Gene description for ATG13
Gene name autophagy related 13
Gene symbol ATG13
Other names/aliases KIAA0652
PARATARG8
Species Homo sapiens
 Database cross references - ATG13
ExoCarta ExoCarta_9776
Vesiclepedia VP_9776
Entrez Gene 9776
HGNC 29091
MIM 615088
UniProt O75143  
 ATG13 identified in exosomes derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
Hepatocytes 26054723    
 Gene ontology annotations for ATG13
Molecular Function
    protein binding GO:0005515 IPI
    protein kinase regulator activity GO:0019887 IBA
    protein kinase binding GO:0019901 IDA
    protein kinase binding GO:0019901 IPI
    protein serine/threonine kinase activator activity GO:0043539 IDA
Biological Process
    autophagosome assembly GO:0000045 IDA
    autophagosome assembly GO:0000045 IMP
    autophagosome assembly GO:0000045 IMP
    mitophagy GO:0000423 IBA
    negative regulation of cell population proliferation GO:0008285 IDA
    positive regulation of autophagy GO:0010508 IDA
    positive regulation of autophagy GO:0010508 ISO
    protein localization to phagophore assembly site GO:0034497 IBA
    piecemeal microautophagy of the nucleus GO:0034727 IBA
    response to mitochondrial depolarisation GO:0098780 IEA
    regulation of protein lipidation GO:1903059 IDA
    positive regulation of protein targeting to mitochondrion GO:1903955 HMP
Subcellular Localization
    phagophore assembly site GO:0000407 IBA
    phagophore assembly site GO:0000407 IDA
    phagophore assembly site GO:0000407 ISS
    cytoplasm GO:0005737 IC
    mitochondrion GO:0005739 IDA
    autophagosome GO:0005776 IBA
    endoplasmic reticulum membrane GO:0005789 TAS
    cytosol GO:0005829 IBA
    cytosol GO:0005829 TAS
    phagophore assembly site membrane GO:0034045 IDA
    Atg1/ULK1 kinase complex GO:1990316 IBA
    Atg1/ULK1 kinase complex GO:1990316 IPI
 Experiment description of studies that identified ATG13 in exosomes
1
Experiment ID 235
MISEV standards
EM
Biophysical techniques
TSG101|Alix|HSC70|GAPDH
Enriched markers
HSP90B1
Negative markers
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
2
Experiment ID 237
MISEV standards
EM
Biophysical techniques
TSG101|Alix|HSC70|GAPDH
Enriched markers
HSP90B1
Negative markers
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocytes
Sample name MIHA
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RNA Sequencing
 Protein-protein interactions for ATG13
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 RPSA 3921
Affinity Capture-MS Homo sapiens
2 GABARAPL1 23710
Affinity Capture-Western Homo sapiens
3 RPS12 6206
Affinity Capture-MS Homo sapiens
4 DENR 8562
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
5 MAP1LC3C  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Co-crystal Structure Homo sapiens
6 PRPS1L1 221823
Affinity Capture-MS Homo sapiens
7 GABARAPL2 11345
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Protein-peptide Homo sapiens
8 EIF3A 8661
Affinity Capture-MS Homo sapiens
9 SNRPE 6635
Affinity Capture-MS Homo sapiens
10 SMNDC1  
Affinity Capture-MS Homo sapiens
11 RPS3A 6189
Affinity Capture-MS Homo sapiens
12 ATG5 9474
Affinity Capture-Western Homo sapiens
13 EIF3C 8663
Affinity Capture-MS Homo sapiens
