Gene description for RC3H1
Gene name ring finger and CCCH-type domains 1
Gene symbol RC3H1
Other names/aliases RNF198
ROQUIN
Species Homo sapiens
 Database cross references - RC3H1
ExoCarta ExoCarta_149041
Vesiclepedia VP_149041
Entrez Gene 149041
HGNC 29434
MIM 609424
UniProt Q5TC82  
 RC3H1 identified in exosomes derived from the following tissue/cell type
Urine 21595033    
Urine 21595033    
Urine 21595033    
 Gene ontology annotations for RC3H1
Molecular Function
    RNA binding GO:0003723 HDA
    double-stranded RNA binding GO:0003725 IBA
    double-stranded RNA binding GO:0003725 IDA
    mRNA binding GO:0003729 IBA
    mRNA 3'-UTR binding GO:0003730 ISS
    ubiquitin-protein transferase activity GO:0004842 IDA
    protein binding GO:0005515 IPI
    zinc ion binding GO:0008270 ISS
    miRNA binding GO:0035198 ISS
    RNA stem-loop binding GO:0035613 IBA
    RNA stem-loop binding GO:0035613 IDA
    RNA stem-loop binding GO:0035613 ISS
    ubiquitin protein ligase activity GO:0061630 IBA
    ubiquitin protein ligase activity GO:0061630 TAS
    CCR4-NOT complex binding GO:1905762 IMP
Biological Process
    nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184 ISS
    protein polyubiquitination GO:0000209 IBA
    protein polyubiquitination GO:0000209 IDA
    nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay GO:0000288 IBA
    nuclear-transcribed mRNA catabolic process GO:0000956 IDA
    nuclear-transcribed mRNA catabolic process GO:0000956 ISS
    B cell homeostasis GO:0001782 IEA
    regulation of germinal center formation GO:0002634 ISS
    negative regulation of germinal center formation GO:0002635 ISS
    ubiquitin-dependent protein catabolic process GO:0006511 IBA
    post-transcriptional regulation of gene expression GO:0010608 ISS
    negative regulation of B cell proliferation GO:0030889 ISS
    P-body assembly GO:0033962 ISS
    T cell proliferation GO:0042098 IEA
    T cell homeostasis GO:0043029 IEA
    regulation of mRNA stability GO:0043488 ISS
    negative regulation of T-helper cell differentiation GO:0045623 ISS
    negative regulation of activated T cell proliferation GO:0046007 ISS
    lymph node development GO:0048535 IEA
    spleen development GO:0048536 IEA
    T cell receptor signaling pathway GO:0050852 ISS
    regulation of T cell receptor signaling pathway GO:0050856 ISS
    3'-UTR-mediated mRNA destabilization GO:0061158 ISS
    T follicular helper cell differentiation GO:0061470 IEA
    cellular response to interleukin-1 GO:0071347 ISS
    regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay GO:1900151 IMP
    positive regulation of non-canonical NF-kappaB signal transduction GO:1901224 IEA
    negative regulation of T-helper 17 cell differentiation GO:2000320 ISS
    regulation of miRNA metabolic process GO:2000628 ISS
Subcellular Localization
    P-body GO:0000932 IMP
    P-body GO:0000932 ISS
    cytoplasmic stress granule GO:0010494 IBA
    cytoplasmic stress granule GO:0010494 ISS
 Experiment description of studies that identified RC3H1 in exosomes
1
Experiment ID 193
MISEV standards
EM
Biophysical techniques
CD63|CD9
Enriched markers
PHB
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 21595033    
Organism Homo sapiens
Experiment description Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy.
Authors "Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC."
Journal name Proteomics
Publication year 2011
Sample Urine
Sample name Urine - Normal
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 194
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 21595033    
Organism Homo sapiens
Experiment description Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy.
Authors "Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC."
