Gene description for NIP7
Gene name NIP7, nucleolar pre-rRNA processing protein
Gene symbol NIP7
Other names/aliases CGI-37
HSPC031
KD93
Species Homo sapiens
 Database cross references - NIP7
ExoCarta ExoCarta_51388
Vesiclepedia VP_51388
Entrez Gene 51388
HGNC 24328
UniProt Q9Y221  
 NIP7 identified in exosomes derived from the following tissue/cell type
Chondrocytes 35931686    
Chondrocytes 35931686    
 Gene ontology annotations for NIP7
Molecular Function
    RNA binding GO:0003723 HDA
    protein binding GO:0005515 IPI
Biological Process
    ribosome assembly GO:0042255 IEA
    ribosomal large subunit biogenesis GO:0042273 IBA
Subcellular Localization
    nucleoplasm GO:0005654 IDA
    nucleolus GO:0005730 IBA
    nucleolus GO:0005730 IDA
    cytosol GO:0005829 IDA
    preribosome, large subunit precursor GO:0030687 IBA
 Experiment description of studies that identified NIP7 in exosomes
1
Experiment ID 497
MISEV standards
Biophysical techniques
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name T/C-28a2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 498
MISEV standards
EM
Biophysical techniques
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35931686    
Organism Homo sapiens
Experiment description Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors "Varela-Eirín M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, García-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name Cell Death Dis
Publication year 2022
Sample Chondrocytes
Sample name T/C-28a2
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
 Protein-protein interactions for NIP7
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 RBPMS 11030
Two-hybrid Homo sapiens
2 UBE2H 7328
Affinity Capture-MS Homo sapiens
3 ZNF668  
Affinity Capture-MS Homo sapiens
4 WDR46  
Affinity Capture-MS Homo sapiens
5 NECAB2  
Two-hybrid Homo sapiens
6 CBFB 865
Affinity Capture-MS Homo sapiens
7 COIL  
Proximity Label-MS Homo sapiens
8 DNAJC8 22826
Affinity Capture-MS Homo sapiens
9 ZNF346  
Affinity Capture-MS Homo sapiens
10 RPL30 6156
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
11 SRPK2 6733
Affinity Capture-MS Homo sapiens
12 RIT1 6016
Negative Genetic Homo sapiens
13 LHX2  
Proximity Label-MS Homo sapiens
14 RPL37A 6168
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
15 QKI 9444
Two-hybrid Homo sapiens
16 NOP56 10528
Affinity Capture-MS Homo sapiens
17 RPL10 6134
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
18 KIF20A 10112
Affinity Capture-MS Homo sapiens
19 RPL14 9045
Affinity Capture-MS Homo sapiens
20 PNMAL1  
Affinity Capture-MS Homo sapiens
21 PTBP3 9991
Affinity Capture-MS Homo sapiens
22 SOX2  
Proximity Label-MS Homo sapiens
23 Ssbp1  
Two-hybrid Mus musculus
24 DNAJB6 10049
Proximity Label-MS Homo sapiens
25 USP36  
Affinity Capture-MS Homo sapiens
26 NOL8  
Reconstituted Complex Homo sapiens
Two-hybrid Homo sapiens
27 RPL10A 4736
Affinity Capture-MS Homo sapiens
28 PRR11  
Affinity Capture-MS Homo sapiens
29 KIF23 9493
Affinity Capture-MS Homo sapiens
30 DDX24 57062
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
Reconstituted Complex Homo sapiens
31 Htatsf1  
Two-hybrid Mus musculus
32 FBXW7  
Two-hybrid Homo sapiens
33 PRC1 9055
Affinity Capture-MS Homo sapiens
34 CPSF7 79869
Two-hybrid Homo sapiens
35 NPM1 4869
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
36 ANOS1 3730
Affinity Capture-MS Homo sapiens
37 H2AFY2 55506
Affinity Capture-MS Homo sapiens
38 SRP14 6727
Affinity Capture-MS Homo sapiens
39 ADARB1 104
Affinity Capture-MS Homo sapiens
40 EIF3E 3646
Co-fractionation Homo sapiens
41 PRKRA 8575
Affinity Capture-MS Homo sapiens
42 HINT3 135114
Affinity Capture-MS Homo sapiens
43 DDX18 8886
Co-fractionation Homo sapiens
44 KIF14 9928
Affinity Capture-MS Homo sapiens
45 PES1 23481
Co-fractionation Homo sapiens
46 LIN28A  
Affinity Capture-MS Homo sapiens
47 Cstf2t  
Two-hybrid Mus musculus
48 CHMP4C 92421
Affinity Capture-MS Homo sapiens
49 CLK2 1196
Two-hybrid Homo sapiens
50 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
51 DDX21 9188
Affinity Capture-MS Homo sapiens
52 RPL4 6124
