Gene description for HDAC2
Gene name histone deacetylase 2
Gene symbol HDAC2
Other names/aliases HD2
RPD3
YAF1
Species Homo sapiens
 Database cross references - HDAC2
ExoCarta ExoCarta_3066
Entrez Gene 3066
HGNC 4853
MIM 605164
UniProt Q92769  
 HDAC2 identified in exosomes derived from the following tissue/cell type
Ovarian cancer cells 23333927    
Ovarian cancer cells 23333927    
Thymus 23844026    
 Gene ontology annotations for HDAC2
Molecular Function
    deacetylase activity GO:0019213 ISS
    sequence-specific DNA binding transcription factor activity GO:0003700 IEA
    chromatin binding GO:0003682 ISS
    protein deacetylase activity GO:0033558 IMP
    enzyme binding GO:0019899 IPI
    transcription factor binding GO:0008134 IPI
    Krueppel-associated box domain binding GO:0035851 IEA
    RNA polymerase II distal enhancer sequence-specific DNA binding GO:0000980 IDA
    nucleosomal DNA binding GO:0031492 IDA
    RNA polymerase II repressing transcription factor binding GO:0001103 IPI
    protein binding GO:0005515 IPI
    poly(A) RNA binding GO:0044822 IDA
    NAD-dependent histone deacetylase activity (H3-K9 specific) GO:0046969 IEA
    NAD-dependent histone deacetylase activity (H4-K16 specific) GO:0046970 IEA
    histone deacetylase activity GO:0004407 IDA
    core promoter binding GO:0001047 IEA
    RNA polymerase II core promoter proximal region sequence-specific DNA binding GO:0000978 IDA
    NAD-dependent histone deacetylase activity (H3-K14 specific) GO:0032041 IEA
    NAD-dependent histone deacetylase activity (H3-K18 specific) GO:0097372 IEA
    sequence-specific DNA binding GO:0043565 IDA
    NF-kappaB binding GO:0051059 IPI
    heat shock protein binding GO:0031072 IEA
Biological Process
    negative regulation of transcription from RNA polymerase II promoter GO:0000122 IMP
    regulation of protein kinase B signaling GO:0051896 IEA
    negative regulation of intrinsic apoptotic signaling pathway GO:2001243 IEA
    negative regulation of MHC class II biosynthetic process GO:0045347 IC
    neurotrophin TRK receptor signaling pathway GO:0048011 TAS
    chromatin remodeling GO:0006338 IC
    ATP-dependent chromatin remodeling GO:0043044 IDA
    positive regulation of transcription, DNA-templated GO:0045893 IC
    positive regulation of receptor biosynthetic process GO:0010870 IMP
    negative regulation of gene expression, epigenetic GO:0045814 TAS
    histone H3-K9 modification GO:0061647 IEA
    negative regulation of apoptotic process GO:0043066 ISS
    positive regulation of oligodendrocyte differentiation GO:0048714 IEA
    dendrite development GO:0016358 ISS
    negative regulation of cardiac muscle cell proliferation GO:0060044 IEA
    eyelid development in camera-type eye GO:0061029 ISS
    blood coagulation GO:0007596 TAS
    histone H3-K9 deacetylation GO:1990619 IEA
    positive regulation of cell proliferation GO:0008284 IMP
    negative regulation of canonical Wnt signaling pathway GO:0090090 IEA
    regulation of protein deacetylation GO:0090311 IEA
    gene expression GO:0010467 TAS
    positive regulation of transcription from RNA polymerase II promoter GO:0045944 IMP
    maintenance of chromatin silencing GO:0006344 IMP
    positive regulation of sequence-specific DNA binding transcription factor activity GO:0051091 IEA
    histone deacetylation GO:0016575 IMP
    negative regulation of cell cycle GO:0045786 TAS
    positive regulation of collagen biosynthetic process GO:0032967 IC
    response to cocaine GO:0042220 IEA
    histone H3 deacetylation GO:0070932 ISS
    circadian regulation of gene expression GO:0032922 ISS
    negative regulation of sequence-specific DNA binding transcription factor activity GO:0043433 IMP
    fungiform papilla formation GO:0061198 ISS
    odontogenesis of dentin-containing tooth GO:0042475 ISS
    regulation of gene expression, epigenetic GO:0040029 TAS
    epidermal cell differentiation GO:0009913 ISS
    hippocampus development GO:0021766 IEA
    hair follicle placode formation GO:0060789 ISS
    cellular response to heat GO:0034605 IEA
    negative regulation of neuron projection development GO:0010977 ISS
    positive regulation of proteolysis GO:0045862 IMP
    transcription, DNA-templated GO:0006351 IEA
    chromatin organization GO:0006325 TAS
    cardiac muscle cell development GO:0055013 IEA
    embryonic digit morphogenesis GO:0042733 ISS
    response to drug GO:0042493 IEA
    regulation of sarcomere organization GO:0060297 IEA
    histone H4 deacetylation GO:0070933 ISS
    negative regulation of transcription, DNA-templated GO:0045892 IMP
Subcellular Localization
    nuclear chromatin GO:0000790 IDA
    protein complex GO:0043234 IDA
    ESC/E(Z) complex GO:0035098 IDA
    nucleus GO:0005634 IDA
    transcription factor complex GO:0005667 IEA
    Sin3 complex GO:0016580 IDA
    NuRD complex GO:0016581 IDA
    cytoplasm GO:0005737 TAS
    nucleoplasm GO:0005654 TAS
    heterochromatin GO:0000792 IEA
    replication fork GO:0005657 IEA
 Experiment description of studies that identified HDAC2 in exosomes
1
Experiment ID 211
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix
EV Cytosolic markers
EpCAM|TFRC
EV Membrane markers
cytochrome c|GOLGA2
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name IGROV1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 212
ISEV standards
CEM
EV Biophysical techniques
TSG101|Alix
EV Cytosolic markers
EpCAM|TFRC
EV Membrane markers
Cytochrome C|GOLGA2
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name OVCAR-3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
3
Experiment ID 217
ISEV standards
EM
EV Biophysical techniques
TSG101
EV Cytosolic markers
CD81|CD9|CD63
EV Membrane markers
EV Negative markers
NTA
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O.
