Gene description for RB1
Gene name retinoblastoma 1
Gene symbol RB1
Other names/aliases OSRC
PPP1R130
RB
p105-Rb
pRb
pp110
Species Homo sapiens
 Database cross references - RB1
ExoCarta ExoCarta_5925
Entrez Gene 5925
HGNC 9884
MIM 614041
UniProt P06400  
 RB1 identified in exosomes derived from the following tissue/cell type
Endothelial cells 26027894    
 Gene ontology annotations for RB1
Molecular Function
    protein binding GO:0005515 IPI
    phosphoprotein binding GO:0051219 IPI
    sequence-specific DNA binding transcription factor activity GO:0003700 TAS
    androgen receptor binding GO:0050681 NAS
    kinase binding GO:0019900 IDA
    core promoter binding GO:0001047 IDA
    transcription coactivator activity GO:0003713 NAS
    identical protein binding GO:0042802 IPI
    RNA polymerase II activating transcription factor binding GO:0001102 IEA
    DNA binding GO:0003677 TAS
    ubiquitin protein ligase binding GO:0031625 IPI
    transcription factor binding GO:0008134 IPI
Biological Process
    striated muscle cell differentiation GO:0051146 IEA
    androgen receptor signaling pathway GO:0030521 NAS
    neuron maturation GO:0042551 IEA
    regulation of lipid kinase activity GO:0043550 IDA
    mitotic cell cycle checkpoint GO:0007093 TAS
    negative regulation of epithelial cell proliferation GO:0050680 IEA
    sister chromatid biorientation GO:0031134 IMP
    cell morphogenesis involved in neuron differentiation GO:0048667 IEA
    glial cell apoptotic process GO:0034349 IEA
    positive regulation of transcription, DNA-templated GO:0045893 NAS
    regulation of mitotic cell cycle GO:0007346 IMP
    neuron apoptotic process GO:0051402 IEA
    regulation of transcription involved in G1/S transition of mitotic cell cycle GO:0000083 TAS
    maintenance of mitotic sister chromatid cohesion GO:0034088 IMP
    positive regulation of macrophage differentiation GO:0045651 IEA
    G1/S transition of mitotic cell cycle GO:0000082 TAS
    regulation of cohesin localization to chromatin GO:0071922 IMP
    negative regulation of protein kinase activity GO:0006469 IPI
    positive regulation of transcription from RNA polymerase II promoter GO:0045944 IEA
    digestive tract development GO:0048565 IEA
    negative regulation of transcription involved in G1/S transition of mitotic cell cycle GO:0071930 IEA
    negative regulation of transcription from RNA polymerase II promoter during mitosis GO:0007070 TAS
    hepatocyte apoptotic process GO:0097284 IEA
    skeletal muscle cell differentiation GO:0035914 IEA
    mitotic cell cycle GO:0000278 TAS
    negative regulation of G1/S transition of mitotic cell cycle GO:2000134 TAS
    cell cycle arrest GO:0007050 TAS
    chromatin remodeling GO:0006338 TAS
    cell division GO:0051301 IEA
    regulation of centromere complex assembly GO:0090230 TAS
    negative regulation of transcription, DNA-templated GO:0045892 TAS
    transcription, DNA-templated GO:0006351 IEA
    myoblast differentiation GO:0045445 IMP
    enucleate erythrocyte differentiation GO:0043353 IEA
    negative regulation of sequence-specific DNA binding transcription factor activity GO:0043433 TAS
    neuron projection development GO:0031175 IEA
    protein localization to chromosome, centromeric region GO:0071459 IMP
    negative regulation of smoothened signaling pathway GO:0045879 IEA
    Ras protein signal transduction GO:0007265 IEP
    positive regulation of mitotic metaphase/anaphase transition GO:0045842 IMP
    cell cycle checkpoint GO:0000075 TAS
    viral process GO:0016032 IEA
Subcellular Localization
    SWI/SNF complex GO:0016514 TAS
    spindle GO:0005819 IEA
    chromatin GO:0000785 TAS
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 TAS
    PML body GO:0016605 IDA
    Rb-E2F complex GO:0035189 TAS
 Experiment description of studies that identified RB1 in exosomes
1
Experiment ID 226
ISEV standards
EM
EV Biophysical techniques
GAPDH
EV Cytosolic markers
CD9|FLOT1
EV Membrane markers
LMNA|H2AFX|ATP5A1|TOMM20
EV Negative markers
EV Particle analysis
Identified molecule mRNA
Identification method Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID 26027894    
Organism Homo sapiens
Experiment description Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting
Authors Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar
Journal name Journal of Extracellular Vesicles
Publication year 2015
Sample Endothelial cells
Sample name HMEC-1
Isolation/purification methods Differential ultracentrifugation
Sucrose density gradient
Flotation density 1.10 g/mL
Molecules identified in the study miRNA
Protein
snoRNA
lncRNA
yRNA
snRNA
mRNA
ncRNA
mtRNA
vtRNA
scaRNA
lincRNA
Methods used in the study Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
Western blotting
 Protein-protein interactions for RB1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 FRK 2444
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
2 MCM7 4176
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
3 NCOA6  
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
4 CBX1 10951
Reconstituted Complex Homo sapiens
5 HDAC2 3066
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
6 ELF1 1997
Affinity Capture-MS Homo sapiens
7 AATF  
Invivo Homo sapiens
Invitro Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
8 RBL2 5934
Affinity Capture-Western Homo sapiens
9 SP1  
Affinity Capture-Western Homo sapiens
Invivo Homo sapiens
10 POLA  
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
11 E2F1 1869
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Invivo Homo sapiens
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
12 BRCA1 672
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
13 PPIA 5478
