Gene ontology annotations for EFNB1 |
|
Experiment description of studies that identified EFNB1 in exosomes |
1 |
Experiment ID |
489 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
|
Enriched markers |
✔
Canx
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
36408942
|
Organism |
Rattus norvegicus |
Experiment description |
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells |
Authors |
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ." |
Journal name |
Proteomics
|
Publication year |
2023 |
Sample |
Bone marrow mesenchymal stem cells |
Sample name |
BMSC - Passage 6 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
2 |
Experiment ID |
490 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
|
Enriched markers |
✔
Canx
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
36408942
|
Organism |
Rattus norvegicus |
Experiment description |
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells |
Authors |
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ." |
Journal name |
Proteomics
|
Publication year |
2023 |
Sample |
Bone marrow mesenchymal stem cells |
Sample name |
BMSC - Passage 7 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
3 |
Experiment ID |
491 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
|
Enriched markers |
✔
Canx
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
36408942
|
Organism |
Rattus norvegicus |
Experiment description |
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells |
Authors |
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ." |
Journal name |
Proteomics
|
Publication year |
2023 |
Sample |
Bone marrow mesenchymal stem cells |
Sample name |
BMSC - Passage 8 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
4 |
Experiment ID |
492 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
|
Enriched markers |
✔
Canx
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
36408942
|
Organism |
Rattus norvegicus |
Experiment description |
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells |
Authors |
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ." |
Journal name |
Proteomics
|
Publication year |
2023 |
Sample |
Bone marrow mesenchymal stem cells |
Sample name |
BMSC - Passage 9 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
5 |
Experiment ID |
20 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
HSP90|CD63|CD81|LAMP1
|
Enriched markers |
✔
GOLGA2|cytochrome c
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
17956143
|
Organism |
Homo sapiens |
Experiment description |
Proteomic analysis of microvesicles derived from human colorectal cancer cells. |
Authors |
"Choi DS, Lee JM, Park GW, Lim HW, Bang JY, Kim YK, Kwon KH, Kwon HJ, Kim KP, Gho YS" |
Journal name |
JPR
|
Publication year |
2007 |
Sample |
Colorectal cancer cells |
Sample name |
HT29 |
Isolation/purification methods |
Differential centrifugation Sucrose density gradient Diafiltration |
Flotation density |
1.16 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry [LTQ] Western blotting |
|
|
6 |
Experiment ID |
21 |
MISEV standards |
✔
EM|IEM
|
Biophysical techniques |
✔
Alix|TSG101|HSP70|CD63
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
|
PubMed ID |
19837982
|
Organism |
Homo sapiens |
Experiment description |
Proteomic and bioinformatic analysis of immunoaffinity-purified exosomes derived from the human colon tumor cell line LIM1215. |
Authors |
"Suresh Mathivanan, Justin W.E. Lim, Bow J. Tauro, Hong Ji, Robert L. Moritz and Richard J. Simpson" |
Journal name |
MCP
|
Publication year |
2009 |
Sample |
Colorectal cancer cells |
Sample name |
LIM1215 |
Isolation/purification methods |
Filtration Ultracentrifugation Sucrose density gradient |
Flotation density |
1.10-1.12 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry [Orbitrap] Western blotting |
|
|
7 |
Experiment ID |
201 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Alix|TSG101|HSP70|CD9
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
22740476
|
Organism |
Homo sapiens |
Experiment description |
Restoration of full-length APC protein in SW480 colon cancer cells induces exosome-mediated secretion of DKK-4. |
Authors |
"Lim JW, Mathias RA, Kapp EA, Layton MJ, Faux MC, Burgess AW, Ji H, Simpson RJ." |
Journal name |
Electrophoresis
|
Publication year |
2012 |
Sample |
Colorectal cancer cells |
Sample name |
