Rose KL, Huh WJ, Washington MK, Ayers GD, Burnette DT, Sharma S, Rome LH, Franklin JL, Lee YA, Liu Q, Coffey RJ."
Journal name Nat Cell Biol
Publication year 2021
Sample Colorectal cancer cells
Sample name DiFi
Isolation/purification methods Differential centrifugation
Filtration
Centrifugal ultrafiltration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
miRNA
Methods used in the study Western blotting
Mass spectrometry
RNA sequencing
15
Experiment ID 407
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|CD81|SDCBP|TSG101|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
16
Experiment ID 419
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
17
Experiment ID 419
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
18
Experiment ID 420
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
19
Experiment ID 420
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
20
Experiment ID 405
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|CD81|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Foreskin fibroblasts
Sample name BJ
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
21
Experiment ID 363
MISEV standards
✘ Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 33991177    
Organism Homo sapiens
Experiment description Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors "Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name Proteomics
Publication year 2021
Sample Gastric cancer cells
Sample name MKN1 - 100K pellet
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
22
Experiment ID 364
MISEV standards
✘ Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 33991177    
Organism Homo sapiens
Experiment description Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors "Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name Proteomics
Publication year 2021
Sample Gastric cancer cells
Sample name MKN1 - 100K pellet
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
23
Experiment ID 365
MISEV standards
✘ Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 33991177    
Organism Homo sapiens
Experiment description Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors "Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name Proteomics
Publication year 2021
Sample Gastric cancer cells
Sample name MKN1 - 100K pellet
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
24
Experiment ID 417
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD63|SDCBP|LAMP1|CD9|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX|ACTB
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Lymphoma cells
Sample name Raji
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
25
Experiment ID 411
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Mammary cancer-associated fibroblasts
Sample name mCAF
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
26
Experiment ID 488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Homo sapiens
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Mesenchymal stem cells
Sample name UCMSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
27
Experiment ID 418
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Monocytic leukemia cells
Sample name THP-1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
28
Experiment ID 418
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Monocytic leukemia cells
Sample name THP-1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
29
Experiment ID 413
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Normal mammary epithelial cells
Sample name MCF10A
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
30
Experiment ID 211
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
cytochrome c|GOLGA2
Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors "Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name IGROV1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
31
Experiment ID 212
MISEV standards
✔
CEM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
Cytochrome C|GOLGA2
Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors "Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name OVCAR-3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
32
Experiment ID 406
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35|CD81
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name BxPC3
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
33
Experiment ID 415
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name PANC-1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
34
Experiment ID 434
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name PANC-1 - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
35
Experiment ID 435
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name PANC-1 - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
36
Experiment ID 408
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|CD81|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX|ACTB
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic duct epithalial cells
Sample name HPDE
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
37
Experiment ID 409
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD63|SDCBP|LAMP1|CD9|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic duct epithalial cells
Sample name HPNE
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
38
Experiment ID 416
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pluripotent stem cells
Sample name PSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
39
Experiment ID 191
MISEV standards
✘ Biophysical techniques
✔
Alix|CD81|CD9
Enriched markers
✘ Negative markers
✘ Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 20124223    
Organism Homo sapiens
Experiment description Hypoxic tumor cell modulates its microenvironment to enhance angiogenic and metastatic potential by secretion of proteins and exosomes.
Authors "Park JE, Tan HS, Datta A, Lai RC, Zhang H, Meng W, Lim SK, Sze SK."
