Gene description for UTP3
Gene name UTP3, small subunit (SSU) processome component, homolog (S. cerevisiae)
Gene symbol UTP3
Other names/aliases CRL1
CRLZ1
SAS10
Species Homo sapiens
 Database cross references - UTP3
ExoCarta ExoCarta_57050
Vesiclepedia VP_57050
Entrez Gene 57050
HGNC 24477
MIM 611614
UniProt Q9NQZ2  
 UTP3 identified in exosomes derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
 Gene ontology annotations for UTP3
Molecular Function
    RNA binding GO:0003723 HDA
    protein binding GO:0005515 IPI
Biological Process
    maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000462 IBA
    chromatin organization GO:0006325 IEA
    brain development GO:0007420 ISS
    ribosomal small subunit biogenesis GO:0042274 IDA
Subcellular Localization
    nucleus GO:0005634 ISS
    nucleoplasm GO:0005654 TAS
    nucleolus GO:0005730 IBA
    nucleolus GO:0005730 IDA
    small-subunit processome GO:0032040 IBA
    small-subunit processome GO:0032040 IDA
 Experiment description of studies that identified UTP3 in exosomes
1
Experiment ID 489
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
 Protein-protein interactions for UTP3
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 RPSA 3921
Affinity Capture-MS Homo sapiens
2 CDC14B 8555
Proximity Label-MS Homo sapiens
3 ZNF668  
Affinity Capture-MS Homo sapiens
4 RPSAP58 388524
Affinity Capture-MS Homo sapiens
5 H1FNT  
Affinity Capture-MS Homo sapiens
6 RSL1D1 26156
Affinity Capture-MS Homo sapiens
7 ZNF346  
Affinity Capture-MS Homo sapiens
8 KCTD10 83892
Affinity Capture-MS Homo sapiens
9 RIT1 6016
Negative Genetic Homo sapiens
10 PTN  
Two-hybrid Homo sapiens
11 RPL37A 6168
Affinity Capture-MS Homo sapiens
12 NOP56 10528
Proximity Label-MS Homo sapiens
13 RPS19 6223
Affinity Capture-MS Homo sapiens
14 CHCHD1  
Proximity Label-MS Homo sapiens
15 RPL14 9045
Affinity Capture-MS Homo sapiens
16 DVL3 1857
Two-hybrid Homo sapiens
17 FGF3  
Affinity Capture-MS Homo sapiens
18 DIEXF  
Affinity Capture-MS Homo sapiens
19 SOX2  
Affinity Capture-MS Homo sapiens
20 CENPA  
Proximity Label-MS Homo sapiens
21 APEX1 328
Proximity Label-MS Homo sapiens
22 DDX23 9416
Proximity Label-MS Homo sapiens
23 CEP70  
Two-hybrid Homo sapiens
24 KIF23 9493
Affinity Capture-MS Homo sapiens
25 UBE2O 63893
Affinity Capture-MS Homo sapiens
26 IMP3 55272
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
27 MPHOSPH10 10199
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
28 PRC1 9055
Affinity Capture-MS Homo sapiens
29 NPM1 4869
Affinity Capture-MS Homo sapiens
30 ANOS1 3730
Affinity Capture-MS Homo sapiens
31 FBL 2091
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
32 POLR1E  
Proximity Label-MS Homo sapiens
33 ZNF2  
Affinity Capture-MS Homo sapiens
34 ADARB1 104
Affinity Capture-MS Homo sapiens
35 PRKRA 8575
Affinity Capture-MS Homo sapiens
36 EXOSC4 54512
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
37 TUBA3C 7278
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
38 HAP1  
Two-hybrid Homo sapiens
39 MYCN  
Affinity Capture-MS Homo sapiens
40 OASL 8638
Affinity Capture-MS Homo sapiens
41 CSNK2B 1460
Affinity Capture-MS Homo sapiens
42 OBSL1 23363
Affinity Capture-MS Homo sapiens
43 KIF14 9928
Affinity Capture-MS Homo sapiens
44 LIN28A  
Affinity Capture-MS Homo sapiens
45 E2F4  
Affinity Capture-MS Homo sapiens
46 RPS10 6204