SW480 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
8 |
Experiment ID |
1203 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
SDCBP|FLOT1|CD9|CD81|CD63|EPCAM|GAPDH|LAMP1|TFRC|CD151|CD82|LAMP2|RAB35|TSG101|FLOT2|RAB5B|ICAM1|RAB5A
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
34887515
|
Organism |
Homo sapiens |
Experiment description |
Supermeres are functional extracellular nanoparticles replete with disease biomarkers and therapeutic targets |
Authors |
"Zhang Q, Jeppesen DK, Higginbotham JN, Graves-Deal R, Trinh VQ, Ramirez MA, Sohn Y, Neininger AC, Taneja N, McKinley ET, Niitsu H, Cao Z, Evans R, Glass SE, Ray KC, Fissell WH, Hill S, Rose KL, Huh WJ, Washington MK, Ayers GD, Burnette DT, Sharma S, Rome LH, Franklin JL, Lee YA, Liu Q, Coffey RJ." |
Journal name |
Nat Cell Biol
|
Publication year |
2021 |
Sample |
Colorectal cancer cells |
Sample name |
DiFi |
Isolation/purification methods |
Differential centrifugation Filtration Centrifugal ultrafiltration Ultracentrifugation OptiPrep density gradient centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein miRNA |
Methods used in the study |
Western blotting Mass spectrometry RNA sequencing |
|
|
9 |
Experiment ID |
363 |
MISEV standards |
✘
|
Biophysical techniques |
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
|
Enriched markers |
✔
DCLK1
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
33991177
|
Organism |
Homo sapiens |
Experiment description |
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells |
Authors |
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M." |
Journal name |
Proteomics
|
Publication year |
2021 |
Sample |
Gastric cancer cells |
Sample name |
MKN1 - 100K pellet |
Isolation/purification methods |
Differential centrifugation Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
10 |
Experiment ID |
364 |
MISEV standards |
✘
|
Biophysical techniques |
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
|
Enriched markers |
✔
DCLK1
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
33991177
|
Organism |
Homo sapiens |
Experiment description |
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells |
Authors |
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M." |
Journal name |
Proteomics
|
Publication year |
2021 |
Sample |
Gastric cancer cells |
Sample name |
MKN1 - 100K pellet |
Isolation/purification methods |
Differential centrifugation Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
11 |
Experiment ID |
365 |
MISEV standards |
✘
|
Biophysical techniques |
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
|
Enriched markers |
✔
DCLK1
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
33991177
|
Organism |
Homo sapiens |
Experiment description |
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells |
Authors |
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M." |
Journal name |
Proteomics
|
Publication year |
2021 |
Sample |
Gastric cancer cells |
Sample name |
MKN1 - 100K pellet |
Isolation/purification methods |
Differential centrifugation Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
12 |
Experiment ID |
219 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
CD63|CD9
|
Enriched markers |
✔
HSP90B1
|
Negative markers |
✔
qNano
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25857718
|
Organism |
Homo sapiens |
Experiment description |
Proteomic analysis of exosomes from nasopharyngeal carcinoma cell identifies intercellular transfer of angiogenic proteins |
Authors |
"Chan YK, Zhang H, Liu P, Tsao GS, Li Lung M, Mak NK, Ngok-Shun Wong R, Ying-Kit Yue P" |
Journal name |
Int J Cancer
|
Publication year |
2015 |
Sample |
Nasopharyngeal carcinoma cells |
Sample name |
C666-1 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Sucrose density gradient |
Flotation density |
1.17-1.19 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
13 |
Experiment ID |
220 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
CD63|CD9
|
Enriched markers |
✔
HSP90B1
|
Negative markers |
✔
qNano
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25857718
|
Organism |
Homo sapiens |
Experiment description |
Proteomic analysis of exosomes from nasopharyngeal carcinoma cell identifies intercellular transfer of angiogenic proteins |
Authors |
"Chan YK, Zhang H, Liu P, Tsao GS, Li Lung M, Mak NK, Ngok-Shun Wong R, Ying-Kit Yue P" |
