Gene description for RRP1
Gene name ribosomal RNA processing 1
Gene symbol RRP1
Other names/aliases D21S2056E
NNP-1
NOP52
RRP1A
Species Homo sapiens
 Database cross references - RRP1
ExoCarta ExoCarta_8568
Vesiclepedia VP_8568
Entrez Gene 8568
HGNC 18785
MIM 610653
UniProt P56182  
 RRP1 identified in exosomes derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
 Gene ontology annotations for RRP1
Molecular Function
    RNA binding GO:0003723 HDA
    protein binding GO:0005515 IPI
Biological Process
    rRNA processing GO:0006364 IEA
Subcellular Localization
    nucleus GO:0005634 IBA
    chromosome GO:0005694 IDA
    nucleolus GO:0005730 HDA
    nucleolus GO:0005730 IDA
    preribosome, small subunit precursor GO:0030688 IEA
 Experiment description of studies that identified RRP1 in exosomes
1
Experiment ID 236
MISEV standards
EM
Biophysical techniques
TSG101|Alix|HSC70|GAPDH
Enriched markers
HSP90B1
Negative markers
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name MHCC97L
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
 Protein-protein interactions for RRP1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 UBE2H 7328
Affinity Capture-MS Homo sapiens
2 SRP19 6728
Affinity Capture-MS Homo sapiens
3 RIT1 6016
Negative Genetic Homo sapiens
4 KPNA3 3839
Affinity Capture-MS Homo sapiens
5 CLEC3A  
Affinity Capture-MS Homo sapiens
6 CDH5  
Affinity Capture-MS Homo sapiens
7 ANAPC15  
Affinity Capture-MS Homo sapiens
8 TMEM206 55248
Affinity Capture-MS Homo sapiens
9 NGRN  
Proximity Label-MS Homo sapiens
10 CHCHD1  
Proximity Label-MS Homo sapiens
11 RPL14 9045
Affinity Capture-MS Homo sapiens
12 PNMAL1  
Affinity Capture-MS Homo sapiens
13 LMNA 4000
Proximity Label-MS Homo sapiens
14 DNAJC15  
Affinity Capture-MS Homo sapiens
15 PNKD  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
16 ANKRD50 57182
Affinity Capture-MS Homo sapiens
17 USP36  
Affinity Capture-MS Homo sapiens
18 UBE2O 63893
Affinity Capture-MS Homo sapiens
19 CHCHD2  
Affinity Capture-MS Homo sapiens
20 FBXW7  
Affinity Capture-MS Homo sapiens
21 NPM1 4869
Affinity Capture-MS Homo sapiens
22 DDRGK1 65992
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
23 OBSL1 23363
Affinity Capture-MS Homo sapiens
24 DDOST 1650
Affinity Capture-MS Homo sapiens
25 EPHA1 2041
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
26 ITFG3 83986
Affinity Capture-MS Homo sapiens
27 TNFRSF13B  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
28 ATG16L1 55054
Affinity Capture-MS Homo sapiens
29 MECP2 4204
Affinity Capture-MS Homo sapiens
30 CA14 23632
Affinity Capture-MS Homo sapiens
31 MAK16  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
32 VTN 7448
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
33 CHMP4C 92421
Affinity Capture-MS Homo sapiens
34 VSIG1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
35 NEUROG3  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
36 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
37 C19orf38  
Affinity Capture-MS Homo sapiens
38 DRG1 4733
Affinity Capture-MS Homo sapiens
39 RBM4B  
Affinity Capture-MS Homo sapiens
40 IFI27L1  
Affinity Capture-MS Homo sapiens
41 BARD1 580
Affinity Capture-MS Homo sapiens
42 OGT 8473
Reconstituted Complex Homo sapiens
43 RPL31 6160
Proximity Label-MS Homo sapiens
44 IFI16 3428
Affinity Capture-MS Homo sapiens
45 RAD18  
Affinity Capture-MS Homo sapiens
46 TNFSF12-TNFSF13  
Affinity Capture-MS Homo sapiens
47 MOGS 7841
Affinity Capture-MS Homo sapiens
48 RPN1 6184
Affinity Capture-MS Homo sapiens
49 HECTD1 25831
Affinity Capture-MS Homo sapiens
50 SPANXN2  
Two-hybrid Homo sapiens
51 SCARNA22  
Affinity Capture-RNA Homo sapiens
52 TPX2  
Affinity Capture-MS Homo sapiens
53 RPN2 6185
Affinity Capture-MS Homo sapiens
54 BTNL9  
Affinity Capture-MS Homo sapiens
55 LMNB1 4001
Affinity Capture-MS Homo sapiens
56 SIRT7  
Affinity Capture-MS Homo sapiens
57 CHST8 64377
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
58 NPTN 27020
Affinity Capture-MS Homo sapiens
59 RPS8 6202
Affinity Capture-MS Homo sapiens
60 RPL3 6122
Affinity Capture-MS Homo sapiens
61 EGFR 1956
Negative Genetic Homo sapiens
62 FNTA 2339
Affinity Capture-MS Homo sapiens
63 KIAA1467 57613
Affinity Capture-MS Homo sapiens
64 MYCN  
Affinity Capture-MS Homo sapiens
65 PCBP1 5093
Affinity Capture-MS Homo sapiens
66 MYC  
Affinity Capture-MS Homo sapiens
67 RPA3 6119
Proximity Label-MS Homo sapiens
68 SCN2B  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
69 RPL18 6141
Affinity Capture-MS Homo sapiens
70 PVRL4  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
71 RNF2  
Affinity Capture-MS Homo sapiens
72 TMSB4Y  
Affinity Capture-MS Homo sapiens
73 MDM2  
Biochemical Activity Homo sapiens
74 SOX2  
Affinity Capture-MS Homo sapiens
75 OST4  
Affinity Capture-MS Homo sapiens
76 GYPA  
Affinity Capture-MS Homo sapiens
77 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
78 DNAJC19 131118
Affinity Capture-MS Homo sapiens
79 FBXL6  
Affinity Capture-MS Homo sapiens
80 ICT1 3396
Proximity Label-MS Homo sapiens
81 MNDA 4332
Affinity Capture-MS Homo sapiens
82 DGCR8  
Affinity Capture-MS Homo sapiens
83 CHST5  
Affinity Capture-MS Homo sapiens
84 SMURF1 57154
Affinity Capture-MS Homo sapiens
85 EFNB1 1947
Affinity Capture-MS Homo sapiens
86 MINA 84864
Affinity Capture-MS Homo sapiens
87 TNFSF12 8742
Affinity Capture-MS Homo sapiens
88 EZH1  
Affinity Capture-MS Homo sapiens
89 NIFK 84365
Affinity Capture-MS Homo sapiens
90 C20orf197  
Affinity Capture-MS Homo sapiens
91 E2F4  
Affinity Capture-MS Homo sapiens
92 NCL 4691
Affinity Capture-MS Homo sapiens
93 TRIM31  
Affinity Capture-MS Homo sapiens
94 RPS6 6194
Proximity Label-MS Homo sapiens
95 GAGE5  
Affinity Capture-MS Homo sapiens
96 GRSF1 2926
Proximity Label-MS Homo sapiens
97 C1QBP 708
Proximity Label-MS Homo sapiens
98 KRAS 3845
Negative Genetic Homo sapiens
99 GNB2L1 10399
Affinity Capture-MS Homo sapiens
100 METTL17  
Proximity Label-MS Homo sapiens
101 CLMP 79827
Affinity Capture-MS Homo sapiens
View the network image/svg+xml



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