Gene description for CDK4
Gene name cyclin-dependent kinase 4
Gene symbol CDK4
Other names/aliases CMM3
PSK-J3
Species Homo sapiens
 Database cross references - CDK4
ExoCarta ExoCarta_1019
Entrez Gene 1019
HGNC 1773
MIM 123829
UniProt P11802  
 CDK4 identified in exosomes derived from the following tissue/cell type
Ovarian cancer cells 23333927    
Ovarian cancer cells 23333927    
 Gene ontology annotations for CDK4
Molecular Function
    cyclin-dependent protein serine/threonine kinase activity GO:0004693 IDA
    cyclin binding GO:0030332 IPI
    ATP binding GO:0005524 IEA
    cyclin-dependent protein serine/threonine kinase regulator activity GO:0016538 TAS
    protein complex binding GO:0032403 IEA
    protein binding GO:0005515 IPI
Biological Process
    positive regulation of apoptotic process GO:0043065 IEA
    response to hyperoxia GO:0055093 IEA
    circadian rhythm GO:0007623 IEA
    regulation of gene expression GO:0010468 IMP
    organ regeneration GO:0031100 IEA
    chromatin organization GO:0006325 TAS
    positive regulation of fibroblast proliferation GO:0048146 IMP
    mitotic cell cycle GO:0000278 TAS
    G1/S transition of mitotic cell cycle GO:0000082 IMP
    cell division GO:0051301 IEA
    positive regulation of translation GO:0045727 IEA
    positive regulation of cell size GO:0045793 IEA
    response to drug GO:0042493 IGI
    response to toxic substance GO:0009636 IEA
    protein phosphorylation GO:0006468 IDA
    signal transduction GO:0007165 IEA
    lens development in camera-type eye GO:0002088 IEA
    response to testosterone GO:0033574 IEA
    positive regulation of G2/M transition of mitotic cell cycle GO:0010971 IDA
    response to lead ion GO:0010288 IEA
    regulation of protein kinase activity GO:0045859 TAS
    positive regulation of cell proliferation GO:0008284 IMP
    negative regulation of cell cycle arrest GO:0071157 IDA
Subcellular Localization
    perinuclear region of cytoplasm GO:0048471 IEA
    nuclear membrane GO:0031965 IDA
    nucleolus GO:0005730 IDA
    chromatin GO:0000785 IDA
    cyclin-dependent protein kinase holoenzyme complex GO:0000307 IDA
    nucleus GO:0005634 IDA
    bicellular tight junction GO:0005923 IEA
    transcription factor complex GO:0005667 IEA
    nucleoplasm GO:0005654 TAS
    cytosol GO:0005829 TAS
 Experiment description of studies that identified CDK4 in exosomes
1
Experiment ID 211
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix
EV Cytosolic markers
EpCAM|TFRC
EV Membrane markers
cytochrome c|GOLGA2
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name IGROV1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 212
ISEV standards
CEM
EV Biophysical techniques
TSG101|Alix
EV Cytosolic markers
EpCAM|TFRC
EV Membrane markers
Cytochrome C|GOLGA2
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23333927    
Organism Homo sapiens
Experiment description Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name J Proteomics
Publication year 2013
Sample Ovarian cancer cells
Sample name OVCAR-3
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.09-1.15 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for CDK4
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 CNOT7 29883
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
2 IFI27  
Invivo Homo sapiens
Affinity Capture-MS Homo sapiens
3 SMC3 9126
Affinity Capture-MS Homo sapiens
4 CCND2  
Affinity Capture-MS Homo sapiens
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
5 RFC1 5981
Affinity Capture-Western Homo sapiens
6 PCNA 5111
Affinity Capture-Western Homo sapiens
7 PTMA 5757
Invitro Homo sapiens
Affinity Capture-MS Homo sapiens
8 RB1 5925
Affinity Capture-MS Homo sapiens
9 CDC37 11140
Invivo Homo sapiens
Invitro Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
10 BRCA1 672
Invivo Homo sapiens
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
11 DBNL 28988
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
12 CDKN1A  
Affinity Capture-MS Homo sapiens
13 VTA1 51534
Two-hybrid Homo sapiens
14 PSMD10 5716
Invivo Homo sapiens
Affinity Capture-MS Homo sapiens
15 SETDB1  
Two-hybrid Homo sapiens
16 CDKN2A  
Invitro Homo sapiens
Protein-peptide Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
17 LYN 4067
Affinity Capture-MS Homo sapiens
18 MYOD1  
Invitro Homo sapiens
Invitro Homo sapiens
Invivo Homo sapiens
Invivo Homo sapiens
19 BAG6 7917
Two-hybrid Homo sapiens
20 GEMIN4 50628
Affinity Capture-MS Homo sapiens
21 CAPNS1 826
Two-hybrid Homo sapiens
22 ACTR3B 57180
Affinity Capture-MS Homo sapiens
23 SERTAD1  
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
24 CDKN2B 1030
Invivo Homo sapiens
Invivo Homo sapiens
Invitro Homo sapiens
Invitro Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
25 RPRM  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
26 MCM2 4171
Affinity Capture-MS Homo sapiens
27 SMAD3  
Affinity Capture-MS Homo sapiens
28 RFC4 5984
Affinity Capture-MS Homo sapiens
29 SMC1A 8243
Affinity Capture-MS Homo sapiens
30 CDKN2D  
Two-hybrid Homo sapiens
31 CDKN1B 1027
Invitro Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
32 CCND1 595
Affinity Capture-Western Homo sapiens
Invivo Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
33 CEBPA  
Invivo Homo sapiens
34 UBXN1 51035
Affinity Capture-MS Homo sapiens
35 CDKN2C  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
36 BIRC5  
Invitro Homo sapiens
Affinity Capture-MS Homo sapiens
37 CCND3  
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
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