Journal name |
Int J Cancer
|
Publication year |
2015 |
Sample |
Nasopharyngeal carcinoma cells |
Sample name |
NP69 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Sucrose density gradient |
Flotation density |
1.17-1.19 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
14 |
Experiment ID |
221 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
CD63|CD9
|
Enriched markers |
✔
HSP90B1
|
Negative markers |
✔
qNano
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25857718
|
Organism |
Homo sapiens |
Experiment description |
Proteomic analysis of exosomes from nasopharyngeal carcinoma cell identifies intercellular transfer of angiogenic proteins |
Authors |
"Chan YK, Zhang H, Liu P, Tsao GS, Li Lung M, Mak NK, Ngok-Shun Wong R, Ying-Kit Yue P" |
Journal name |
Int J Cancer
|
Publication year |
2015 |
Sample |
Nasopharyngeal carcinoma cells |
Sample name |
NP460 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Sucrose density gradient |
Flotation density |
1.17-1.19 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
15 |
Experiment ID |
231 |
MISEV standards |
✘
|
Biophysical techniques |
✔
Alix|CD63|CD9
|
Enriched markers |
✘
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25332113
|
Organism |
Homo sapiens |
Experiment description |
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets |
Authors |
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G." |
Journal name |
Transfusion
|
Publication year |
2015 |
Sample |
Platelets |
Sample name |
PL-Exs - Rep 1 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient |
Flotation density |
1.12-1.15 g/mL
|
Molecules identified in the study |
Protein Lipids |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
16 |
Experiment ID |
232 |
MISEV standards |
✘
|
Biophysical techniques |
✘
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25332113
|
Organism |
Homo sapiens |
Experiment description |
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets |
Authors |
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G." |
Journal name |
Transfusion
|
Publication year |
2015 |
Sample |
Platelets |
Sample name |
PL-Exs - Rep 2 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient |
Flotation density |
1.12-1.15 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
17 |
Experiment ID |
233 |
MISEV standards |
✘
|
Biophysical techniques |
✘
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25332113
|
Organism |
Homo sapiens |
Experiment description |
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets |
Authors |
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G." |
Journal name |
Transfusion
|
Publication year |
2015 |
Sample |
Platelets |
Sample name |
PL-Exs - Rep 3 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient |
Flotation density |
1.12-1.15 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
18 |
Experiment ID |
275 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
TSG101|Alix|RAB5A|CD9|CD82|CD63|CD81
|
Enriched markers |
✔
AIF
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25844599
|
Organism |
Homo sapiens |
Experiment description |
Molecular profiling of prostate cancer derived exosomes may reveal a predictive signature for response to docetaxel. |
Authors |
"Kharaziha P, Chioureas D, Rutishauser D, Baltatzis G, Lennartsson L, Fonseca P, Azimi A, Hultenby K, Zubarev R, Ullen A, Yachnin J, Nilsson S, Panaretakis T." |
Journal name |
Oncotarget
|
Publication year |
2015 |
Sample |
Prostate cancer cells |
Sample name |
DU145 - Docetaxel sensitive |
Isolation/purification methods |
Filtration Ultracentrifugation Sucrose density gradient |
Flotation density |
1.12-1.19 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry/Flow cytometry/Western blotting |
|
|
19 |
Experiment ID |
834 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
|
Enriched markers |
✔
CANX
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
35333565
|
Organism |
Homo sapiens |
Experiment description |
LAMP2A regulates the loading of proteins into exosomes |
Authors |
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P" |
Journal name |
Sci Adv
|
Publication year |
2022 |
Sample |
Retinal pigment epithelial cells |
Sample name |
ARPE-19 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
20 |
Experiment ID |
835 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
|