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for HDAC2
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 CDC20  
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
2 HMG20B  
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
3 ATR  
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
4 PML  
Reconstituted Complex Homo sapiens
5 MTA1  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
6 SMC3 9126
Co-purification Homo sapiens
7 HIF1AN  
Reconstituted Complex Homo sapiens
8 HOP  
Affinity Capture-Western Homo sapiens
9 RBL1  
Affinity Capture-Western Homo sapiens
10 HDAC10  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
11 ZNFN1A1  
Invivo Homo sapiens
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
12 CBFA2T3  
Affinity Capture-Western Homo sapiens
13 MTA2 9219
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
Affinity Capture-MS Homo sapiens
14 SAP130  
Affinity Capture-Western Homo sapiens
15 CHD3  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
16 SIN3A  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
17 PTMA 5757
Reconstituted Complex Homo sapiens
18 MBD3 53615
Affinity Capture-Western Homo sapiens
19 IFRD1 3475
Invitro Homo sapiens
Invivo Homo sapiens
20 SMARCA5 8467
Co-purification Homo sapiens
Co-purification Homo sapiens
21 GTF2I 2969
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
22 MAD1L1  
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
23 RB1 5925
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
24 GATAD2B  
Affinity Capture-Western Homo sapiens
25 SP1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
26 ZNF261  
Affinity Capture-MS Homo sapiens
27 IKZF2 22807
Affinity Capture-Western Homo sapiens
28 HCFC1 3054
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
29 BRCA1 672
Reconstituted Complex Homo sapiens
30 CDK7  
Affinity Capture-Western Homo sapiens
31 ZNFN1A4  
Affinity Capture-Western Homo sapiens
32 GSE1 23199
Affinity Capture-MS Homo sapiens
33 PPARD  
Affinity Capture-Western Homo sapiens
34 ZNF198  
Affinity Capture-MS Homo sapiens
35 SKIIP  
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
36 RELA  
Invivo Homo sapiens
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
37 CSNK2A1 1457
Biochemical Activity Homo sapiens
38 TOP2B 7155
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
39 HDAC1 3065
Co-purification Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
40 CHD4 1108
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
41 ZBTB16  
Reconstituted Complex Homo sapiens
42 CTBP1 1487
Invivo Homo sapiens
Affinity Capture-Western Homo sapiens
43 RBBP7 5931
Affinity Capture-MS Homo sapiens
44 BUB3 9184
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
45 MXD1  
Affinity Capture-Western Homo sapiens
46 SETDB1  
Affinity Capture-Western Homo sapiens
47 RBBP4 5928
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
48 PA2G4 5036
Reconstituted Complex Homo sapiens
49 TOP2A 7153
Affinity Capture-Western Homo sapiens
50 YY1 7528
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
51 HIF1A  
Reconstituted Complex Homo sapiens
52 HSPA4 3308
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
53 SMARCA2  
Co-purification Homo sapiens
54 CDYL 9425
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
55 SAP30 8819
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
Affinity Capture-MS Homo sapiens
56 KDM1A 23028
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
57 ING1  
Affinity Capture-MS Homo sapiens
58 SMARCA4 6597
Co-purification Homo sapiens
59 CDH1 999
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
60 EZH2  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
61 TAL1  
Affinity Capture-MS Homo sapiens
62 PPP1R8 5511
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
63 HR  
Affinity Capture-Western Homo sapiens
64 CABIN1  
Affinity Capture-Western Homo sapiens
65 MBD2  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
66 RUNX1T1  
Affinity Capture-Western Homo sapiens
67 PHF21A  
Co-purification Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
68 HDAC2 3066
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
69 VHL  
Reconstituted Complex Homo sapiens
70 ZNFN1A3  
Affinity Capture-Western Homo sapiens
71 ARID4B  
Affinity Capture-Western Homo sapiens
72 FKBP3 2287
Invivo Homo sapiens
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
73 SATB1 6304
Co-fractionation Homo sapiens
74 NCOR2  
Co-purification Homo sapiens
75 MBD3L1  
Affinity Capture-Western Homo sapiens
76 SUV39H1  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
77 DAXX  
Far Western Homo sapiens
78 SDS3  
Affinity Capture-Western Homo sapiens
79 DNMT1 1786
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
80 RCOR1  
Co-purification Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
81 SMARCB1 6598
Co-purification Homo sapiens
82 EED  
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-Western Homo sapiens
83 SP3  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
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