Journal name Mol Cell Proteomics
Publication year 2010
Sample Squamous carcinoma cells
Sample name Squamous carcinoma cell (A431)
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
40
Experiment ID 410
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD63|SDCBP|LAMP1|CD9|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample T lymphocytes
Sample name Jurkat
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
41
Experiment ID 217
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|CD81|CD9|CD63
Enriched markers
✘ Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors "Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for MATR3
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 ISG15 9636
Affinity Capture-MS Homo sapiens
2 EIF2AK4 440275
Affinity Capture-MS Homo sapiens
3 PPP1CB 5500
Affinity Capture-MS Homo sapiens
4 HDAC2 3066
Co-fractionation Homo sapiens
5 NPRL2  
Affinity Capture-MS Homo sapiens
6 METTL3  
Affinity Capture-MS Homo sapiens
7 PRPF8 10594
Co-fractionation Homo sapiens
8 PKP2 5318
Affinity Capture-MS Homo sapiens
9 CCDC132 55610
Co-fractionation Homo sapiens
10 DDX17 10521
Affinity Capture-MS Homo sapiens
11 KIF20A 10112
Affinity Capture-MS Homo sapiens
12 UBC 7316
Affinity Capture-MS Homo sapiens
13 KPNA2 3838
Co-fractionation Homo sapiens
14 PRKDC 5591
Co-fractionation Homo sapiens
15 AKAP8L  
Affinity Capture-MS Homo sapiens
16 PCBP3 54039
Two-hybrid Homo sapiens
17 APEX1 328
Affinity Capture-RNA Homo sapiens
18 DDX23 9416
Co-fractionation Homo sapiens
19 SNRNP70 6625
Co-fractionation Homo sapiens
20 PFKL 5211
Co-fractionation Homo sapiens
21 IARS2 55699
Co-fractionation Homo sapiens
22 H2AFV 94239
Co-fractionation Homo sapiens
23 SMC2 10592
Co-fractionation Homo sapiens
24 MECP2 4204
Affinity Capture-MS Homo sapiens
25 EEF1A1 1915
Co-fractionation Homo sapiens
26 GFI1B  
Two-hybrid Homo sapiens
27 KIF14 9928
Affinity Capture-MS Homo sapiens
28 EMC9  
Affinity Capture-MS Homo sapiens
29 RBMX 27316
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
30 UNK  
Affinity Capture-RNA Homo sapiens
31 HEXIM1 10614
Co-fractionation Homo sapiens
32 CHMP4C 92421
Affinity Capture-MS Homo sapiens
33 AURKA 6790
Affinity Capture-MS Homo sapiens
34 UTP14A 10813
Co-fractionation Homo sapiens
35 RBM12B  
Affinity Capture-MS Homo sapiens
36 CRY1  
Affinity Capture-MS Homo sapiens
37 USP11 8237
Affinity Capture-MS Homo sapiens
38 MEPCE 56257
Affinity Capture-MS Homo sapiens
39 RBM4B  
Affinity Capture-MS Homo sapiens
40 SIM2  
Affinity Capture-MS Homo sapiens
41 LOC102724023  
Cross-Linking-MS (XL-MS) Homo sapiens
42 YAP1 10413
Affinity Capture-MS Homo sapiens
43 SLX4  
Affinity Capture-MS Homo sapiens
44 ALKBH3  
Affinity Capture-MS Homo sapiens
45 DTX2 113878
Proximity Label-MS Homo sapiens
46 Hnrnpf 98758
Affinity Capture-MS Mus musculus
47 HECTD1 25831
Affinity Capture-MS Homo sapiens
48 Ptbp1 19205
Affinity Capture-MS Mus musculus
49 DDX39B 7919
Affinity Capture-MS Homo sapiens
50 SQRDL 58472
Affinity Capture-MS Homo sapiens
51 ZNF326 284695
Affinity Capture-MS Homo sapiens
52 ANLN 54443
Affinity Capture-MS Homo sapiens
53 HSPA5 3309
Co-fractionation Homo sapiens
54 NASP 4678
Co-fractionation Homo sapiens
55 C9orf78 51759
Affinity Capture-MS Homo sapiens
56 MYH14 79784
Co-fractionation Homo sapiens
57 CUL3 8452
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
58 SLTM 79811
Affinity Capture-MS Homo sapiens
59 FN1 2335
Affinity Capture-MS Homo sapiens
60 KRT27 342574
