Gene description for HDAC3
Gene name histone deacetylase 3
Gene symbol HDAC3
Other names/aliases HD3
RPD3
RPD3-2
Species Homo sapiens
 Database cross references - HDAC3
ExoCarta ExoCarta_8841
Entrez Gene 8841
HGNC 4854
MIM 605166
UniProt O15379  
 HDAC3 identified in exosomes derived from the following tissue/cell type
Ovarian cancer cells 23333927    
Ovarian cancer cells 23333927    
 Gene ontology annotations for HDAC3
Molecular Function
    NAD-dependent histone deacetylase activity (H3-K18 specific) GO:0097372 IEA
    chromatin binding GO:0003682 IDA
    histone deacetylase binding GO:0042826 IPI
    transcription corepressor activity GO:0003714 ISS
    cyclin binding GO:0030332 IPI
    NF-kappaB binding GO:0051059 IPI
    NAD-dependent histone deacetylase activity (H3-K9 specific) GO:0046969 IEA
    enzyme binding GO:0019899 IPI
    transcription factor binding GO:0008134 TAS
    histone deacetylase activity GO:0004407 TAS
    protein deacetylase activity GO:0033558 IDA
    protein binding GO:0005515 IPI
    chromatin DNA binding GO:0031490 IEA
    NAD-dependent histone deacetylase activity (H4-K16 specific) GO:0046970 IEA
    NAD-dependent histone deacetylase activity (H3-K14 specific) GO:0032041 IEA
Biological Process
    histone H3-K9 modification GO:0061647 IEA
    circadian regulation of gene expression GO:0032922 IEA
    negative regulation of transcription, DNA-templated GO:0045892 IMP
    negative regulation of apoptotic process GO:0043066 TAS
    protein deacetylation GO:0006476 IDA
    cellular response to fluid shear stress GO:0071498 IDA
    histone H3-K9 deacetylation GO:1990619 IEA
    spindle assembly GO:0051225 IMP
    positive regulation of transcription factor import into nucleus GO:0042993 IDA
    transcription, DNA-templated GO:0006351 IEA
    small molecule metabolic process GO:0044281 TAS
    negative regulation of myotube differentiation GO:0010832 IMP
    neurotrophin TRK receptor signaling pathway GO:0048011 TAS
    negative regulation of JNK cascade GO:0046329 IMP
    Notch signaling pathway GO:0007219 TAS
    regulation of mitotic cell cycle GO:0007346 IEA
    chromatin modification GO:0016568 TAS
    negative regulation of cell cycle GO:0045786 TAS
    circadian rhythm GO:0007623 TAS
    positive regulation of protein phosphorylation GO:0001934 IDA
    histone H4 deacetylation GO:0070933 IEA
    negative regulation of transcription from RNA polymerase II promoter GO:0000122 IMP
    cellular lipid metabolic process GO:0044255 TAS
    chromatin organization GO:0006325 TAS
    regulation of multicellular organism growth GO:0040014 IEA
    regulation of protein stability GO:0031647 IDA
    positive regulation of TOR signaling GO:0032008 IMP
    positive regulation of transcription from RNA polymerase II promoter GO:0045944 IDA
    negative regulation of nucleic acid-templated transcription GO:1903507 ISS
Subcellular Localization
    cytoplasm GO:0005737 TAS
    nucleus GO:0005634 TAS
    transcriptional repressor complex GO:0017053 IDA
    histone deacetylase complex GO:0000118 TAS
    nucleoplasm GO:0005654 TAS
    spindle microtubule GO:0005876 IDA
    plasma membrane GO:0005886 IDA
    Golgi apparatus GO:0005794 IDA
 Experiment description of studies that identified HDAC3 in exosomes
1
Experiment ID 211
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix
EV Cytosolic markers
EpCAM|TFRC
EV Membrane markers
cytochrome c|GOLGA2
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name IGROV1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 212
ISEV standards
CEM
EV Biophysical techniques
TSG101|Alix
EV Cytosolic markers
EpCAM|TFRC
EV Membrane markers
Cytochrome C|GOLGA2
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name OVCAR-3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for HDAC3
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 GATA1  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
2 RBL1  
Affinity Capture-Western Homo sapiens
3 Nrip1  
Affinity Capture-Western Mus musculus
Reconstituted Complex Mus musculus
Affinity Capture-Western Mus musculus
4 NR2C1  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
5 HDAC4  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Co-fractionation Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
6 RARA 5914
Reconstituted Complex Homo sapiens
7 HDAC7A  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
8 ZNFN1A1  
Affinity Capture-Western Homo sapiens
9 CBFA2T3  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
10 GTF2I 2969
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
11 HSPA8 3312
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
12 BCOR  
Affinity Capture-Western Homo sapiens
13 MAP3K7IP2  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
14 DAXX  
Far Western Homo sapiens
15 Miz1  
Affinity Capture-Western Mus musculus
16 GTF2IRD1  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
17 RB1 5925
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
18 PPARG 5468
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
19 XPO1 7514
Affinity Capture-Western Homo sapiens
20 GATA2  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
21 SF3B1 23451
Affinity Capture-MS Homo sapiens
22 HDAC9  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
23 JUN 3725
Affinity Capture-Western Homo sapiens
24 RELA  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
25 VHL  
Reconstituted Complex Homo sapiens
26 YY1 7528
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
27 ZBTB16  
Reconstituted Complex Homo sapiens
28 CTBP1 1487
Reconstituted Complex Homo sapiens
29 NR2C2  
Reconstituted Complex Homo sapiens
30 NCOR2  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
Co-purification Homo sapiens
Co-purification Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
31 RBBP4 5928
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
32 CCT5 22948
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
33 HDAC1 3065
Affinity Capture-MS Homo sapiens
34 HIF1A  
Reconstituted Complex Homo sapiens
35 HDAC10  
Affinity Capture-Western Homo sapiens
36 RUNX1T1  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
37 RXRA  
Reconstituted Complex Homo sapiens
38 Ncor1  
Reconstituted Complex Mus musculus
39 HDAC3 8841
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
40 ZBTB33  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
41 Ncor2  
Reconstituted Complex Mus musculus
42 NCOR1  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
Reconstituted Complex Homo sapiens
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
43 HR  
Affinity Capture-Western Homo sapiens
44 TBL1XR1 79718
Affinity Capture-MS Homo sapiens
45 PIAS2  
Affinity Capture-MS Homo sapiens
46 RUNX2  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
47 PPARD  
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
48 ANKRD11 29123
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
49 TBL1X 6907
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
50 HSPA4 3308
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
51 SUV39H1  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
52 AR 367
Reconstituted Complex Homo sapiens
53 CCND1 595
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
54 TNFRSF14  
Affinity Capture-MS Homo sapiens
55 HDAC5 10014
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
56 TCP1 6950
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
57 MAPK11  
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Far Western Homo sapiens
Reconstituted Complex Homo sapiens
58 HIF1AN  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
59 GPS2  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
60 PML  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
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