Journal name Proteomics
Publication year 2011
Sample Urine
Sample name Urine - Patients of basement membrane nephropathy
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
3
Experiment ID 195
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 21595033    
Organism Homo sapiens
Experiment description Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy.
Authors "Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC."
Journal name Proteomics
Publication year 2011
Sample Urine
Sample name Urine - Patients of early IgA nephropathy
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for RC3H1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 P4HB 5034
Affinity Capture-MS Homo sapiens
2 TRMT1L 81627
Affinity Capture-MS Homo sapiens
3 SLC1A5 6510
Affinity Capture-MS Homo sapiens
4 UBE2A  
Reconstituted Complex Homo sapiens
5 KRT1 3848
Affinity Capture-MS Homo sapiens
6 PKM 5315
Affinity Capture-MS Homo sapiens
7 SRPK2 6733
Affinity Capture-MS Homo sapiens
8 ZNF668  
Affinity Capture-MS Homo sapiens
9 RCL1 10171
Affinity Capture-MS Homo sapiens
10 TPM2 7169
Affinity Capture-MS Homo sapiens
11 EIF2B2 8892
Affinity Capture-MS Homo sapiens
12 DDX17 10521
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
13 MRPL24  
Affinity Capture-MS Homo sapiens
14 SPNS1 83985
Affinity Capture-MS Homo sapiens
15 MRPL27 51264
Affinity Capture-MS Homo sapiens
16 SLC25A1 6576
Affinity Capture-MS Homo sapiens
17 NHP2L1 4809
Affinity Capture-MS Homo sapiens
18 KPNA2 3838
Affinity Capture-MS Homo sapiens
19 GCN1L1 10985
Affinity Capture-MS Homo sapiens
20 AKAP8L  
Affinity Capture-MS Homo sapiens
21 MSI1  
Affinity Capture-MS Homo sapiens
22 CKB 1152
Affinity Capture-MS Homo sapiens
23 GPATCH4 54865
Affinity Capture-MS Homo sapiens
24 IGF2BP3 10643
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
25 SNRNP70 6625
Affinity Capture-MS Homo sapiens
26 SF3B1 23451
Affinity Capture-MS Homo sapiens
27 RPLP1 6176
Affinity Capture-MS Homo sapiens
28 HSPH1 10808
Affinity Capture-MS Homo sapiens
29 FBL 2091
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
30 SMC2 10592
Affinity Capture-MS Homo sapiens
31 SPTY2D1  
Affinity Capture-MS Homo sapiens
32 KRT31 3881
Affinity Capture-MS Homo sapiens
33 POLRMT 5442
Affinity Capture-MS Homo sapiens
34 SNRPD3 6634
Affinity Capture-MS Homo sapiens
35 ZBTB14  
Affinity Capture-MS Homo sapiens
36 RPS11 6205
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
37 SREK1 140890
Affinity Capture-MS Homo sapiens
38 EEF1A1 1915
Affinity Capture-MS Homo sapiens
39 CKM  
Affinity Capture-MS Homo sapiens
40 CLASP2 23122
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
41 RBMX 27316
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
42 FARSA 2193
Affinity Capture-MS Homo sapiens
43 CMAS 55907
Affinity Capture-MS Homo sapiens
44 CNOT11 55571
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
45 LIN28B  
Affinity Capture-MS Homo sapiens
46 RFC5 5985
Affinity Capture-MS Homo sapiens
47 RRP9 9136
Affinity Capture-MS Homo sapiens
48 SRSF3 6428
Affinity Capture-MS Homo sapiens
49 RPL19 6143
Affinity Capture-MS Homo sapiens
50 MTDH 92140