Two-hybrid Homo sapiens
61 PPHLN1  
Affinity Capture-MS Homo sapiens
62 PRMT5 10419
Co-fractionation Homo sapiens
63 PCBP1 5093
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
64 TJP2 9414
Co-fractionation Homo sapiens
65 RPA3 6119
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
66 TMEM184C  
Cross-Linking-MS (XL-MS) Homo sapiens
67 GSTK1 373156
Affinity Capture-MS Homo sapiens
68 PHF5A 84844
Co-fractionation Homo sapiens
69 Hnrnpa3 229279
Affinity Capture-MS Mus musculus
70 YBX1 4904
Co-fractionation Homo sapiens
71 FASN 2194
Negative Genetic Homo sapiens
72 RRS1 23212
Co-fractionation Homo sapiens
73 RUVBL2 10856
Affinity Capture-MS Homo sapiens
74 SRSF9 8683
Affinity Capture-MS Homo sapiens
75 ATXN7  
Cross-Linking-MS (XL-MS) Homo sapiens
76 DCTN2 10540
Co-fractionation Homo sapiens
77 WWOX 51741
Affinity Capture-MS Homo sapiens
78 PUF60 22827
Co-fractionation Homo sapiens
79 SUGP2  
Affinity Capture-MS Homo sapiens
80 MAP1LC3A 84557
Affinity Capture-MS Homo sapiens
81 DDX3X 1654
Affinity Capture-MS Homo sapiens
82 ALYREF 10189
Affinity Capture-MS Homo sapiens
83 HNRNPL 3191
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
84 AIMP2 7965
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
85 POLR3B 55703
Affinity Capture-MS Homo sapiens
86 SNW1 22938
Co-fractionation Homo sapiens
87 PPP2R2A 5520
Co-fractionation Homo sapiens
88 IFIT2 3433
Affinity Capture-MS Homo sapiens
89 HNRNPH1 3187
Affinity Capture-MS Homo sapiens
90 RBMXL1  
Affinity Capture-MS Homo sapiens
91 KIF23 9493
Affinity Capture-MS Homo sapiens
92 SPRTN  
Affinity Capture-MS Homo sapiens
93 MCM2 4171
Co-fractionation Homo sapiens
94 RBM15B  
Affinity Capture-MS Homo sapiens
95 TARDBP 23435
Affinity Capture-MS Homo sapiens
96 NLRP5  
Affinity Capture-MS Homo sapiens
97 RPA2 6118
Affinity Capture-MS Homo sapiens
98 COPB2 9276
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
99 CAND1 55832
Affinity Capture-MS Homo sapiens
100 COPA 1314
Affinity Capture-MS Homo sapiens
101 DNAJB6 10049
Affinity Capture-MS Homo sapiens
102 SAFB 6294
Affinity Capture-MS Homo sapiens
103 TNK1  
Affinity Capture-MS Homo sapiens
104 RBM3 5935
Affinity Capture-MS Homo sapiens
105 MPHOSPH8 54737
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
106 PRC1 9055
Affinity Capture-MS Homo sapiens
107 ACTR1A 10121
Co-fractionation Homo sapiens
108 KHDRBS1 10657
Affinity Capture-MS Homo sapiens
109 OBSL1 23363
Affinity Capture-MS Homo sapiens
110 Cenpe  
Affinity Capture-MS Mus musculus
111 CUL1 8454
Affinity Capture-MS Homo sapiens
112 DNAH2 146754
Cross-Linking-MS (XL-MS) Homo sapiens
113 RRP7A 27341
Co-fractionation Homo sapiens
114 PRNP 5621
Affinity Capture-MS Homo sapiens
115 HNRNPA0 10949
Affinity Capture-MS Homo sapiens
116 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
117 DDX21 9188
Affinity Capture-MS Homo sapiens
118 RBM6 10180
Affinity Capture-MS Homo sapiens
119 PPT2  
Co-fractionation Homo sapiens
120 SNRNP200 23020
Co-fractionation Homo sapiens
121 VRK1 7443
Affinity Capture-MS Homo sapiens
122 UBR5 51366
Co-fractionation Homo sapiens
123 GSG2  
Affinity Capture-MS Homo sapiens
124 MAGOH 4116
Affinity Capture-MS Homo sapiens
125 RPL36A 6173
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
126 CYLD  
Affinity Capture-MS Homo sapiens
127 NFX1  
Affinity Capture-MS Homo sapiens
128 KDF1  
Affinity Capture-MS Homo sapiens
129 HNRNPD 3184
Affinity Capture-MS Homo sapiens
130 PER2  
Proximity Label-MS Homo sapiens
131 TUBB 203068