Affinity Capture-MS Homo sapiens
14 ARID3B  
Reconstituted Complex Homo sapiens
15 TAF1  
Invivo Homo sapiens
Invitro Homo sapiens
Phenotypic Suppression Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
16 MYOD1  
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
17 SNAPC3 6619
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
18 E2F2 1870
Affinity Capture-MS Homo sapiens
Invitro Homo sapiens
19 CRI1  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
20 HDAC3 8841
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
21 SP3  
Invivo Homo sapiens
22 SUV39H1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
23 PRKRA 8575
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
24 RBBP5  
Invitro Homo sapiens
25 PHB 5245
Affinity Capture-MS Homo sapiens
Invivo Homo sapiens
Invitro Homo sapiens
Two-hybrid Homo sapiens
26 E4F1  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
27 VDR  
Reconstituted Complex Homo sapiens
28 THOC1 9984
Invivo Homo sapiens
Invitro Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
29 RB1 5925
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
30 E2F4  
Invivo Homo sapiens
Two-hybrid Homo sapiens
31 PPP1CA 5499
Affinity Capture-MS Homo sapiens
32 RBBP7 5931
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
33 SKIIP  
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
34 TGM2 7052
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
35 CTBP1 1487
Affinity Capture-MS Homo sapiens
36 DNMT3A 1788
Reconstituted Complex Homo sapiens
37 NFIX 4784
Affinity Capture-Western Homo sapiens
38 ATF2  
Reconstituted Complex Homo sapiens
39 PRDM2  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
40 SMARCA4 6597
Affinity Capture-Western Homo sapiens
41 MNAT1  
Affinity Capture-MS Homo sapiens
Invitro Homo sapiens
Invivo Homo sapiens
42 CBX5 23468
Affinity Capture-Western Homo sapiens
43 GTF3C2  
Affinity Capture-MS Homo sapiens
44 UBTF 7343
Invivo Homo sapiens
Invitro Homo sapiens
45 PELP1 27043
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
46 ENC1  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
47 CREG1 8804
Reconstituted Complex Homo sapiens
48 ARID4A  
Affinity Capture-Western Homo sapiens
Invivo Homo sapiens
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
49 RBL1  
Affinity Capture-Western Homo sapiens
50 CBX4  
Phenotypic Enhancement Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
51 TMPO 7112
Affinity Capture-Western Homo sapiens
52 BRF1  
Affinity Capture-Western Homo sapiens
53 SPIB  
Affinity Capture-MS Homo sapiens
54 SNAPC1 6617
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
55 PPARG 5468
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
56 MORF4L1  
Reconstituted Complex Homo sapiens
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
57 TP73  
Affinity Capture-Western Homo sapiens
58 RBBP4 5928
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
59 RING1  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
60 RFC1 5981
Affinity Capture-Western Homo sapiens
61 PIK3R3  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
62 JUN 3725
Invitro Homo sapiens
Invivo Homo sapiens
63 CDK2 1017
Affinity Capture-MS Homo sapiens
Biochemical Activity Homo sapiens
64 JARID1A  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
65 LIN9  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
66 FOS 2353
Affinity Capture-MS Homo sapiens
67 MYC  
Two-hybrid Homo sapiens
68 BAG1 573
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
69 PML  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
70 AHR 196
Invivo Homo sapiens
Invitro Homo sapiens
71 MRFAP1  
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
72 NDC80 10403
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
73 RAF1 5894
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
74 CCNA1  
Invivo Homo sapiens
Invitro Homo sapiens
Affinity Capture-MS Homo sapiens
75 CCND1 595
Reconstituted Complex Homo sapiens
Phenotypic Suppression Homo sapiens
Affinity Capture-Western Homo sapiens
76 LMNA 4000
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
77 MDM2  
Invitro Homo sapiens
Invitro Homo sapiens
Invitro Homo sapiens
78 RBBP8  
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
79 PA2G4 5036
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
80 HMGB1 3146
Affinity Capture-MS Homo sapiens
Invitro Homo sapiens
81 CUTL1  
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
82 ABL1 25
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
83 MORF4L2  
Reconstituted Complex Homo sapiens
84 HBP1  
Invivo Homo sapiens
Invitro Homo sapiens
Two-hybrid Homo sapiens
85 HDAC1 3065
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
86 SERPINB2  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
87 TRIP11 9321
Invivo Homo sapiens
Invitro Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
88 TRAP1 10131
Invivo Homo sapiens
Invitro Homo sapiens
Two-hybrid Homo sapiens
89 RBBP9  
Invivo Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
90 CDK4 1019
Affinity Capture-MS Homo sapiens
91 MAPK9 5601
Affinity Capture-MS Homo sapiens
92 CDK9 1025
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
93 CCNT2  
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
94 CEBPB  
Invivo Homo sapiens
95 GNB2L1 10399
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
96 AR 367
Invitro Homo sapiens
Reconstituted Complex Homo sapiens
97 DNMT1 1786
Co-fractionation Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
98 Smarca4  
Reconstituted Complex Mus musculus
Reconstituted Complex Mus musculus
99 BCR 613
Affinity Capture-Western Homo sapiens
100 CCND3  
Two-hybrid Homo sapiens
View the network image/svg+xml



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