Gene description for CDKN1B
Gene name cyclin-dependent kinase inhibitor 1B (p27, Kip1)
Gene symbol CDKN1B
Other names/aliases CDKN4
KIP1
MEN1B
MEN4
P27KIP1
Species Homo sapiens
 Database cross references - CDKN1B
ExoCarta ExoCarta_1027
Entrez Gene 1027
HGNC 1785
MIM 600778
UniProt P46527  
 CDKN1B identified in exosomes derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
Hepatocellular carcinoma cells 26054723    
Hepatocytes 26054723    
 Gene ontology annotations for CDKN1B
Molecular Function
    protein complex binding GO:0032403 IEA
    protein binding GO:0005515 IPI
    protein phosphatase binding GO:0019903 IPI
    transforming growth factor beta receptor, cytoplasmic mediator activity GO:0005072 TAS
    Hsp70 protein binding GO:0030544 IEA
    cysteine-type endopeptidase activator activity involved in apoptotic process GO:0008656 IDA
    chaperone binding GO:0051087 IEA
    cyclin-dependent protein serine/threonine kinase inhibitor activity GO:0004861 IEA
Biological Process
    negative regulation of kinase activity GO:0033673 IDA
    positive regulation of microtubule polymerization GO:0031116 IEA
    negative regulation of cell proliferation GO:0008285 IMP
    negative regulation of apoptotic process GO:0043066 IEA
    response to peptide hormone GO:0043434 IEA
    inner ear development GO:0048839 IEA
    response to amino acid GO:0043200 IEA
    DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest GO:0006977 TAS
    fibroblast growth factor receptor signaling pathway GO:0008543 TAS
    autophagic cell death GO:0048102 IDA
    phosphatidylinositol-mediated signaling GO:0048015 TAS
    negative regulation of phosphorylation GO:0042326 IDA
    cellular response to organic cyclic compound GO:0071407 IEA
    small GTPase mediated signal transduction GO:0007264 TAS
    response to estradiol GO:0032355 IEA
    response to cadmium ion GO:0046686 IEA
    innate immune response GO:0045087 TAS
    negative regulation of cellular component movement GO:0051271 IEA
    activation of cysteine-type endopeptidase activity involved in apoptotic process GO:0006919 IDA
    positive regulation of cell death GO:0010942 IDA
    negative regulation of cyclin-dependent protein serine/threonine kinase activity GO:0045736 IEA
    response to hypoxia GO:0001666 IEA
    cellular response to lithium ion GO:0071285 IDA
    mitotic cell cycle GO:0000278 TAS
    Fc-epsilon receptor signaling pathway GO:0038095 TAS
    epidermal growth factor receptor signaling pathway GO:0007173 TAS
    negative regulation of transcription, DNA-templated GO:0045892 IDA
    neurotrophin TRK receptor signaling pathway GO:0048011 TAS
    G1/S transition of mitotic cell cycle GO:0000082 TAS
    sensory perception of sound GO:0007605 IEA
    cellular response to antibiotic GO:0071236 IEA
    positive regulation of protein catabolic process GO:0045732 IDA
    regulation of cyclin-dependent protein serine/threonine kinase activity GO:0000079 TAS
    negative regulation of epithelial cell proliferation involved in prostate gland development GO:0060770 IEA
    response to drug GO:0042493 IEA
    negative regulation of cell growth GO:0030308 IDA
    cell cycle arrest GO:0007050 IMP
    response to glucose GO:0009749 IEA
    mitotic cell cycle arrest GO:0071850 IDA
    negative regulation of mitotic cell cycle GO:0045930 IDA
    potassium ion transport GO:0006813 IEA
    positive regulation of cell proliferation GO:0008284 IEA
Subcellular Localization
    nucleoplasm GO:0005654 TAS
    cytoplasm GO:0005737 IDA
    Cul4A-RING E3 ubiquitin ligase complex GO:0031464 IDA
    endosome GO:0005768 IEA
    cytosol GO:0005829 TAS
    nucleus GO:0005634 IDA
 Experiment description of studies that identified CDKN1B in exosomes
1
Experiment ID 235
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix|HSC70|GAPDH
EV Cytosolic markers
EV Membrane markers
HSP90B1
EV Negative markers
qNano
EV Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
2
Experiment ID 236
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix|HSC70|GAPDH
EV Cytosolic markers
EV Membrane markers
HSP90B1
EV Negative markers
qNano
EV Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name MHCC97L
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
3
Experiment ID 237
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix|HSC70|GAPDH
EV Cytosolic markers
EV Membrane markers
HSP90B1
EV Negative markers
qNano
EV Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocytes
Sample name MIHA
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RNA Sequencing
 Protein-protein interactions for CDKN1B
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 CCND2  
Two-hybrid Homo sapiens
2 GRB2 2885
Invivo Homo sapiens
Invitro Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
3 TSC2 7249
Affinity Capture-Western Homo sapiens
4 XPO1 7514
Invivo Homo sapiens
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
5 YWHAE 7531
Affinity Capture-MS Homo sapiens
6 TSC1  
Affinity Capture-Western Homo sapiens
7 UCHL1 7345
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
8 CCNE2  
Invivo Homo sapiens
9 SKP2  
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
10 CCNE1  
Affinity Capture-Western Homo sapiens
11 TRAF2  
Two-hybrid Homo sapiens
12 CDKN1A  
Affinity Capture-MS Homo sapiens
Invivo Homo sapiens
13 CDK6 1021
Affinity Capture-Western Homo sapiens
14 CKS1B  
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
15 SPDY1  
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
16 ARHGDIA 396
Two-hybrid Homo sapiens
17 CDK2 1017
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
18 NUP50 10762
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
19 CCNA2 890
Invitro Homo sapiens
Affinity Capture-Western Homo sapiens
20 CDK4 1019
Affinity Capture-MS Homo sapiens
Invitro Homo sapiens
Reconstituted Complex Homo sapiens
21 COPS5 10987
Affinity Capture-Western Homo sapiens
22 YWHAQ 10971
Affinity Capture-Western Homo sapiens
23 CCNA1  
Invivo Homo sapiens
Invivo Homo sapiens
Affinity Capture-MS Homo sapiens
24 AKT1 207
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
25 CCND1 595
Invitro Homo sapiens
Invitro Homo sapiens
Reconstituted Complex Homo sapiens
26 CCND3  
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
View the network image/svg+xml



Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here