Co-fractionation Homo sapiens
132 PPP4R2  
Co-fractionation Homo sapiens
133 SMARCAD1  
Affinity Capture-MS Homo sapiens
134 EMC8 10328
Affinity Capture-MS Homo sapiens
135 USP15 9958
Co-fractionation Homo sapiens
136 RC3H2  
Affinity Capture-MS Homo sapiens
137 YLPM1 56252
Affinity Capture-MS Homo sapiens
138 EGFR 1956
PCA Homo sapiens
139 FUS 2521
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
140 FTH1 2495
Affinity Capture-MS Homo sapiens
141 EFTUD2 9343
Co-fractionation Homo sapiens
142 CDK2 1017
Affinity Capture-MS Homo sapiens
143 CEP250 11190
Affinity Capture-MS Homo sapiens
144 MYC  
Affinity Capture-MS Homo sapiens
145 BAG1 573
Affinity Capture-MS Homo sapiens
146 PKP4 8502
Affinity Capture-MS Homo sapiens
147 DDB1 1642
Co-fractionation Homo sapiens
148 CUL7 9820
Affinity Capture-MS Homo sapiens
149 DDRGK1 65992
Affinity Capture-MS Homo sapiens
150 ADAR 103
Affinity Capture-MS Homo sapiens
151 FAM120A 23196
Affinity Capture-MS Homo sapiens
152 RBM14 10432
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
153 RNF43  
Proximity Label-MS Homo sapiens
154 PRKCSH 5589
Co-fractionation Homo sapiens
155 STK24 8428
Co-fractionation Homo sapiens
156 HNRNPH2 3188
Affinity Capture-MS Homo sapiens
157 ILF3 3609
Affinity Capture-MS Homo sapiens
158 TP53 7157
Affinity Capture-MS Homo sapiens
159 AURKB 9212
Affinity Capture-MS Homo sapiens
160 PTBP1 5725
Affinity Capture-MS Homo sapiens
161 ACTR1B 10120
Co-fractionation Homo sapiens
162 INSIG2  
Affinity Capture-MS Homo sapiens
163 STK26 51765
Co-fractionation Homo sapiens
164 PTBP2  
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
165 HNRNPK 3190
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
166 ESR1  
Affinity Capture-MS Homo sapiens
167 NCAPD2 9918
Co-fractionation Homo sapiens
168 EEF1D 1936
Co-fractionation Homo sapiens
169 PUM1 9698
Affinity Capture-MS Homo sapiens
170 KRAS 3845
Negative Genetic Homo sapiens
171 PRMT1 3276
Affinity Capture-MS Homo sapiens
172 RCOR1  
Co-fractionation Homo sapiens
173 TIMM13 26517
Affinity Capture-MS Homo sapiens
174 RANBP2 5903
Co-fractionation Homo sapiens
175 ESCO2  
Affinity Capture-MS Homo sapiens
176 RALY 22913
Affinity Capture-MS Homo sapiens
177 ZNF668  
Affinity Capture-MS Homo sapiens
178 FAM208A  
Affinity Capture-MS Homo sapiens
179 UBE2H 7328
Affinity Capture-MS Homo sapiens
180 HNRNPC 3183
Affinity Capture-MS Homo sapiens
181 SENP3 26168
Affinity Capture-MS Homo sapiens
182 SET 6418
Affinity Capture-MS Homo sapiens
183 EEF1G 1937
Co-fractionation Homo sapiens
184 YWHAE 7531
Affinity Capture-MS Homo sapiens
185 ARCN1 372
Co-fractionation Homo sapiens
186 FUBP3 8939
Affinity Capture-MS Homo sapiens
187 HNRNPR 10236
Affinity Capture-MS Homo sapiens
188 HNRNPUL2 221092
Affinity Capture-MS Homo sapiens
189 ATG13 9776
Affinity Capture-MS Homo sapiens
190 PLEKHG4  
Two-hybrid Homo sapiens
191 RUVBL1 8607
Co-fractionation Homo sapiens
192 PRKCDBP 112464
Co-fractionation Homo sapiens
193 SARS2 54938
Co-fractionation Homo sapiens
194 ZNF638 27332
Affinity Capture-MS Homo sapiens
195 EWSR1 2130
Affinity Capture-MS Homo sapiens
196 MCM6 4175
Co-fractionation Homo sapiens
197 SRSF3 6428
Co-fractionation Homo sapiens
198 ITGA4 3676
Affinity Capture-MS Homo sapiens
199 ATG16L1 55054
Affinity Capture-MS Homo sapiens
200 POT1  
Co-fractionation Homo sapiens
201 CALR 811
Co-fractionation Homo sapiens
202 PSME3 10197
Affinity Capture-MS Homo sapiens
203 KRT34  
Two-hybrid Homo sapiens
204 ATP5A1 498