Affinity Capture-MS Homo sapiens
51 IRAK1  
Affinity Capture-MS Homo sapiens
52 RPL18A 6142
Affinity Capture-MS Homo sapiens
53 PABPC1 26986
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
54 SRBD1  
Affinity Capture-MS Homo sapiens
55 TRIM21 6737
Affinity Capture-MS Homo sapiens
56 OGT 8473
Affinity Capture-MS Homo sapiens
57 RPL31 6160
Affinity Capture-MS Homo sapiens
58 MRPS6  
Affinity Capture-MS Homo sapiens
59 NOC4L 79050
Affinity Capture-MS Homo sapiens
60 SYNCRIP 10492
Affinity Capture-MS Homo sapiens
61 CNOT6L 246175
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
62 HIST1H1C 3006
Affinity Capture-MS Homo sapiens
63 SNRPD1 6632
Affinity Capture-MS Homo sapiens
64 SDAD1  
Affinity Capture-MS Homo sapiens
65 RRP1B 23076
Affinity Capture-MS Homo sapiens
66 SUGP2  
Affinity Capture-MS Homo sapiens
67 C19orf53  
Affinity Capture-MS Homo sapiens
68 GTPBP4 23560
Affinity Capture-MS Homo sapiens
69 SRPK1 6732
Affinity Capture-MS Homo sapiens
70 SLC25A5 292
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
71 CD3EAP  
Affinity Capture-MS Homo sapiens
72 ZNF326 284695
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
73 BCLAF1 9774
Affinity Capture-MS Homo sapiens
74 KRT85  
Affinity Capture-MS Homo sapiens
75 MRPL14 64928
Affinity Capture-MS Homo sapiens
76 HSPA5 3309
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
77 RBM39 9584
Affinity Capture-MS Homo sapiens
78 RNF219  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
79 HADHA 3030
Affinity Capture-MS Homo sapiens
80 NOC3L 64318
Affinity Capture-MS Homo sapiens
81 MRTO4 51154
Affinity Capture-MS Homo sapiens
82 MARK3 4140
Affinity Capture-MS Homo sapiens
83 NOA1  
Affinity Capture-MS Homo sapiens
84 CD2BP2 10421
Affinity Capture-MS Homo sapiens
85 RQCD1 9125
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
86 ACTBL2 345651
Affinity Capture-MS Homo sapiens
87 WDR55  
Affinity Capture-MS Homo sapiens
88 DHX37  
Affinity Capture-MS Homo sapiens
89 WIBG 84305
Affinity Capture-MS Homo sapiens
90 NIP7 51388
Affinity Capture-MS Homo sapiens
91 YTHDC1  
Affinity Capture-MS Homo sapiens
92 ZNF512  
Affinity Capture-MS Homo sapiens
93 TUBA4A 7277
Affinity Capture-MS Homo sapiens
94 PRMT5 10419
Affinity Capture-MS Homo sapiens
95 PATL1 219988
Affinity Capture-MS Homo sapiens
96 PCBP1 5093
Affinity Capture-MS Homo sapiens
97 CMSS1  
Affinity Capture-MS Homo sapiens
98 LTV1  
Affinity Capture-MS Homo sapiens
99 C11orf98  
Affinity Capture-MS Homo sapiens
100 ZCCHC4 29063
Affinity Capture-MS Homo sapiens
101 AP2A2 161
Affinity Capture-MS Homo sapiens
102 HSPA1A 3303
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
103 HSPA4 3308
Affinity Capture-MS Homo sapiens
104 KRR1 11103
Affinity Capture-MS Homo sapiens
105 DTWD2  
Affinity Capture-MS Homo sapiens
106 PABPC3 5042
Affinity Capture-MS Homo sapiens
107 IRF1  
Affinity Capture-RNA Homo sapiens
108 PABPN1 8106
Affinity Capture-MS Homo sapiens
109 GNL3 26354
Affinity Capture-MS Homo sapiens
110 DDX55  
Affinity Capture-MS Homo sapiens
111 RPS16 6217
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
112 U2SURP 23350
