Gene ontology annotations for ERBB2
Experiment description of studies that identified ERBB2 in exosomes
1
Experiment ID
19
ISEV standards
✔
EM
EV Biophysical techniques
✘
EV Cytosolic markers
✘
EV Membrane markers
✘
EV Negative markers
✘
EV Particle analysis
Identified molecule
protein
Identification method
Western blotting FACS
PubMed ID
16302729
Organism
Homo sapiens
Experiment description
Purification, characterization and biological significance of tumor-derived exosomes.
Authors
Koga K, Matsumoto K, Akiyoshi T, Kubo M, Yamanaka N, Tasaki A, Nakashima H, Nakamura M, Kuroki S, Tanaka M, Katano M
Journal name
ACR
Publication year
2005
Sample
Breast cancer cells
Sample name
BT-474 MDA-MB-231
Isolation/purification methods
Differential centrifugation Sucrose density gradient Filtration Immunobeads(HER2)
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting FACS
2
Experiment ID
207
ISEV standards
✔
EM
EV Biophysical techniques
✔
TSG101|HSP70
EV Cytosolic markers
✔
FLOT1
EV Membrane markers
✔
VDAC
EV Negative markers
✔
NTA
EV Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23161513
Organism
Homo sapiens
Experiment description
Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors
Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ.
Journal name
Mol Cell Proteomics
Publication year
2012
Sample
Colorectal cancer cells
Sample name
DKO-1
Isolation/purification methods
Differential centrifugation Filtration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
3
Experiment ID
208
ISEV standards
✔
EM
EV Biophysical techniques
✔
TSG101|HSP70
EV Cytosolic markers
✔
FLOT1
EV Membrane markers
✔
VDAC
EV Negative markers
✔
NTA
EV Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23161513
Organism
Homo sapiens
Experiment description
Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors
Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ.
Journal name
Mol Cell Proteomics
Publication year
2012
Sample
Colorectal cancer cells
Sample name
Dks-8
Isolation/purification methods
Differential centrifugation Filtration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
4
Experiment ID
209
ISEV standards
✘
EV Biophysical techniques
✔
TSG101|HSP70
EV Cytosolic markers
✔
FLOT1
EV Membrane markers
✔
VDAC
EV Negative markers
✔
NTA
EV Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23161513
Organism
Homo sapiens
Experiment description
Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors
Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ.
Journal name
Mol Cell Proteomics
Publication year
2012
Sample
Colorectal cancer cells
Sample name
DLD-1
Isolation/purification methods
Differential centrifugation Filtration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
5
Experiment ID
226
ISEV standards
✔
EM
EV Biophysical techniques
✔
GAPDH
EV Cytosolic markers
✔
CD9|FLOT1
EV Membrane markers
✔
LMNA|H2AFX|ATP5A1|TOMM20
EV Negative markers
✘
EV Particle analysis
Identified molecule
mRNA
Identification method
Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID
26027894
Organism
Homo sapiens
Experiment description
Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting
Authors
Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar
Journal name
Journal of Extracellular Vesicles
Publication year
2015
Sample
Endothelial cells
Sample name
HMEC-1
Isolation/purification methods
Differential ultracentrifugation Sucrose density gradient
Flotation density
1.10 g/mL
Molecules identified in the study
miRNA Protein snoRNA lncRNA yRNA snRNA mRNA ncRNA mtRNA vtRNA scaRNA lincRNA
Methods used in the study
Small RNA sequencing (Illumina HiSeq 2000 (Solexa) Western blotting
6
Experiment ID
56
ISEV standards
✔
EM
EV Biophysical techniques
✔
HSC70
EV Cytosolic markers
✔
MHCI|MHCII
EV Membrane markers
✘
EV Negative markers
✘
EV Particle analysis
Identified molecule
protein
Identification method
Western blotting
PubMed ID
12147373
Organism
Homo sapiens
Experiment description
Malignant effusions and immunogenic tumour-derived exosomes.
Authors
Andre F, Schartz NE, Movassagh M, Flament C, Pautier P, Morice P, Pomel C, Lhomme C, Escudier B, Le Chevalier T, Tursz T, Amigorena S, Raposo G, Angevin E, Zitvogel L
Journal name
LANCET
Publication year
2002
Sample
Malignant ascites
Sample name
Malignant ascites
Isolation/purification methods
Differential centrifugation Sucrose density gradient
Flotation density
1.14-1.18 g/mL
Molecules identified in the study
Protein
Methods used in the study
Western blotting
7
Experiment ID
211
ISEV standards
✔
EM
EV Biophysical techniques
✔
TSG101|Alix
EV Cytosolic markers
✔
EpCAM|TFRC
EV Membrane markers
✔
cytochrome c|GOLGA2
EV Negative markers
✘
EV Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
IGROV1
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
8
Experiment ID
212
ISEV standards
✔
CEM
EV Biophysical techniques
✔
TSG101|Alix
EV Cytosolic markers
✔
EpCAM|TFRC
EV Membrane markers
✔
Cytochrome C|GOLGA2
EV Negative markers
✘
EV Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K.
