Gene description for HERC5
Gene name HECT and RLD domain containing E3 ubiquitin protein ligase 5
Gene symbol HERC5
Other names/aliases CEB1
CEBP1
Species Homo sapiens
 Database cross references - HERC5
ExoCarta ExoCarta_51191
Vesiclepedia VP_51191
Entrez Gene 51191
HGNC 24368
MIM 608242
UniProt Q9UII4  
 HERC5 identified in sEVs derived from the following tissue/cell type
Gastric cancer cells 33991177    
Gastric cancer cells 33991177    
Gastric cancer cells 33991177    
Mesenchymal stem cells Unpublished / Not applicable
 Gene ontology annotations for HERC5
Molecular Function
    RNA binding GO:0003723 HDA
    ubiquitin-protein transferase activity GO:0004842 TAS
    protein binding GO:0005515 IPI
    ISG15 transferase activity GO:0042296 IBA
    ISG15 transferase activity GO:0042296 IDA
    ubiquitin protein ligase activity GO:0061630 IBA
    ubiquitin protein ligase activity GO:0061630 IDA
Biological Process
    regulation of cyclin-dependent protein serine/threonine kinase activity GO:0000079 TAS
    ubiquitin-dependent protein catabolic process GO:0006511 IBA
    protein ubiquitination GO:0016567 IBA
    protein ubiquitination GO:0016567 IDA
    ISG15-protein conjugation GO:0032020 IBA
    ISG15-protein conjugation GO:0032020 IDA
    PKR/eIFalpha signaling GO:0039585 TAS
    innate immune response GO:0045087 IDA
    regulation of defense response to virus GO:0050688 IDA
    defense response to virus GO:0051607 IEA
Subcellular Localization
    cytoplasm GO:0005737 IBA
    cytoplasm GO:0005737 IDA
    cytoplasm GO:0005737 IDA
    cytosol GO:0005829 TAS
    perinuclear region of cytoplasm GO:0048471 IEA
 Experiment description of studies that identified HERC5 in sEVs
1
Experiment ID 363
MISEV standards
Biophysical techniques
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
DCLK1
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 33991177    
Organism Homo sapiens
Experiment description Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors "Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name Proteomics
Publication year 2021
Sample Gastric cancer cells
Sample name MKN1 - 100K pellet
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
2
Experiment ID 364
MISEV standards
Biophysical techniques
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
DCLK1
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 33991177    
Organism Homo sapiens
Experiment description Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors "Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name Proteomics
Publication year 2021
Sample Gastric cancer cells
Sample name MKN1 - 100K pellet
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
3
Experiment ID 365
MISEV standards
Biophysical techniques
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
DCLK1
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 33991177    
Organism Homo sapiens
Experiment description Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors "Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name Proteomics
Publication year 2021
Sample Gastric cancer cells
Sample name MKN1 - 100K pellet
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
4
Experiment ID 126
MISEV standards
Biophysical techniques
GAPDH
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [LTQ-FT Ultra]
PubMed ID Unpublished / Not applicable
Organism Homo sapiens
Experiment description Mesenchymal Stem Cell Exosomes: The Future MSC-based Therapy?
Authors "Ruenn Chai Lai, Ronne Wee Yeh Yeo, Soon Sim Tan, Bin Zhang, Yijun Yin, Newman Siu Kwan Sze, Andre Choo, and Sai Kiang Lim"
Journal name Mesenchymal Stem Cell Therapy
Publication year 2011
Sample Mesenchymal stem cells
Sample name huES9.E1
Isolation/purification methods HPLC
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Antobody array
Mass spectrometry
 Protein-protein interactions for HERC5
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 ISG15 9636
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
2 PITX2  
Reconstituted Complex Homo sapiens
3 ZNF346  
Affinity Capture-MS Homo sapiens
4 ANLN 54443
Affinity Capture-MS Homo sapiens
5 ERCC2 2068
Reconstituted Complex Homo sapiens
6 TMED5 50999
Affinity Capture-MS Homo sapiens
7 RPL13A 23521
Affinity Capture-MS Homo sapiens
8 RPL10 6134
Affinity Capture-MS Homo sapiens
9 RPL15 6138
Affinity Capture-MS Homo sapiens
10 RPL14 9045
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
11 USP36  
Affinity Capture-MS Homo sapiens
12 PARK2  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
13 RPL10A 4736
Affinity Capture-MS Homo sapiens
14 KIF23 9493
Affinity Capture-MS Homo sapiens
15 FBXW7  
Affinity Capture-MS Homo sapiens