Enriched markers |
✔
CANX
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
35333565
|
Organism |
Homo sapiens |
Experiment description |
LAMP2A regulates the loading of proteins into exosomes |
Authors |
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P" |
Journal name |
Sci Adv
|
Publication year |
2022 |
Sample |
Retinal pigment epithelial cells |
Sample name |
ARPE-19 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
21 |
Experiment ID |
63 |
MISEV standards |
✘
|
Biophysical techniques |
✔
AQP2
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
19056867
|
Organism |
Homo sapiens |
Experiment description |
Large-scale proteomics and phosphoproteomics of urinary exosomes. |
Authors |
"Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA" |
Journal name |
JASN
|
Publication year |
2009 |
Sample |
Urine |
Sample name |
Urine - Normal |
Isolation/purification methods |
Differential centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry [LTQ] Western blotting |
|
|
Protein-protein interactions for EFNB1 |
|
Protein Interactor |
ExoCarta ID |
Identification method |
PubMed |
Species |
1 |
EIF4G3 |
8672 |
Affinity Capture-MS |
|
Homo sapiens |
|
2 |
INTS4 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
3 |
TUBGCP3 |
10426 |
Affinity Capture-MS |
|
Homo sapiens |
|
4 |
AXL |
558 |
Affinity Capture-MS |
|
Homo sapiens |
|
5 |
DDR1 |
780 |
Affinity Capture-MS |
|
Homo sapiens |
|
6 |
GJD3 |
|
Proximity Label-MS |
|
Homo sapiens |
|
7 |
FAM171A2 |
284069 |
Affinity Capture-MS |
|
Homo sapiens |
|
8 |
FAM73A |
|
Affinity Capture-MS |
|
Homo sapiens |
|
9 |
DEPDC1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
10 |
OCLN |
100506658 |
Proximity Label-MS |
|
Homo sapiens |
|
11 |
DNAAF5 |
54919 |
Affinity Capture-MS |
|
Homo sapiens |
|
12 |
MARCKS |
4082 |
Proximity Label-MS |
|
Homo sapiens |
|
13 |
LAMP3 |
|
Proximity Label-MS |
|
Homo sapiens |
|
14 |
SLC39A4 |
55630 |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
15 |
GJA1 |
2697 |
Proximity Label-MS |
|
Homo sapiens |
|
16 |
TNPO1 |
3842 |
Affinity Capture-MS |
|
Homo sapiens |
|
17 |
TSC2 |
7249 |
Affinity Capture-MS |
|
Homo sapiens |
|
18 |
RAB9A |
9367 |
Proximity Label-MS |
|
Homo sapiens |
|
19 |
EIF2B2 |
8892 |
Affinity Capture-MS |
|
Homo sapiens |
|
20 |
CAND2 |
23066 |
Affinity Capture-MS |
|
Homo sapiens |
|
21 |
PCDH12 |
51294 |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
22 |
NMNAT1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
23 |
SETX |
|
Affinity Capture-MS |
|
Homo sapiens |
|
24 |
LAMP2 |
3920 |
Proximity Label-MS |
|
Homo sapiens |
|
25 |
LRRC52 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
26 |
HOOK2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
27 |
STX4 |
6810 |
Proximity Label-MS |
|
Homo sapiens |
|
28 |
C1orf112 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
29 |
PLEKHG4 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
30 |
B3GAT1 |
|
Proximity Label-MS |
|
Homo sapiens |
|
31 |
HEATR3 |
55027 |
Affinity Capture-MS |
|
Homo sapiens |
|
32 |
DAB2IP |
153090 |
Affinity Capture-MS |
|
Homo sapiens |
|
33 |
MLLT4 |
4301 |
Proximity Label-MS |
|
Homo sapiens |
|
34 |
USO1 |
8615 |
Affinity Capture-MS |
|
Homo sapiens |
|
35 |
CTLA4 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
36 |
MON2 |
23041 |
Affinity Capture-MS |
|
Homo sapiens |
|
37 |
EIF2B4 |
8890 |
Affinity Capture-MS |
|
Homo sapiens |
|
38 |
TRDN |
10345 |
Affinity Capture-MS |
|
Homo sapiens |
|
39 |
ZDHHC11 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
40 |
IQGAP1 |
8826 |
Affinity Capture-MS |
|
Homo sapiens |
|
41 |
SRC |
6714 |
Biochemical Activity |
|
Homo sapiens |
|
42 |
CDH16 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
43 |
RECQL4 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
44 |
MAD2L2 |
10459 |
Affinity Capture-MS |
|
Homo sapiens |
|
45 |
IPO8 |
10526 |
Affinity Capture-MS |
|
Homo sapiens |
|
46 |
FANCD2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
47 |
FIBP |
9158 |
Affinity Capture-MS |
|
Homo sapiens |
|
48 |
ITFG3 |
83986 |
Affinity Capture-MS |
|
Homo sapiens |
|
49 |
HYPM |
|
Affinity Capture-MS |
|
Homo sapiens |
|
50 |
VCAM1 |
7412 |
Affinity Capture-MS |
|
Homo sapiens |
|
51 |
DFNA5 |
1687 |
Affinity Capture-MS |
|
Homo sapiens |
|
52 |
LYN |
4067 |
Proximity Label-MS |
|
Homo sapiens |
|
53 |
RAB35 |
