Gene description for CTSB
Gene name cathepsin B
Gene symbol CTSB
Other names/aliases APPS
CPSB
Species Homo sapiens
 Database cross references - CTSB
ExoCarta ExoCarta_1508
Entrez Gene 1508
HGNC 2527
MIM 116810
UniProt P07858  
 CTSB identified in exosomes derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
Hepatocytes 26054723    
Keratinocytes 19530224    
Keratinocytes 19530224    
Saliva 19199708    
Thymus 23844026    
 Gene ontology annotations for CTSB
Molecular Function
    protein binding GO:0005515 IPI
    peptidase activity GO:0008233 IDA
    proteoglycan binding GO:0043394 IPI
    cysteine-type endopeptidase activity GO:0004197 IDA
    cysteine-type peptidase activity GO:0008234 IDA
    collagen binding GO:0005518 IDA
Biological Process
    extracellular matrix disassembly GO:0022617 TAS
    proteolysis involved in cellular protein catabolic process GO:0051603 IDA
    cellular response to thyroid hormone stimulus GO:0097067 IEP
    extracellular matrix organization GO:0030198 TAS
    proteolysis GO:0006508 IDA
    toll-like receptor signaling pathway GO:0002224 TAS
    epithelial cell differentiation GO:0030855 IEP
    regulation of catalytic activity GO:0050790 IEA
    innate immune response GO:0045087 TAS
    collagen catabolic process GO:0030574 TAS
    decidualization GO:0046697 IEA
    regulation of apoptotic process GO:0042981 TAS
Subcellular Localization
    melanosome GO:0042470 IEA
    nucleolus GO:0005730 IDA
    extracellular region GO:0005576 TAS
    mitochondrion GO:0005739 IEA
    perinuclear region of cytoplasm GO:0048471 IDA
    endolysosome lumen GO:0036021 TAS
    intracellular membrane-bounded organelle GO:0043231 IDA
    extracellular space GO:0005615 ISS
    lysosome GO:0005764 IDA
    intracellular GO:0005622 TAS
    extracellular exosome GO:0070062 IDA
 Experiment description of studies that identified CTSB in exosomes
1
Experiment ID 235
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix|HSC70|GAPDH
EV Cytosolic markers
EV Membrane markers
HSP90B1
EV Negative markers
qNano
EV Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
2
Experiment ID 237
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix|HSC70|GAPDH
EV Cytosolic markers
EV Membrane markers
HSP90B1
EV Negative markers
qNano
EV Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocytes
Sample name MIHA
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RNA Sequencing
3
Experiment ID 189
ISEV standards
EM
EV Biophysical techniques
EV Cytosolic markers
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19530224    
Organism Homo sapiens
Experiment description Profile of exosomes related proteins released by differentiated and undifferentiated human keratinocytes.
Authors Chavez-Muñoz C, Kilani RT, Ghahary A.
Journal name J Cell Physiol
Publication year 2009
Sample Keratinocytes
Sample name Keratinocytes - Differentiated
Isolation/purification methods Differential centrifugation
Filtration
Sucrose cushion
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
4
Experiment ID 190
ISEV standards
EM
EV Biophysical techniques
HSC70
EV Cytosolic markers
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19530224    
Organism Homo sapiens
Experiment description Profile of exosomes related proteins released by differentiated and undifferentiated human keratinocytes.
Authors Chavez-Muñoz C, Kilani RT, Ghahary A.
Journal name J Cell Physiol
Publication year 2009
Sample Keratinocytes
Sample name Keratinocytes - Undifferentiated
Isolation/purification methods Differential centrifugation
Filtration
Sucrose cushion
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
5
Experiment ID 66
ISEV standards
IEM
EV Biophysical techniques
TSG101|Alix
EV Cytosolic markers
CD63|CD81
EV Membrane markers
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19199708    
Organism Homo sapiens
Experiment description Proteomic analysis of human parotid gland exosomes by multidimensional protein identification technology (MudPIT).
Authors Gonzalez-Begne M, Lu B, Han X, Hagen FK, Hand AR, Melvin JE, Yates JR
Journal name JPR
Publication year 2009
Sample Saliva
Sample name Saliva
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
Immunoelectron Microscopy
6
Experiment ID 217
ISEV standards
EM
EV Biophysical techniques
TSG101
EV Cytosolic markers
CD81|CD9|CD63
EV Membrane markers
EV Negative markers
NTA
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O.
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for CTSB
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 A2M 2
Invitro Homo sapiens
2 CST7  
Invitro Homo sapiens
Invitro Homo sapiens
Affinity Capture-MS Homo sapiens
3 BAG6 7917
Two-hybrid Homo sapiens
4 CST3 1471
Invitro Homo sapiens
Reconstituted Complex Homo sapiens
5 ANXA2 302
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
6 S100A10 6281
Two-hybrid Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
7 CSTB 1476
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
8 CSTA 1475
Invivo Homo sapiens
Invitro Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
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