Gene ontology annotations for UBE4A
Experiment description of studies that identified UBE4A in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Homo sapiens
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Mesenchymal stem cells
Sample name
UCMSC
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
6
Experiment ID
211
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
cytochrome c|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
IGROV1
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
7
Experiment ID
212
MISEV standards
✔
CEM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
Cytochrome C|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
OVCAR-3
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
8
Experiment ID
217
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|CD81|CD9|CD63
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23844026
Organism
Homo sapiens
Experiment description
Characterization of human thymic exosomes.
Authors
"Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name
PLoS One
Publication year
2013
Sample
Thymus
Sample name
Normal-Thymus
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for UBE4A
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
SV2C
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
2
GYPA
Affinity Capture-MS
Homo sapiens
3
TTYH1
Affinity Capture-MS
Homo sapiens
4
MAVS
57506
Affinity Capture-MS
Homo sapiens
Reconstituted Complex
Homo sapiens
5
KCNMB3
Affinity Capture-MS
Homo sapiens
6
FASN
2194
Positive Genetic
Homo sapiens
7
GYPB
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
8
VAPB
9217
Affinity Capture-MS
Homo sapiens
9
GPR17
2840
Affinity Capture-MS
Homo sapiens
10
SIGLECL1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
11
SLA
Affinity Capture-Western
Homo sapiens
Reconstituted Complex
Homo sapiens
Affinity Capture-Western
Homo sapiens
12
KIR2DL1
Affinity Capture-MS
Homo sapiens
13
C3orf52
Affinity Capture-MS
Homo sapiens
14
ZDHHC12
Affinity Capture-MS
Homo sapiens
15
LRRC25
Affinity Capture-MS
Homo sapiens
16
FOXB1
Affinity Capture-MS
Homo sapiens
17
TMEM134
Affinity Capture-MS
Homo sapiens
18
VSIG1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
19
CD70
970
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
20
IL9R
Affinity Capture-MS
Homo sapiens
21
CHRNA1
Affinity Capture-MS
Homo sapiens
22
FAM3C
10447
Affinity Capture-MS
Homo sapiens
Affinity Capture-Western
Homo sapiens
23
EDEM1
Affinity Capture-MS
Homo sapiens
24
PRDM1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
25
SPSB4
Affinity Capture-MS
Homo sapiens
26
C9orf78
51759
Affinity Capture-MS
Homo sapiens
27
EFNB1
1947
Affinity Capture-MS
Homo sapiens
28
C19orf38
Affinity Capture-MS
Homo sapiens
29
TP53
7157
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
30
ELAVL1
1994
Affinity Capture-RNA
Homo sapiens
31
FOXI2
Affinity Capture-MS
Homo sapiens
32
UBE2D4
Two-hybrid
Homo sapiens
33
FOXL1
Affinity Capture-MS
Homo sapiens
34
C1orf210
Affinity Capture-MS
Homo sapiens
35
ITFG3
83986
Affinity Capture-MS
Homo sapiens
36
LOC100132735
Protein-RNA
Homo sapiens
37
GZMB
Biochemical Activity
Homo sapiens
38
PRKCSH
5589
Co-fractionation
Homo sapiens
39
UBE2D2
7322
Two-hybrid
Homo sapiens
40
FGFR2
2263
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
41
PTP4A3
Affinity Capture-MS
Homo sapiens
42
PTTG1
Biochemical Activity
Homo sapiens
43
B4GALT3
8703
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
44
SEC61B
10952
Proximity Label-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
45
FOXL2
Affinity Capture-MS
Homo sapiens
46
PTPN1
5770
Proximity Label-MS
Homo sapiens
47
MDM2
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
48
NTRK1
4914
Affinity Capture-MS
Homo sapiens
49
CASP6
839
Biochemical Activity
Homo sapiens
50
LRRTM1
347730
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
51
PRAMEF9
Affinity Capture-MS
Homo sapiens
52
EPHA2
1969
Biochemical Activity
Homo sapiens
53
IP6K1
9807
Two-hybrid
Homo sapiens
Affinity Capture-MS
Homo sapiens
54
DNAJC1
64215
Proximity Label-MS
Homo sapiens
55
C6orf62
81688
Affinity Capture-MS
Homo sapiens
56
KCNA2
Affinity Capture-MS
Homo sapiens
57
FOXQ1
Affinity Capture-MS
Homo sapiens
58
ATP1B3
483
Affinity Capture-MS
Homo sapiens
59
C3orf18
Affinity Capture-MS
Homo sapiens
60
CUL5
8065
Affinity Capture-MS
Homo sapiens
61
VIMP
55829
Affinity Capture-MS
Homo sapiens
62
SEMA4C
54910
Affinity Capture-MS
Homo sapiens
63
WDHD1
Co-fractionation
Homo sapiens
64
PARP16
54956
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
65
UBXN4
23190
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
66
UBE2D3
7323
Two-hybrid
Homo sapiens
Reconstituted Complex
Homo sapiens
67
UBE2D1
7321
Two-hybrid
Homo sapiens
68
VCP
7415
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which UBE4A is involved