11021 |
Proximity Label-MS |
|
Homo sapiens |
|
54 |
SDCBP |
6386 |
Reconstituted Complex |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
|
55 |
EXOC7 |
23265 |
Affinity Capture-MS |
|
Homo sapiens |
|
56 |
PTPRF |
5792 |
Affinity Capture-MS |
|
Homo sapiens |
|
57 |
TMEM59 |
9528 |
Affinity Capture-MS |
|
Homo sapiens |
|
58 |
EXOC5 |
10640 |
Affinity Capture-MS |
|
Homo sapiens |
|
59 |
PLEKHH3 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
60 |
KIAA1804 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
61 |
LAMTOR1 |
55004 |
Proximity Label-MS |
|
Homo sapiens |
|
62 |
AGBL5 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
63 |
LMAN1 |
3998 |
Proximity Label-MS |
|
Homo sapiens |
|
64 |
HEATR1 |
55127 |
Affinity Capture-MS |
|
Homo sapiens |
|
65 |
XPO1 |
7514 |
Affinity Capture-MS |
|
Homo sapiens |
|
66 |
ZIC2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
67 |
IPO11 |
51194 |
Affinity Capture-MS |
|
Homo sapiens |
|
68 |
NRSN1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
69 |
NOP9 |
161424 |
Affinity Capture-MS |
|
Homo sapiens |
|
70 |
NF1 |
4763 |
Affinity Capture-MS |
|
Homo sapiens |
|
71 |
TBC1D9B |
23061 |
Affinity Capture-MS |
|
Homo sapiens |
|
72 |
SH3BP4 |
23677 |
Affinity Capture-MS |
|
Homo sapiens |
|
73 |
TMEM213 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
74 |
CEACAM21 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
75 |
CXADR |
1525 |
Proximity Label-MS |
|
Homo sapiens |
|
76 |
SHMT1 |
6470 |
Affinity Capture-MS |
|
Homo sapiens |
|
77 |
KRBA1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
78 |
EIF2B5 |
8893 |
Affinity Capture-MS |
|
Homo sapiens |
|
79 |
SMIM5 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
80 |
MCAM |
4162 |
Proximity Label-MS |
|
Homo sapiens |
|
81 |
RAB4A |
5867 |
Proximity Label-MS |
|
Homo sapiens |
|
82 |
RNF213 |
57674 |
Affinity Capture-MS |
|
Homo sapiens |
|
83 |
PDXDC1 |
23042 |
Affinity Capture-MS |
|
Homo sapiens |
|
84 |
DNAJC5 |
80331 |
Proximity Label-MS |
|
Homo sapiens |
|
85 |
RGS3 |
5998 |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
86 |
ACAD10 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
87 |
TNPO2 |
30000 |
Affinity Capture-MS |
|
Homo sapiens |
|
88 |
DIRAS3 |
|
Proximity Label-MS |
|
Homo sapiens |
|
89 |
CKAP5 |
9793 |
Affinity Capture-MS |
|
Homo sapiens |
|
90 |
LIN7C |
55327 |
Affinity Capture-MS |
|
Homo sapiens |
|
91 |
TTC12 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
92 |
EXOC6 |
54536 |
Affinity Capture-MS |
|
Homo sapiens |
|
93 |
IQCB1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
94 |
BRICD5 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
95 |
YWHAQ |
10971 |
Two-hybrid |
|
Homo sapiens |
|
96 |
EXOC6B |
23233 |
Affinity Capture-MS |
|
Homo sapiens |
|
97 |
MTMR1 |
8776 |
Affinity Capture-MS |
|
Homo sapiens |
|
98 |
DNM2 |
1785 |
Affinity Capture-MS |
|
Homo sapiens |
|
99 |
MPP7 |
143098 |
Affinity Capture-MS |
|
Homo sapiens |
|
100 |
RANBP6 |
26953 |
Affinity Capture-MS |
|
Homo sapiens |
|
101 |
CCNY |
219771 |
Affinity Capture-MS |
|
Homo sapiens |
|
102 |
TIMELESS |
|
Affinity Capture-MS |
|
Homo sapiens |
|
103 |
EPHB2 |
2048 |
Affinity Capture-MS |
|
Homo sapiens |
|
104 |
STAG2 |
10735 |
Affinity Capture-MS |
|
Homo sapiens |
|
105 |
USP32 |
84669 |
Affinity Capture-MS |
|
Homo sapiens |
|
106 |
PHLPP1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
107 |
TTI1 |
9675 |
Affinity Capture-MS |
|
Homo sapiens |
|
108 |
MINK1 |
50488 |
Affinity Capture-MS |
|
Homo sapiens |
|
109 |
PICK1 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
110 |
TIGD5 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
111 |
FAM160B1 |
57700 |
Affinity Capture-MS |
|
Homo sapiens |
|
112 |
ACVR2A |
|
Affinity Capture-MS |
|
Homo sapiens |
|
113 |
CXCR4 |
7852 |
Affinity Capture-MS |
|
Homo sapiens |
|
114 |
TTYH1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
115 |
TFAP4 |
7023 |
Affinity Capture-MS |
|
Homo sapiens |
|
116 |
SLC12A2 |
6558 |
Affinity Capture-MS |
|
Homo sapiens |
|
117 |
SMEK2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
118 |
RAB5A |
5868 |
Proximity Label-MS |
|
Homo sapiens |
|
119 |
PANX1 |
24145 |
Proximity Label-MS |
|
Homo sapiens |
|
120 |
TNFSF8 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
121 |
NCAPH2 |
|
Affinity Capture-MS |
|
Homo sapiens |
| | | |