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
OVCAR-3
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
9
Experiment ID
191
ISEV standards
✘
EV Biophysical techniques
✔
Alix
EV Cytosolic markers
✔
CD81|CD9
EV Membrane markers
✘
EV Negative markers
✘
EV Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20124223
Organism
Homo sapiens
Experiment description
Hypoxic tumor cell modulates its microenvironment to enhance angiogenic and metastatic potential by secretion of proteins and exosomes.
Authors
Park JE, Tan HS, Datta A, Lai RC, Zhang H, Meng W, Lim SK, Sze SK.
Journal name
Mol Cell Proteomics
Publication year
2010
Sample
Squamous carcinoma cells
Sample name
Squamous carcinoma cell (A431)
Isolation/purification methods
Differential centrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for ERBB2
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
EGF
1950
Reconstituted Complex
Homo sapiens
2
PTPN11
5781
Affinity Capture-MS
Homo sapiens
3
SH3BGRL
6451
Affinity Capture-MS
Homo sapiens
4
ERBB2
2064
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
5
GRB2
2885
Affinity Capture-Western
Homo sapiens
Affinity Capture-MS
Homo sapiens
6
SHC1
6464
Affinity Capture-Western
Homo sapiens
Invivo
Homo sapiens
Invitro
Homo sapiens
Affinity Capture-MS
Homo sapiens
7
JUP
3728
Far Western
Homo sapiens
8
ERBB2IP
55914
Reconstituted Complex
Homo sapiens
Two-hybrid
Homo sapiens
Affinity Capture-Western
Homo sapiens
Reconstituted Complex
Homo sapiens
Affinity Capture-Western
Homo sapiens
Two-hybrid
Homo sapiens
9
CTNNB1
1499
Affinity Capture-Western
Homo sapiens
Co-localization
Homo sapiens
Reconstituted Complex
Homo sapiens
Far Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
10
SOS1
Invivo
Homo sapiens
Invivo
Homo sapiens
Invitro
Homo sapiens
11
ERBB4
2066
Affinity Capture-Western
Homo sapiens
12
EGFR
1956
Invivo
Homo sapiens
Invitro
Homo sapiens
13
DLG4
Two-hybrid
Homo sapiens
Co-fractionation
Homo sapiens
Affinity Capture-Western
Homo sapiens
14
HSP90AA1
3320
Invivo
Homo sapiens
15
ERBB3
2065
Invivo
Homo sapiens
16
HLA-A
Invitro
Homo sapiens
17
JAK2
3717
Affinity Capture-Western
Homo sapiens
18
GRB7
2886
Invivo
Homo sapiens
Invitro
Homo sapiens
19
IL6ST
3572
Invivo
Homo sapiens
20
PTK2
5747
Invivo
Homo sapiens
21
NRG1
Reconstituted Complex
Homo sapiens
22
PRKCABP
Affinity Capture-Western
Homo sapiens
Two-hybrid
Homo sapiens
23
PTK2B
2185
Invivo
Homo sapiens
24
PIK3R2
Reconstituted Complex
Homo sapiens
Biochemical Activity
Homo sapiens
25
1300002F13Rik
Two-hybrid
Mus musculus
26
MUC1
4582
Invivo
Homo sapiens
Affinity Capture-Western
Homo sapiens
Co-localization
Homo sapiens
27
PAK1
Affinity Capture-Western
Homo sapiens
28
SRC
6714
Reconstituted Complex
Homo sapiens
Invivo
Homo sapiens
29
STAT3
6774
Affinity Capture-Western
Homo sapiens
30
Errfi1
Reconstituted Complex
Mus musculus
31
PLCG1
5335
Invivo
Homo sapiens
Invivo
Homo sapiens
32
CAV1
857
Invivo
Homo sapiens
Invitro
Homo sapiens
33
HSP90B1
7184
Invitro
Homo sapiens
34
1300002F13Rik
Affinity Capture-Western
Mus musculus
35
CD82
3732
Affinity Capture-Western
Homo sapiens
View the network
image/svg+xml
Pathways in which ERBB2 is involved