Gene ontology annotations for DOCK4
Experiment description of studies that identified DOCK4 in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
226
MISEV standards
✔
EM
Biophysical techniques
✔
GAPDH|CD9|FLOT1
Enriched markers
✔
LMNA|H2AFX|ATP5A1|TOMM20
Negative markers
✘
Particle analysis
Identified molecule
mRNA
Identification method
Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID
26027894
Organism
Homo sapiens
Experiment description
"Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting"
Authors
"Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar"
Journal name
Journal of Extracellular Vesicles
Publication year
2015
Sample
Endothelial cells
Sample name
HMEC-1
Isolation/purification methods
Differential ultracentrifugation Sucrose density gradient
Flotation density
1.10 g/mL
Molecules identified in the study
miRNA Protein snoRNA lncRNA yRNA snRNA mRNA ncRNA mtRNA vtRNA scaRNA lincRNA
Methods used in the study
Small RNA sequencing (Illumina HiSeq 2000 (Solexa) Western blotting
6
Experiment ID
488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Homo sapiens
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Mesenchymal stem cells
Sample name
UCMSC
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
Protein-protein interactions for DOCK4
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
UBE2H
7328
Affinity Capture-MS
Homo sapiens
2
GYPA
Affinity Capture-MS
Homo sapiens
3
GRK5
2869
Affinity Capture-MS
Homo sapiens
4
ERMAP
114625
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
5
ARHGEF17
9828
Affinity Capture-MS
Homo sapiens
6
PLEKHA4
57664
Affinity Capture-MS
Homo sapiens
7
MUL1
Affinity Capture-MS
Homo sapiens
8
EFNA4
Affinity Capture-MS
Homo sapiens
9
ELMO3
79767
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
10
GRB2
2885
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Two-hybrid
Homo sapiens
11
ELMO1
9844
Affinity Capture-MS
Homo sapiens
Two-hybrid
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
12
GAR1
54433
Affinity Capture-MS
Homo sapiens
13
YWHAB
7529
Affinity Capture-MS
Homo sapiens
14
PFN1
5216
Proximity Label-MS
Homo sapiens
15
KRT8
3856
Proximity Label-MS
Homo sapiens
16
NPTN
27020
Affinity Capture-MS
Homo sapiens
17
RPL22L1
200916
Affinity Capture-MS
Homo sapiens
18
FASLG
356
Protein-peptide
Homo sapiens
19
ARHGAP11B
Affinity Capture-MS
Homo sapiens
20
VSIG8
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
21
EGFR
1956
Affinity Capture-MS
Homo sapiens
22
EIF4A3
9775
Affinity Capture-MS
Homo sapiens
23
ELMO2
63916
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
24
OCIAD1
54940
Affinity Capture-MS
Homo sapiens
25
RNF115
Two-hybrid
Homo sapiens
26
ARHGEF1
9138
Affinity Capture-MS
Homo sapiens
27
MAPRE3
Proximity Label-MS
Homo sapiens
28
RPS20
6224
Cross-Linking-MS (XL-MS)
Homo sapiens
29
ITSN1
6453
Affinity Capture-MS
Homo sapiens
30
STAT1
6772
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
31
HNRNPL
3191
Affinity Capture-MS
Homo sapiens
32
ARHGAP36
Affinity Capture-MS
Homo sapiens
33
ARRB1
408
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
34
NTRK1
4914
Affinity Capture-MS
Homo sapiens
35
PXN
5829
Proximity Label-MS
Homo sapiens
36
HSPA1A
3303
Cross-Linking-MS (XL-MS)
Homo sapiens
37
Abr
109934
Affinity Capture-MS
Mus musculus
38
BICD2
23299
Proximity Label-MS
Homo sapiens
39
BICD1
636
Proximity Label-MS
Homo sapiens
40
MAGOH
4116
Affinity Capture-MS
Homo sapiens
41
DOCK3
Affinity Capture-MS
Homo sapiens
42
DGCR2
9993
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which DOCK4 is involved