14 ATG9A 79065
Proximity Label-MS Homo sapiens
Affinity Capture-Western Homo sapiens
15 RPL30 6156
Affinity Capture-MS Homo sapiens
16 NACA 4666
Affinity Capture-MS Homo sapiens
17 RPL37A 6168
Affinity Capture-MS Homo sapiens
18 DDX17 10521
Affinity Capture-MS Homo sapiens
19 RPS19 6223
Affinity Capture-MS Homo sapiens
20 RPL10 6134
Affinity Capture-MS Homo sapiens
21 RPL15 6138
Affinity Capture-MS Homo sapiens
22 HNRNPC 3183
Affinity Capture-MS Homo sapiens
23 UBC 7316
Affinity Capture-MS Homo sapiens
24 KARS 3735
Affinity Capture-MS Homo sapiens
25 CCDC124 115098
Affinity Capture-MS Homo sapiens
26 APP 351
Reconstituted Complex Homo sapiens
27 YTHDF2 51441
Affinity Capture-MS Homo sapiens
28 ILF2 3608
Affinity Capture-MS Homo sapiens
29 HIST2H2AA3 8337
Affinity Capture-MS Homo sapiens
30 RPS18 6222
Affinity Capture-MS Homo sapiens
31 TOP2A 7153
Affinity Capture-MS Homo sapiens
32 RPS20 6224
Affinity Capture-MS Homo sapiens
33 MATR3 9782
Affinity Capture-MS Homo sapiens
34 MAP1LC3B 81631
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Co-crystal Structure Homo sapiens
35 ZNF638 27332
Affinity Capture-MS Homo sapiens
36 HDLBP 3069
Affinity Capture-MS Homo sapiens
37 EIF3B 8662
Affinity Capture-MS Homo sapiens
38 RPL24 6152
Affinity Capture-MS Homo sapiens
39 NCOA5  
Affinity Capture-MS Homo sapiens
40 NPM1 4869
Affinity Capture-MS Homo sapiens
41 CCDC53 51019
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
42 MAPK14 1432
Affinity Capture-Western Homo sapiens
43 RPS9 6203
Affinity Capture-MS Homo sapiens
44 RPL29 6159
Affinity Capture-MS Homo sapiens
45 YWHAH 7533
Affinity Capture-MS Homo sapiens
46 ATG16L1 55054
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
47 DDX6 1656
Affinity Capture-MS Homo sapiens
48 YWHAG 7532
Affinity Capture-MS Homo sapiens
49 RPL4 6124
Affinity Capture-MS Homo sapiens
50 PABPC4 8761
Affinity Capture-MS Homo sapiens
51 RPL19 6143
Affinity Capture-MS Homo sapiens
52 RBM8A 9939
Affinity Capture-MS Homo sapiens
53 FAS 355
Proximity Label-MS Homo sapiens
54 YWHAB 7529
Affinity Capture-MS Homo sapiens
55 RBMX 27316
Affinity Capture-MS Homo sapiens
56 RPS23 6228
Affinity Capture-MS Homo sapiens
57 RPL27 6155
Affinity Capture-MS Homo sapiens
58 EIF3K 27335
Affinity Capture-MS Homo sapiens
59 HNRNPA0 10949
Affinity Capture-MS Homo sapiens
60 RPL9 6133
Affinity Capture-MS Homo sapiens
61 RB1CC1 9821
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
62 RPS28 6234
Affinity Capture-MS Homo sapiens
63 STAU1 6780
Affinity Capture-MS Homo sapiens
64 TAB3 257397
Affinity Capture-Western Homo sapiens
65 MARS 4141
Affinity Capture-MS Homo sapiens
66 STMN1 3925
Affinity Capture-MS Homo sapiens
67 ULK2  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
68 RPL5 6125
Affinity Capture-MS Homo sapiens
69 RPL18A 6142
Affinity Capture-MS Homo sapiens
70 PABPC1 26986
Affinity Capture-MS Homo sapiens
71 SAFB2 9667
Affinity Capture-MS Homo sapiens
72 GABARAP 11337
Affinity Capture-Western Homo sapiens
Protein-peptide Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
73 DDX5 1655
Affinity Capture-MS Homo sapiens
74 RPL31 6160
Affinity Capture-MS Homo sapiens
75 DHX9 1660
Affinity Capture-MS Homo sapiens