Affinity Capture-MS Homo sapiens
113 DDX46 9879
Affinity Capture-MS Homo sapiens
114 YBX1 4904
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
115 NUDT21 11051
Affinity Capture-MS Homo sapiens
116 RPS27A 6233
Affinity Capture-MS Homo sapiens
117 C8orf33 65265
Affinity Capture-MS Homo sapiens
118 WDR77 79084
Affinity Capture-MS Homo sapiens
119 RRS1 23212
Affinity Capture-MS Homo sapiens
120 RBM25 58517
Affinity Capture-MS Homo sapiens
121 EIF3I 8668
Affinity Capture-MS Homo sapiens
122 WWOX 51741
Affinity Capture-MS Homo sapiens
123 PCMT1 5110
Affinity Capture-MS Homo sapiens
124 SRSF9 8683
Affinity Capture-MS Homo sapiens
125 SKP1 6500
Affinity Capture-MS Homo sapiens
126 MORF4L2  
Affinity Capture-MS Homo sapiens
127 DIMT1 27292
Affinity Capture-MS Homo sapiens
128 TBL3 10607
Affinity Capture-MS Homo sapiens
129 G3BP2 9908
Affinity Capture-MS Homo sapiens
130 PUF60 22827
Affinity Capture-MS Homo sapiens
131 TRA2B 6434
Affinity Capture-MS Homo sapiens
132 RPS15A 6210
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
133 SSBP1 6742
Affinity Capture-MS Homo sapiens
134 PWP1 11137
Affinity Capture-MS Homo sapiens
135 WWP2 11060
Affinity Capture-MS Homo sapiens
136 HIST2H3D 653604
Affinity Capture-MS Homo sapiens
137 RPS24 6229
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
138 HIST2H2AA4 723790
Affinity Capture-MS Homo sapiens
139 ALYREF 10189
Affinity Capture-MS Homo sapiens
140 HNRNPL 3191
Affinity Capture-MS Homo sapiens
141 EIF4B 1975
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
142 MRPS16  
Affinity Capture-MS Homo sapiens
143 RPL23A 6147
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
144 PAIP2  
Affinity Capture-MS Homo sapiens
145 CNOT3 4849
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
146 SNRPA1 6627
Affinity Capture-MS Homo sapiens
147 PURA 5813
Affinity Capture-MS Homo sapiens
148 KCTD5 54442
Affinity Capture-MS Homo sapiens
149 HERC5 51191
Affinity Capture-MS Homo sapiens
150 HNRNPH1 3187
Affinity Capture-MS Homo sapiens
151 CELF1 10658
Affinity Capture-MS Homo sapiens
152 AFG3L2 10939
Affinity Capture-MS Homo sapiens
153 TUBA8 51807
Affinity Capture-MS Homo sapiens
154 NCBP1 4686
Affinity Capture-MS Homo sapiens
155 FAM98A 25940
Affinity Capture-MS Homo sapiens
156 ATP5J2-PTCD1  
Affinity Capture-MS Homo sapiens
157 HSPA6 3310
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
158 RPS17 6218
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
159 ALB 213
Affinity Capture-MS Homo sapiens
160 AP2A1 160
Affinity Capture-MS Homo sapiens
161 NOP56 10528
Affinity Capture-MS Homo sapiens
162 PCBP2 5094
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
163 ZFR 51663
Affinity Capture-MS Homo sapiens
164 CNP 1267
Affinity Capture-MS Homo sapiens
165 EIF4A1 1973
Affinity Capture-MS Homo sapiens
166 HSPA4L 22824
Affinity Capture-MS Homo sapiens
167 SRSF2 6427
Affinity Capture-MS Homo sapiens
168 RBM34  
Affinity Capture-MS Homo sapiens
169 RPS3 6188
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
170 DNAJB6 10049
Affinity Capture-MS Homo sapiens
171 RPS18 6222
Affinity Capture-MS Homo sapiens
172 MRPS10 55173
