Gene ontology annotations for KPNA6
Experiment description of studies that identified KPNA6 in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
497
MISEV standards
✘
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35931686
Organism
Homo sapiens
Experiment description
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name
Cell Death Dis
Publication year
2022
Sample
Chondrocytes
Sample name
T/C-28a2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
6
Experiment ID
498
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35931686
Organism
Homo sapiens
Experiment description
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name
Cell Death Dis
Publication year
2022
Sample
Chondrocytes
Sample name
T/C-28a2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
7
Experiment ID
1203
MISEV standards
✔
EM
Biophysical techniques
✔
SDCBP|FLOT1|CD9|CD81|CD63|EPCAM|GAPDH|LAMP1|TFRC|CD151|CD82|LAMP2|RAB35|TSG101|FLOT2|RAB5B|ICAM1|RAB5A
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
34887515
Organism
Homo sapiens
Experiment description
Supermeres are functional extracellular nanoparticles replete with disease biomarkers and therapeutic targets
Authors
"Zhang Q, Jeppesen DK, Higginbotham JN, Graves-Deal R, Trinh VQ, Ramirez MA, Sohn Y, Neininger AC, Taneja N, McKinley ET, Niitsu H, Cao Z, Evans R, Glass SE, Ray KC, Fissell WH, Hill S, Rose KL, Huh WJ, Washington MK, Ayers GD, Burnette DT, Sharma S, Rome LH, Franklin JL, Lee YA, Liu Q, Coffey RJ."
Journal name
Nat Cell Biol
Publication year
2021
Sample
Colorectal cancer cells
Sample name
DiFi
Isolation/purification methods
Differential centrifugation Filtration Centrifugal ultrafiltration Ultracentrifugation OptiPrep density gradient centrifugation
Flotation density
-
Molecules identified in the study
Protein miRNA
Methods used in the study
Western blotting Mass spectrometry RNA sequencing
8
Experiment ID
363
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
9
Experiment ID
364
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
10
Experiment ID
365
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
11
Experiment ID
488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Homo sapiens
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Mesenchymal stem cells
Sample name
UCMSC
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
12
Experiment ID
217
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|CD81|CD9|CD63
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23844026
Organism
Homo sapiens
Experiment description
Characterization of human thymic exosomes.
Authors
"Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name
PLoS One
Publication year
2013
Sample
Thymus
Sample name
Normal-Thymus
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for KPNA6
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
RIT1
6016
Negative Genetic
Homo sapiens
2
NCBP1
4686
Affinity Capture-MS
Homo sapiens
3
KPNA3
3839
Co-fractionation
Homo sapiens
Co-fractionation
Homo sapiens
4
NOP58
51602
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
5
UBE2O
63893
Affinity Capture-MS
Homo sapiens
6
CDKN1B
1027
Reconstituted Complex
Homo sapiens
7
ANP32A
8125
Two-hybrid
Homo sapiens
Affinity Capture-MS
Homo sapiens
8
KPNA1
3836
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
9
TNPO1
3842
Co-fractionation
Homo sapiens
10
KPNB1
3837
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Reconstituted Complex
Homo sapiens
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
11
ACTC1
70
Proximity Label-MS
Homo sapiens
12
NOP56
10528
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
13
MORF4L2
Co-fractionation
Homo sapiens
14
TRIM33
51592
Affinity Capture-MS
Homo sapiens
15
RNMT
8731
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
16
XRN2
22803
Affinity Capture-MS
Homo sapiens
17
KPNA2
3838
Co-fractionation
Homo sapiens
Co-fractionation
Homo sapiens
18
Oxnad1
Affinity Capture-MS
Mus musculus
19
HDAC1
3065
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
20
SURF2
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
21
CENPU
Affinity Capture-MS
Homo sapiens
22
PARK2
Affinity Capture-MS
Homo sapiens
23
TAF9
6880
Two-hybrid
Homo sapiens
24
GFPT1
2673
Co-fractionation
Homo sapiens
25
MCM2
4171
Affinity Capture-MS
Homo sapiens
26
C18orf25
147339
Affinity Capture-MS
Homo sapiens
27
NUP153
9972
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
28
CDK2AP1
Affinity Capture-MS
Homo sapiens
29
ANP32B
10541
Affinity Capture-MS
Homo sapiens
30
HDAC2
3066
Affinity Capture-MS
Homo sapiens