76 TAB2  
Affinity Capture-Western Homo sapiens
77 RPL13A 23521
Affinity Capture-MS Homo sapiens
78 RPL36 25873
Affinity Capture-MS Homo sapiens
79 BICD2 23299
Proximity Label-MS Homo sapiens
80 ULK1  
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
81 RPL27A 6157
Affinity Capture-MS Homo sapiens
82 RPLP1 6176
Affinity Capture-MS Homo sapiens
83 ALYREF 10189
Affinity Capture-MS Homo sapiens
84 PABPN1 8106
Affinity Capture-MS Homo sapiens
85 RPS6 6194
Affinity Capture-MS Homo sapiens
86 RPLP0 6175
Affinity Capture-MS Homo sapiens
87 EIF3H 8667
Affinity Capture-MS Homo sapiens
88 STAMBP 10617
Affinity Capture-Western Homo sapiens
89 DDX39B 7919
Affinity Capture-MS Homo sapiens
90 HNRNPA3 220988
Affinity Capture-MS Homo sapiens
91 RPS15A 6210
Affinity Capture-MS Homo sapiens
92 ENAH 55740
Affinity Capture-MS Homo sapiens
93 GBAS 2631
Affinity Capture-Western Homo sapiens
94 ST13 6767
Affinity Capture-MS Homo sapiens
95 STAM 8027
Affinity Capture-MS Homo sapiens
96 RPL11 6135
Affinity Capture-MS Homo sapiens
97 NUMA1 4926
Affinity Capture-MS Homo sapiens
98 EIF3G 8666
Affinity Capture-MS Homo sapiens
99 TMPO 7112
Affinity Capture-MS Homo sapiens
100 RPL32 6161
Affinity Capture-MS Homo sapiens
101 SMCR8 140775
Two-hybrid Homo sapiens
102 RPL10A 4736
Affinity Capture-MS Homo sapiens
103 CALCOCO2  
Co-localization Homo sapiens
Co-localization Homo sapiens
104 HUS1  
Affinity Capture-MS Homo sapiens
105 RPLP2 6181
Affinity Capture-MS Homo sapiens
106 RPL7A 6130
Affinity Capture-MS Homo sapiens
107 RPL13 6137
Affinity Capture-MS Homo sapiens
108 EMC8 10328
Affinity Capture-MS Homo sapiens
109 EIF4G1 1981
Affinity Capture-MS Homo sapiens
110 RPL35 11224
Affinity Capture-MS Homo sapiens
111 HCFC1 3054
Affinity Capture-MS Homo sapiens
112 ATG12  
Affinity Capture-Western Homo sapiens
113 RPL14 9045
Affinity Capture-MS Homo sapiens
114 RPS7 6201
Affinity Capture-MS Homo sapiens
115 RPL21 6144
Affinity Capture-MS Homo sapiens
116 RPL3 6122
Affinity Capture-MS Homo sapiens
117 EIF4E 1977
Affinity Capture-MS Homo sapiens
118 EPRS 2058
Affinity Capture-MS Homo sapiens
119 RPL7 6129
Affinity Capture-MS Homo sapiens
120 LARS 51520
Affinity Capture-MS Homo sapiens
121 RPS27 6232
Affinity Capture-MS Homo sapiens
122 XRCC6 2547
Affinity Capture-MS Homo sapiens
123 RPS13 6207
Affinity Capture-MS Homo sapiens
124 RPS14 6208
Affinity Capture-MS Homo sapiens
125 RPL35A 6165
Affinity Capture-MS Homo sapiens
126 RPL12 6136
Affinity Capture-MS Homo sapiens
127 RPL22 6146
Affinity Capture-MS Homo sapiens
128 HP1BP3 50809
Affinity Capture-MS Homo sapiens
129 EIF3CL 728689
Affinity Capture-MS Homo sapiens
130 PCGF1 84759
Affinity Capture-MS Homo sapiens
131 OTULIN 90268
Affinity Capture-Western Homo sapiens
132 RPL18 6141
Affinity Capture-MS Homo sapiens
133 KTN1 3895
Affinity Capture-MS Homo sapiens
134 C9orf72  
Affinity Capture-Western Homo sapiens
Co-localization Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
135 GNL3 26354
Affinity Capture-MS Homo sapiens
136 XRCC5 7520
Affinity Capture-MS Homo sapiens
137 EIF3D 8664
Affinity Capture-MS Homo sapiens
138 RPS16 6217
Affinity Capture-MS Homo sapiens
139 AIMP1 9255
Affinity Capture-MS Homo sapiens