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
53 RBM28 55131
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
54 ZBTB47  
Affinity Capture-MS Homo sapiens
55 Nudt21 68219
Two-hybrid Mus musculus
56 RBM4B  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
57 APOBEC3C 27350
Affinity Capture-MS Homo sapiens
58 SRSF6 6431
Affinity Capture-MS Homo sapiens
59 PURG  
Affinity Capture-MS Homo sapiens
60 NOP2 4839
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
61 HIST1H2AM 8336
Affinity Capture-MS Homo sapiens
62 RPL18A 6142
Affinity Capture-MS Homo sapiens
63 CHMP4B 128866
Affinity Capture-MS Homo sapiens
64 HIST1H1E 3008
Affinity Capture-MS Homo sapiens
65 REXO4  
Affinity Capture-MS Homo sapiens
66 RPL36 25873
Affinity Capture-MS Homo sapiens
67 HIST1H1C 3006
Affinity Capture-MS Homo sapiens
68 LYAR 55646
Affinity Capture-MS Homo sapiens
69 Bbs5  
Two-hybrid Mus musculus
70 RPLP0 6175
Affinity Capture-MS Homo sapiens
71 SRPK3  
Affinity Capture-MS Homo sapiens
72 MAGEB2 4113
Affinity Capture-MS Homo sapiens
73 MYBBP1A 10514
Affinity Capture-MS Homo sapiens
74 GLTSCR2  
Co-fractionation Homo sapiens
75 ZBED1  
Two-hybrid Homo sapiens
76 RPL11 6135
Affinity Capture-MS Homo sapiens
77 RSL1D1 26156
Affinity Capture-MS Homo sapiens
78 CNBP 7555
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
79 ANLN 54443
Affinity Capture-MS Homo sapiens
80 ZBTB2 57621
Affinity Capture-MS Homo sapiens
81 ABT1 29777
Affinity Capture-MS Homo sapiens
82 CHCHD1  
Proximity Label-MS Homo sapiens
83 LMNB1 4001
Affinity Capture-MS Homo sapiens
84 RC3H2  
Affinity Capture-MS Homo sapiens
85 ECT2 1894
Affinity Capture-MS Homo sapiens
86 NPM3 10360
Affinity Capture-MS Homo sapiens
87 Rbm14  
Two-hybrid Mus musculus
88 RPS6 6194
Affinity Capture-MS Homo sapiens
89 SRSF5 6430
Affinity Capture-MS Homo sapiens
90 RPL3 6122
Affinity Capture-MS Homo sapiens
91 NIP7 51388
Two-hybrid Homo sapiens
Two-hybrid Homo sapiens
92 ZC3H10  
Affinity Capture-MS Homo sapiens
93 CRX  
Two-hybrid Homo sapiens
94 GRSF1 2926
Proximity Label-MS Homo sapiens
95 LZTS2 84445
Two-hybrid Homo sapiens
96 RPA3 6119
Proximity Label-MS Homo sapiens
97 CEBPZ  
Co-fractionation Homo sapiens
98 DNAJC9 23234
Proximity Label-MS Homo sapiens
99 RPL22 6146
Affinity Capture-MS Homo sapiens
100 BCAS2 10286
Two-hybrid Homo sapiens
101 DDRGK1 65992
Affinity Capture-MS Homo sapiens
102 ZC3HAV1 56829
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
103 Sf3b2  
Two-hybrid Mus musculus
104 ILF2 3608
Affinity Capture-MS Homo sapiens
105 ZC3H3  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
106 RPL15 6138
Affinity Capture-MS Homo sapiens
107 KIAA1522 57648
Affinity Capture-MS Homo sapiens
108 RPS16 6217
Affinity Capture-MS Homo sapiens
109 RPL13 6137
Affinity Capture-MS Homo sapiens
110 RNF151  
Affinity Capture-MS Homo sapiens
111 SIRT6  
Affinity Capture-MS Homo sapiens
112 ILF3 3609
Affinity Capture-MS Homo sapiens
113 RRS1 23212
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
114 ARF5 381
Affinity Capture-MS Homo sapiens
115 DMRTB1  
Two-hybrid Homo sapiens
116 DGCR8  
Affinity Capture-MS Homo sapiens
117 ZNF48  
Affinity Capture-MS Homo sapiens
118 ELAVL1 1994
Affinity Capture-RNA Homo sapiens
119 DDX58 23586
Affinity Capture-RNA Homo sapiens
120 PRRC2B  
Two-hybrid Homo sapiens
121 NIFK 84365
Affinity Capture-MS Homo sapiens
122 THAP7  
Affinity Capture-MS Homo sapiens
123 KRR1 11103
Affinity Capture-MS Homo sapiens
124 NEIL1  
Affinity Capture-MS Homo sapiens
125 SRSF3 6428
Affinity Capture-MS Homo sapiens
126 RPL7A 6130
Affinity Capture-MS Homo sapiens
127 RPL23AP32 56969
Affinity Capture-MS Homo sapiens
128 Fez2  
Two-hybrid Mus musculus
129 Rrbp1  
Affinity Capture-MS Mus musculus
130 RPL8 6132
Affinity Capture-MS Homo sapiens
131 RPL28 6158
Affinity Capture-MS Homo sapiens
132 KRAS 3845
Negative Genetic Homo sapiens
133 HNRNPU 3192
Affinity Capture-MS Homo sapiens
134 RC3H1 149041
Affinity Capture-MS Homo sapiens
135 PHF8  
Affinity Capture-MS Homo sapiens
View the network image/svg+xml



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