31
MTHFR
4524
Affinity Capture-MS
Homo sapiens
32
FBL
2091
Co-fractionation
Homo sapiens
33
POLR1E
Affinity Capture-MS
Homo sapiens
34
PSMC2
5701
Co-fractionation
Homo sapiens
35
EXOSC4
54512
Co-fractionation
Homo sapiens
36
Nhp2l1
20826
Affinity Capture-MS
Mus musculus
37
FAS
355
Proximity Label-MS
Homo sapiens
38
UNK
Affinity Capture-RNA
Homo sapiens
39
PPM1D
Affinity Capture-MS
Homo sapiens
40
TADA2B
Affinity Capture-MS
Homo sapiens
41
MEPCE
56257
Affinity Capture-MS
Homo sapiens
42
MAP1B
4131
Co-fractionation
Homo sapiens
43
NONO
4841
Affinity Capture-MS
Homo sapiens
44
NOP2
4839
Two-hybrid
Homo sapiens
45
SNRNP200
23020
Co-fractionation
Homo sapiens
46
Ctnnbl1
Affinity Capture-MS
Mus musculus
47
CHMP4B
128866
Affinity Capture-MS
Homo sapiens
48
SP110
Affinity Capture-MS
Homo sapiens
49
RAN
5901
Co-fractionation
Homo sapiens
50
Ddx21
56200
Affinity Capture-MS
Mus musculus
51
NTRK1
4914
Affinity Capture-MS
Homo sapiens
52
Mki67
17345
Affinity Capture-MS
Mus musculus
53
ZNF131
Reconstituted Complex
Homo sapiens
54
FAM103A1
Affinity Capture-MS
Homo sapiens
55
LYAR
55646
Affinity Capture-MS
Homo sapiens
56
COPS3
8533
Co-fractionation
Homo sapiens
57
GSG2
Affinity Capture-MS
Homo sapiens
58
RANBP6
26953
Co-fractionation
Homo sapiens
59
PPM1G
5496
Affinity Capture-MS
Homo sapiens
60
BZW1
9689
Co-fractionation
Homo sapiens
61
RPL11
6135
Co-fractionation
Homo sapiens
62
OGT
8473
Reconstituted Complex
Homo sapiens
63
IPO5
3843
Co-fractionation
Homo sapiens
64
NR4A1
Affinity Capture-MS
Homo sapiens
65
CUL3
8452
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
66
MUS81
Synthetic Growth Defect
Homo sapiens
67
LMNB1
4001
Affinity Capture-MS
Homo sapiens
68
NCBP2
22916
Affinity Capture-MS
Homo sapiens
69
CD2BP2
10421
Affinity Capture-MS
Homo sapiens
70
PRKAR2A
5576
Co-fractionation
Homo sapiens
71
SKP2
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
Protein-peptide
Homo sapiens
72
METTL16
79066
Affinity Capture-MS
Homo sapiens
73
VARS
7407
Co-fractionation
Homo sapiens
74
MORF4L1
Co-fractionation
Homo sapiens
75
NAF1
Affinity Capture-MS
Homo sapiens
76
NT5C2
22978
Co-fractionation
Homo sapiens
77
FRG1B
Two-hybrid
Homo sapiens
78
Mast3
Affinity Capture-MS
Mus musculus
79
PSPC1
55269
Affinity Capture-MS
Homo sapiens
80
RPA3
6119
Proximity Label-MS
Homo sapiens
81
TTC1
7265
Co-fractionation
Homo sapiens
82
CHD8
57680
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
83
ANP32E
81611
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
84
LMNA
4000
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Proximity Label-MS
Homo sapiens
85
MDM2
Reconstituted Complex
Homo sapiens
Affinity Capture-Western
Homo sapiens
86
Nipbl
Affinity Capture-MS
Mus musculus
87
IL1A
Two-hybrid
Homo sapiens
88
COPS2
9318
Co-fractionation
Homo sapiens
89
HIF1A
3091
Reconstituted Complex
Homo sapiens
90
PLEKHA4
57664
Affinity Capture-MS
Homo sapiens
91
PHB2
11331
Affinity Capture-Western
Homo sapiens
92
SPOP
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
93
SIRT6
Affinity Capture-MS
Homo sapiens
94
CENPA
Proximity Label-MS
Homo sapiens
95
ILF3
3609
Affinity Capture-MS
Homo sapiens
96
HMGB1
3146
Co-fractionation
Homo sapiens
97
KEAP1
9817
Reconstituted Complex
Homo sapiens
Affinity Capture-Western
Homo sapiens
Affinity Capture-Western
Homo sapiens
Reconstituted Complex
Homo sapiens
98
IKBKG
8517
Affinity Capture-Western
Homo sapiens
99
Chmp2a
68953
Affinity Capture-MS
Mus musculus
100
PTTG1
Synthetic Growth Defect
Homo sapiens
101
ELAVL1
1994
Affinity Capture-RNA
Homo sapiens
102
PTPN2
5771
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
103
CREBBP
Biochemical Activity
Homo sapiens
104
CHD4
1108
Affinity Capture-MS
Homo sapiens
105
KLHL7
Affinity Capture-MS
Homo sapiens
106
SIRT1
Affinity Capture-MS
Homo sapiens
107
CACUL1
Affinity Capture-MS
Homo sapiens
108
NUP50
10762
Two-hybrid
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
109
SREK1IP1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
110
C16orf72
29035
Affinity Capture-MS
Homo sapiens
111
RELB
Affinity Capture-MS
Homo sapiens
112
MEAF6
Affinity Capture-MS
Homo sapiens
113
Ufl1
Affinity Capture-MS
Mus musculus
114
C9orf72
Affinity Capture-MS
Homo sapiens
115
KBTBD4
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
116
RAC1
5879
Two-hybrid
Homo sapiens
117
MEN1
4221
Affinity Capture-MS
Homo sapiens
118
FOXE1
Affinity Capture-MS
Homo sapiens
119
PRMT1
3276
Co-fractionation
Homo sapiens
120
ALKBH5
54890
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which KPNA6 is involved