Co-fractionation Homo sapiens
205 FOXC1  
Affinity Capture-MS Homo sapiens
206 PARK2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
207 COPE 11316
Affinity Capture-MS Homo sapiens
208 ACACA 31
Co-fractionation Homo sapiens
209 CHMP4B 128866
Affinity Capture-MS Homo sapiens
210 SAFB2 9667
Affinity Capture-MS Homo sapiens
211 NTRK1 4914
Affinity Capture-MS Homo sapiens
212 U2AF2 11338
Affinity Capture-MS Homo sapiens
213 ARNT 405
Affinity Capture-MS Homo sapiens
214 RPA4  
Proximity Label-MS Homo sapiens
215 DHX9 1660
Affinity Capture-MS Homo sapiens
216 SUB1 10923
Co-fractionation Homo sapiens
217 HNRNPA3 220988
Affinity Capture-MS Homo sapiens
218 SF3A3 10946
Co-fractionation Homo sapiens
219 HNRNPDL 9987
Affinity Capture-MS Homo sapiens
220 DISC1 27185
Two-hybrid Homo sapiens
221 SF3B2 10992
Co-fractionation Homo sapiens
222 METTL14  
Affinity Capture-MS Homo sapiens
223 MSH2 4436
Co-fractionation Homo sapiens
224 ECT2 1894
Affinity Capture-MS Homo sapiens
225 HNRNPA1 3178
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
226 HNRNPUL1 11100
Affinity Capture-MS Homo sapiens
227 RCN1 5954
Affinity Capture-MS Homo sapiens
228 APOBEC3B 9582
Affinity Capture-MS Homo sapiens
229 PRR3  
Affinity Capture-MS Homo sapiens
230 NCAPH 23397
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
231 MRPL19 9801
Co-fractionation Homo sapiens
232 TOP1 7150
Affinity Capture-MS Homo sapiens
233 HTR2B  
Two-hybrid Homo sapiens
234 MATR3 9782
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
235 XRCC5 7520
Co-fractionation Homo sapiens
236 NCAPG 64151
Co-fractionation Homo sapiens
237 HIF1A 3091
Affinity Capture-MS Homo sapiens
238 FBXW11  
Affinity Capture-MS Homo sapiens
239 MCM5 4174
Affinity Capture-MS Homo sapiens
240 RPA1 6117
Affinity Capture-MS Homo sapiens
241 SNRPA 6626
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
242 HNRNPM 4670
Affinity Capture-MS Homo sapiens
243 G3BP1 10146
Co-fractionation Homo sapiens
244 PTBP3 9991
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
245 S100A9 6280
Co-fractionation Homo sapiens
246 DDX58 23586
Affinity Capture-RNA Homo sapiens
247 PDZD8 118987
Affinity Capture-MS Homo sapiens
248 UFL1 23376
Affinity Capture-MS Homo sapiens
249 MED12  
Affinity Capture-MS Homo sapiens
250 HNRNPH3 3189
Affinity Capture-MS Homo sapiens
251 RTCB 51493
Affinity Capture-MS Homo sapiens
252 HNRNPF 3185
Affinity Capture-MS Homo sapiens
253 C14orf166 51637
Affinity Capture-MS Homo sapiens
254 ERG  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
255 RC3H1 149041
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
256 SSRP1 6749
Affinity Capture-MS Homo sapiens
257 DDX28  
Affinity Capture-MS Homo sapiens
258 EP300 2033
Affinity Capture-MS Homo sapiens
259 CRBN  
Affinity Capture-MS Homo sapiens
260 LGR4 55366
Affinity Capture-MS Homo sapiens
261 SNAP23 8773
Two-hybrid Homo sapiens
262 MSH6 2956
Co-fractionation Homo sapiens
263 PPIE 10450
Affinity Capture-MS Homo sapiens
264 Ybx1 22608
Affinity Capture-MS Mus musculus
265 CDK5RAP1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
266 CXorf23  
Affinity Capture-MS Homo sapiens
267 ECI1 1632
Cross-Linking-MS (XL-MS) Homo sapiens
268 CALM1 801
Reconstituted Complex Homo sapiens
269 RASD1  
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
270 SNRPD2 6633
Co-fractionation Homo sapiens
271 TMPO 7112
Affinity Capture-MS Homo sapiens
272 ILF2 3608
Affinity Capture-MS Homo sapiens
273 KIAA1429 25962
Affinity Capture-MS Homo sapiens