Affinity Capture-MS Homo sapiens
47 RBM4B  
Affinity Capture-MS Homo sapiens
48 SRSF6 6431
Affinity Capture-MS Homo sapiens
49 OGT 8473
Reconstituted Complex Homo sapiens
50 RPL31 6160
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
51 HIST1H1E 3008
Affinity Capture-MS Homo sapiens
52 SYNCRIP 10492
Affinity Capture-MS Homo sapiens
53 HIST1H2BG 8339
Proximity Label-MS Homo sapiens
54 HECTD1 25831
Affinity Capture-MS Homo sapiens
55 RPLP0 6175
Affinity Capture-MS Homo sapiens
56 MAGEB2 4113
Affinity Capture-MS Homo sapiens
57 C1orf131  
Two-hybrid Homo sapiens
58 CDX1  
Affinity Capture-MS Homo sapiens
59 FGF13  
Affinity Capture-MS Homo sapiens
60 GLTSCR2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
61 CD3EAP  
Proximity Label-MS Homo sapiens
62 WDR46  
Affinity Capture-MS Homo sapiens
63 SCARNA22  
Affinity Capture-RNA Homo sapiens
64 ANLN 54443
Affinity Capture-MS Homo sapiens
65 FGFBP1 9982
Affinity Capture-MS Homo sapiens
66 CTNNA2 1496
Affinity Capture-MS Homo sapiens
67 RHOU 58480
Reconstituted Complex Homo sapiens
68 ESF1 51575
Co-fractionation Homo sapiens
69 ABT1 29777
Affinity Capture-MS Homo sapiens
70 RPS2 6187
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
71 ZHX1  
Two-hybrid Homo sapiens
72 SRSF1 6426
Affinity Capture-MS Homo sapiens
73 USP36  
Affinity Capture-MS Homo sapiens
74 RPS8 6202
Affinity Capture-MS Homo sapiens
75 RPL3 6122
Affinity Capture-MS Homo sapiens
76 EGFR 1956
Negative Genetic Homo sapiens
77 ZC3H10  
Affinity Capture-MS Homo sapiens
78 MYC  
Affinity Capture-MS Homo sapiens
79 RPA3 6119
Proximity Label-MS Homo sapiens
80 HIST1H1A 3024
Affinity Capture-MS Homo sapiens
81 RPL18 6141
Affinity Capture-MS Homo sapiens
82 ZC3HAV1 56829
Affinity Capture-MS Homo sapiens
83 H2AFB2  
Affinity Capture-MS Homo sapiens
84 RPL11 6135
Affinity Capture-MS Homo sapiens
85 NGDN  
Co-fractionation Homo sapiens
86 RPS16 6217
Affinity Capture-MS Homo sapiens
87 ZNF574  
Affinity Capture-MS Homo sapiens
88 RPL13 6137
Affinity Capture-MS Homo sapiens
89 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
90 SIRT6  
Affinity Capture-MS Homo sapiens
91 PARP1 142
Proximity Label-MS Homo sapiens
92 PDGFB  
Affinity Capture-MS Homo sapiens
93 CDCA7L  
Two-hybrid Homo sapiens
94 DGCR8  
Affinity Capture-MS Homo sapiens
95 MKI67  
Affinity Capture-MS Homo sapiens
96 NIFK 84365
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
97 TF 7018
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
98 ESR1  
Affinity Capture-MS Homo sapiens
99 DHX40  
Proximity Label-MS Homo sapiens
100 KRR1 11103
Affinity Capture-MS Homo sapiens
101 LARP7 51574
Affinity Capture-MS Homo sapiens
102 NEIL1  
Affinity Capture-MS Homo sapiens
103 RPS24 6229
Proximity Label-MS Homo sapiens
104 GTPBP4 23560
Co-fractionation Homo sapiens
105 RPL7A 6130
Affinity Capture-MS Homo sapiens
106 RPS6 6194
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
107 RPL8 6132
Affinity Capture-MS Homo sapiens
108 C1QBP 708
Proximity Label-MS Homo sapiens
109 RPL23A 6147
Affinity Capture-MS Homo sapiens
110 KRAS 3845
Negative Genetic Homo sapiens
111 RPL36AL 6166
Affinity Capture-MS Homo sapiens
112 HIST1H2AE 3012
Affinity Capture-MS Homo sapiens
113 RPL17 6139
Affinity Capture-MS Homo sapiens
114 IMP4  
Co-fractionation Homo sapiens
View the network image/svg+xml



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