140 MTA2 9219
Affinity Capture-MS Homo sapiens
141 TRIM5 85363
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
142 GLUD1 2746
Affinity Capture-MS Homo sapiens
143 PHB2 11331
Affinity Capture-Western Homo sapiens
144 MUL1  
Affinity Capture-Western Homo sapiens
145 RPS25 6230
Affinity Capture-MS Homo sapiens
146 RPS3 6188
Affinity Capture-MS Homo sapiens
147 ILF3 3609
Affinity Capture-MS Homo sapiens
148 RPS2 6187
Affinity Capture-MS Homo sapiens
149 RPL6 6128
Affinity Capture-MS Homo sapiens
150 RPS21 6227
Affinity Capture-MS Homo sapiens
151 EIF3I 8668
Affinity Capture-MS Homo sapiens
152 TCERG1 10915
Affinity Capture-MS Homo sapiens
153 RNF31 55072
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
154 ATG13 9776
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
155 PRRC2C 23215
Affinity Capture-MS Homo sapiens
156 NUFIP2 57532
Affinity Capture-MS Homo sapiens
157 HNRNPA2B1 3181
Affinity Capture-MS Homo sapiens
158 SAFB 6294
Affinity Capture-MS Homo sapiens
159 HMGN5 79366
Affinity Capture-MS Homo sapiens
160 RPTOR 57521
Biochemical Activity Homo sapiens
161 HNRNPM 4670
Affinity Capture-MS Homo sapiens
162 RPS4X 6191
Affinity Capture-MS Homo sapiens
163 RPS15 6209
Affinity Capture-MS Homo sapiens
164 ATG101  
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Co-crystal Structure Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Co-crystal Structure Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
PCA Homo sapiens
165 PRMT1 3276
Affinity Capture-MS Homo sapiens
166 CAPRIN1 4076
Affinity Capture-MS Homo sapiens
167 RPS5 6193
Affinity Capture-MS Homo sapiens
168 HNRNPK 3190
Affinity Capture-MS Homo sapiens
169 RPL34 6164
Affinity Capture-MS Homo sapiens
170 BRK1 55845
Affinity Capture-MS Homo sapiens
171 RPS26 6231
Affinity Capture-MS Homo sapiens
172 RPL39 6170
Affinity Capture-MS Homo sapiens
173 SNRNP40 9410
Affinity Capture-MS Homo sapiens
174 FAM221B  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
175 MAP1LC3A 84557
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Co-crystal Structure Homo sapiens
176 RPL38 6169
Affinity Capture-MS Homo sapiens
177 RPS24 6229
Affinity Capture-MS Homo sapiens
178 BECN1 8678
Affinity Capture-Western Homo sapiens
179 HNRNPL 3191
Affinity Capture-MS Homo sapiens
180 RPL23 9349
Affinity Capture-MS Homo sapiens
181 RPS8 6202
Affinity Capture-MS Homo sapiens
182 RPL8 6132
Affinity Capture-MS Homo sapiens
183 RPL28 6158
Affinity Capture-MS Homo sapiens
184 SERBP1 26135
Affinity Capture-MS Homo sapiens
185 GLRX3 10539
Affinity Capture-MS Homo sapiens
186 RPL23A 6147
Affinity Capture-MS Homo sapiens
187 RARS 5917
Affinity Capture-MS Homo sapiens
188 GNB2L1 10399
Affinity Capture-MS Homo sapiens
189 PTCH1  
Affinity Capture-Western Homo sapiens
190 SESN2 83667
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
191 RANGAP1 5905
Affinity Capture-MS Homo sapiens
192 RPL17 6139
Affinity Capture-MS Homo sapiens
193 PSMD3 5709
Affinity Capture-MS Homo sapiens
194 EIF3L 51386
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which ATG13 is involved
PathwayEvidenceSource
Autophagy TAS Reactome
Macroautophagy TAS Reactome





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