274 BTF3 689
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
275 COPS5 10987
Affinity Capture-MS Homo sapiens
276 FBXW7  
Affinity Capture-MS Homo sapiens
277 C8orf82  
Proximity Label-MS Homo sapiens
278 NCOA5  
Affinity Capture-MS Homo sapiens
279 SNRPC 6631
Co-fractionation Homo sapiens
280 PSMC6 5706
Co-fractionation Homo sapiens
281 STAU2 27067
Affinity Capture-MS Homo sapiens
282 EED  
Affinity Capture-MS Homo sapiens
283 NAP1L4 4676
Affinity Capture-MS Homo sapiens
284 MYCN  
Affinity Capture-MS Homo sapiens
285 SMC4 10051
Co-fractionation Homo sapiens
286 CPEB1  
Affinity Capture-MS Homo sapiens
287 STOML2 30968
Co-fractionation Homo sapiens
288 PPP1CA 5499
Affinity Capture-MS Homo sapiens
289 Set 56086
Affinity Capture-MS Mus musculus
290 SMU1 55234
Co-fractionation Homo sapiens
291 STAU1 6780
Affinity Capture-MS Homo sapiens
292 UBE2I 7329
Biochemical Activity Homo sapiens
293 DDX5 1655
Affinity Capture-MS Homo sapiens
294 IFI16 3428
Affinity Capture-MS Homo sapiens
295 DCTN1 1639
Co-fractionation Homo sapiens
296 CRY2  
Affinity Capture-MS Homo sapiens
297 GANAB 23193
Co-fractionation Homo sapiens
298 BRD4 23476
Affinity Capture-MS Homo sapiens
299 PRKACB 5567
Affinity Capture-MS Homo sapiens
300 ACBD3 64746
Co-fractionation Homo sapiens
301 ELAVL2 1993
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
302 NUMA1 4926
Affinity Capture-MS Homo sapiens
303 S100P 6286
Affinity Capture-MS Homo sapiens
304 TAF15 8148
Affinity Capture-MS Homo sapiens
305 FANCD2  
Affinity Capture-MS Homo sapiens
306 CDK9 1025
Affinity Capture-MS Homo sapiens
307 CTNNB1 1499
Affinity Capture-MS Homo sapiens
308 NAA15 80155
Co-fractionation Homo sapiens
309 MCM4 4173
Co-fractionation Homo sapiens
310 RPL7 6129
Co-fractionation Homo sapiens
311 ELP2 55250
Co-fractionation Homo sapiens
312 AKAP8  
Affinity Capture-MS Homo sapiens
313 ZUFSP 221302
Affinity Capture-MS Homo sapiens
314 MYOF 26509
Co-fractionation Homo sapiens
315 PABPC5 140886
Affinity Capture-MS Homo sapiens
316 TSGA10  
Two-hybrid Homo sapiens
317 CCDC8  
Affinity Capture-MS Homo sapiens
318 EIF3D 8664
Affinity Capture-MS Homo sapiens
319 PKP3 11187
Affinity Capture-MS Homo sapiens
320 H2AFX 3014
Affinity Capture-MS Homo sapiens
321 SIRT6  
Affinity Capture-MS Homo sapiens
322 Akap8  
Affinity Capture-MS Mus musculus
323 SAP18 10284
Co-fractionation Homo sapiens
324 DPY30 84661
Affinity Capture-MS Homo sapiens
325 HNRNPA2B1 3181
Affinity Capture-MS Homo sapiens
326 RPS15 6209
Cross-Linking-MS (XL-MS) Homo sapiens
327 HDAC1 3065
Co-fractionation Homo sapiens
328 CHD4 1108
Co-fractionation Homo sapiens
329 EIF4A3 9775
Affinity Capture-MS Homo sapiens
330 NUP35 129401
Proximity Label-MS Homo sapiens
331 RBFOX2 23543
Affinity Capture-MS Homo sapiens
332 ZNF106  
Affinity Capture-MS Homo sapiens
333 RXRA 6256
Affinity Capture-MS Homo sapiens
334 TRIM31  
Affinity Capture-MS Homo sapiens
335 PINK1  
Affinity Capture-MS Homo sapiens
336 XRCC6 2547
Co-fractionation Homo sapiens
Proximity Label-MS Homo sapiens
337 HNRNPU 3192
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
338 C9orf72  
Affinity Capture-MS Homo sapiens
339 WDHD1  
Co-fractionation Homo sapiens
340 TNFRSF21 27242
Two-hybrid Homo sapiens
341 NEDD8 4738
Affinity Capture-MS Homo sapiens
342 CDC5L 988
Co-fractionation Homo sapiens
View the network image/svg+xml
 Pathways in which MATR3 is involved
No pathways found





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