16 TMED2 10959
Affinity Capture-MS Homo sapiens
17 NPM1 4869
Affinity Capture-MS Homo sapiens
18 ANOS1 3730
Affinity Capture-MS Homo sapiens
19 ZNF2  
Affinity Capture-MS Homo sapiens
20 SRP14 6727
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
21 PRKRA 8575
Affinity Capture-MS Homo sapiens
22 DNAJC7 7266
Proximity Label-MS Homo sapiens
23 RRP8  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
24 RPS3A 6189
Affinity Capture-MS Homo sapiens
25 NME2 4831
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
26 NOP16 51491
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
27 OASL 8638
Affinity Capture-MS Homo sapiens
28 RPL19 6143
Affinity Capture-MS Homo sapiens
29 HSPA8 3312
Affinity Capture-Western Homo sapiens
30 LIN28A  
Affinity Capture-MS Homo sapiens
31 CD70 970
Affinity Capture-MS Homo sapiens
32 CDKN1A  
Reconstituted Complex Homo sapiens
33 RPL4 6124
Affinity Capture-MS Homo sapiens
34 RPS10 6204
Affinity Capture-MS Homo sapiens
35 RBM4B  
Affinity Capture-MS Homo sapiens
36 SRSF6 6431
Affinity Capture-MS Homo sapiens
37 CCNB1 891
Reconstituted Complex Homo sapiens
38 Srp72  
Affinity Capture-MS Mus musculus
39 RAN 5901
Affinity Capture-Western Homo sapiens
40 NTRK1 4914
Affinity Capture-MS Homo sapiens
41 IFI16 3428
Affinity Capture-MS Homo sapiens
42 HIST1H1E 3008
Affinity Capture-MS Homo sapiens
43 RPL36 25873
Affinity Capture-MS Homo sapiens
44 GSG2  
Affinity Capture-MS Homo sapiens
45 HECTD1 25831
Affinity Capture-MS Homo sapiens
46 RPLP0 6175
Affinity Capture-MS Homo sapiens
47 MAGEB2 4113
Affinity Capture-MS Homo sapiens
48 FGF13  
Affinity Capture-MS Homo sapiens
49 CCDC59  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
50 FGFBP1 9982
Affinity Capture-MS Homo sapiens
51 CCNA2 890
Reconstituted Complex Homo sapiens
52 MAP7 9053
Affinity Capture-MS Homo sapiens
53 ABT1 29777
Affinity Capture-MS Homo sapiens
54 RPS2 6187
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
55 RC3H2  
Affinity Capture-MS Homo sapiens
56 RBM47 54502
Affinity Capture-MS Homo sapiens
57 SIRT7  
Affinity Capture-MS Homo sapiens
58 CTNNB1 1499
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
59 UBE2L6 9246
Reconstituted Complex Homo sapiens
60 Nrip3  
Affinity Capture-MS Mus musculus
61 SURF6  
Affinity Capture-MS Homo sapiens
62 Rrbp1  
Affinity Capture-MS Mus musculus
63 CCNE1  
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
64 TXNRD1 7296
Affinity Capture-Western Homo sapiens
65 RPL3 6122
Affinity Capture-MS Homo sapiens
66 FOXL1  
Affinity Capture-MS Homo sapiens
67 PDCD11 22984
Affinity Capture-MS Homo sapiens
68 ZC3H10  
Affinity Capture-MS Homo sapiens
69 KIAA1467 57613
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
70 NXF2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
71 PRR3  
Affinity Capture-MS Homo sapiens
72 RPL18 6141
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
73 DDRGK1 65992
Affinity Capture-MS Homo sapiens
74 RANBP1 5902
Affinity Capture-Western Homo sapiens
75 UBE2D2 7322
Reconstituted Complex Homo sapiens
76 CCND1 595
Reconstituted Complex Homo sapiens
77 ZC3H3  
Affinity Capture-MS Homo sapiens
78 IRF3 3661
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
79 RBMS2 5939
Affinity Capture-MS Homo sapiens
80 UBE2D1 7321
Reconstituted Complex Homo sapiens
81 RPL13 6137
Affinity Capture-MS Homo sapiens
82 SNCA 6622
Affinity Capture-MS Homo sapiens
83 TMED10 10972
Affinity Capture-MS Homo sapiens
84 ILF3 3609
Affinity Capture-MS Homo sapiens
85 FBXL6  
Affinity Capture-MS Homo sapiens
86 TP53 7157
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
87 STK38 11329
Reconstituted Complex Homo sapiens
88 SUV420H1  
Affinity Capture-MS Homo sapiens
89 DGCR8  
Affinity Capture-MS Homo sapiens
90 SMAD4  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
91 TTK 7272
Affinity Capture-MS Homo sapiens
92 HIST1H1B 3009
Affinity Capture-MS Homo sapiens
93 GPATCH4 54865
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
94 Mta1  
Affinity Capture-MS Mus musculus
95 UFL1 23376
Affinity Capture-MS Homo sapiens
96 RBM4 5936
Affinity Capture-MS Homo sapiens
97 NEIL1  
Affinity Capture-MS Homo sapiens
98 RPL23AP32 56969
Affinity Capture-MS Homo sapiens
99 RPS6 6194
Affinity Capture-MS Homo sapiens
100 FOXM1  
Affinity Capture-MS Homo sapiens
101 RPL23A 6147
Affinity Capture-MS Homo sapiens
102 HNRNPU 3192
Affinity Capture-MS Homo sapiens
103 GNB2L1 10399
Affinity Capture-MS Homo sapiens
104 SRP9 6726
Affinity Capture-MS Homo sapiens
105 RC3H1 149041
Affinity Capture-MS Homo sapiens
106 HERC5 51191
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
View the network image/svg+xml



Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here