Affinity Capture-MS Homo sapiens
173 EXOSC2 23404
Affinity Capture-MS Homo sapiens
174 UCP3  
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Protein-RNA Homo sapiens
175 HSPA2 3306
Affinity Capture-MS Homo sapiens
176 RBM3 5935
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
177 DDX24 57062
Affinity Capture-MS Homo sapiens
178 HELZ 9931
Affinity Capture-MS Homo sapiens
179 H1FX 8971
Affinity Capture-MS Homo sapiens
180 SPIN1  
Affinity Capture-MS Homo sapiens
181 STK38L 23012
Affinity Capture-MS Homo sapiens
182 RRP12 23223
Affinity Capture-MS Homo sapiens
183 DDX28  
Affinity Capture-MS Homo sapiens
184 NPM1 4869
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
185 SRRM2 23524
Affinity Capture-MS Homo sapiens
186 KRI1  
Affinity Capture-MS Homo sapiens
187 SUN2 25777
Affinity Capture-MS Homo sapiens
188 GRWD1 83743
Affinity Capture-MS Homo sapiens
189 DDX6 1656
Co-fractionation Homo sapiens
190 WIZ 58525
Affinity Capture-MS Homo sapiens
191 HSD17B4 3295
Affinity Capture-MS Homo sapiens
192 RBM42  
Affinity Capture-MS Homo sapiens
193 DHX36 170506
Affinity Capture-MS Homo sapiens
194 LARP4B 23185
Affinity Capture-MS Homo sapiens
195 PES1 23481
Affinity Capture-MS Homo sapiens
196 ATXN2 6311
Affinity Capture-MS Homo sapiens
197 MRPS35 60488
Affinity Capture-MS Homo sapiens
198 USP15 9958
Affinity Capture-MS Homo sapiens
199 HIST2H2AB 317772
Affinity Capture-MS Homo sapiens
200 HNRNPA0 10949
Affinity Capture-MS Homo sapiens
201 PRPF8 10594
Affinity Capture-MS Homo sapiens
202 DDX21 9188
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
203 RPL4 6124
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
204 RBM28 55131
Affinity Capture-MS Homo sapiens
205 PEG10 23089
Affinity Capture-MS Homo sapiens
206 RPF2 84154
Affinity Capture-MS Homo sapiens
207 EIF2A 83939
Affinity Capture-MS Homo sapiens
208 UBAP2L 9898
Affinity Capture-MS Homo sapiens
209 RCC2 55920
Affinity Capture-MS Homo sapiens
210 FAM193A  
Affinity Capture-MS Homo sapiens
211 SNRNP200 23020
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
212 RPL35 11224
Affinity Capture-MS Homo sapiens
213 TUBA1C 84790
Affinity Capture-MS Homo sapiens
214 MRPS18B 28973
Affinity Capture-MS Homo sapiens
215 NKRF 55922
Affinity Capture-MS Homo sapiens
216 NAT10 55226
Affinity Capture-MS Homo sapiens
217 REXO4  
Affinity Capture-MS Homo sapiens
218 NCL 4691
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
219 LUC7L2 51631
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
220 MRPL3  
Affinity Capture-MS Homo sapiens
221 LYAR 55646
Affinity Capture-MS Homo sapiens
222 RPLP0 6175
Affinity Capture-MS Homo sapiens
223 SNRPB2 6629
Affinity Capture-MS Homo sapiens
224 RSL1D1 26156
Affinity Capture-MS Homo sapiens
225 MRPL41 64975
Affinity Capture-MS Homo sapiens
226 HNRNPD 3184
Affinity Capture-MS Homo sapiens
227 ALDH7A1 501
Affinity Capture-MS Homo sapiens
228 RPL32 6161
Affinity Capture-MS Homo sapiens
229 TUBB 203068
Affinity Capture-MS Homo sapiens
230 MAP7 9053
Affinity Capture-MS Homo sapiens
231 AIFM1 9131
Affinity Capture-MS Homo sapiens
232 RPS2 6187
Affinity Capture-MS