Gene ontology annotations for HBA2
Experiment description of studies that identified HBA2 in exosomes
1
Experiment ID
76
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|GAPDH|HSP90|CD81|CD9|CD63|LAMP1|MHCI
Enriched markers
✔
HSP90B1
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20224111
Organism
Homo sapiens
Experiment description
Proteomics analysis of bladder cancer exosomes.
Authors
"Welton JL, Khanna S, Giles PJ, Brennan P, Brewis IA, Staffurth J, Mason MD, Clayton A."
Journal name
MCP
Publication year
2010
Sample
Bladder cancer cells
Sample name
HT1376
Isolation/purification methods
Differential centrifugation Sucrose density gradient
Flotation density
1.10-1.19 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [MALDI TOF/TOF] Western blotting FACS
2
Experiment ID
282
MISEV standards
✔
CEM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81|EpCAM
Enriched markers
✘
Negative markers
✔
DLS
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25890246
Organism
Homo sapiens
Experiment description
Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.
Authors
"Xu R, Greening DW, Rai A, Ji H, Simpson RJ."
Journal name
Methods
Publication year
2015
Sample
Colorectal cancer cells
Sample name
LIM1863 - Ultracentrifugation - Rep 1
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Centrifugal concentration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry Western blotting
3
Experiment ID
283
MISEV standards
✔
CEM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81|EpCAM
Enriched markers
✘
Negative markers
✔
DLS
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25890246
Organism
Homo sapiens
Experiment description
Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.
Authors
"Xu R, Greening DW, Rai A, Ji H, Simpson RJ."
Journal name
Methods
Publication year
2015
Sample
Colorectal cancer cells
Sample name
LIM1863 - Ultracentrifugation - Rep 2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Centrifugal concentration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry Western blotting
4
Experiment ID
285
MISEV standards
✔
CEM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81|EpCAM
Enriched markers
✘
Negative markers
✔
DLS
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25890246
Organism
Homo sapiens
Experiment description
Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct.
Authors
"Xu R, Greening DW, Rai A, Ji H, Simpson RJ."
Journal name
Methods
Publication year
2015
Sample
Colorectal cancer cells
Sample name
LIM1863 - Sequential centrifugal ultrafiltration - Rep 1
Isolation/purification methods
Differential centrifugation Filtration Sequential centrifugal ultrafiltration Centrifugal concentration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry Western blotting
5
Experiment ID
363
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
6
Experiment ID
364
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
7
Experiment ID
365
MISEV standards
✘
Biophysical techniques
✔
TSG101|GAPDH|AQP1|CD151|CD81|CD82|CD9|EPCAM|FLOT1|FLOT2|ICAM1|ITGA2B|LAMP2|RAB35|RAB5A|RAB5B|SDCBP|TFRC|UCHL1
Enriched markers
✔
DCLK1
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
33991177
Organism
Homo sapiens
Experiment description
Cancer stem cell marker DCLK1 reprograms small extracellular vesicles toward migratory phenotype in gastric cancer cells
Authors
"Carli ALE, Afshar-Sterle S, Rai A, Fang H, O'Keefe R, Tse J, Ferguson FM, Gray NS, Ernst M, Greening DW, Buchert M."
Journal name
Proteomics
Publication year
2021
Sample
Gastric cancer cells
Sample name
MKN1 - 100K pellet
Isolation/purification methods
Differential centrifugation Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
8
Experiment ID
211
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
cytochrome c|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
IGROV1
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
9
Experiment ID
212
MISEV standards
✔
CEM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
Cytochrome C|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
OVCAR-3
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
10
Experiment ID
44
MISEV standards
✔
IEM
Biophysical techniques
✘
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
19028452
Organism
Homo sapiens
Experiment description
Proteomic profiling of human plasma exosomes identifies PPARgamma as an exosome-associated protein.
Authors
"Looze C, Yui D, Leung L, Ingham M, Kaler M, Yao X, Wu WW, Shen RF, Daniels MP, Levine SJ"
Journal name
BBRC
Publication year
2009
Sample
Plasma
Sample name
Plasma
Isolation/purification methods
Filtration Size exclusion Sucrose density gradient
Flotation density
1.15-1.16 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry [LTQ] Western blotting Immunoelectron Microscopy
11
Experiment ID
834
MISEV standards
✔
EM
Biophysical techniques
✔
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35333565
Organism
Homo sapiens
Experiment description
LAMP2A regulates the loading of proteins into exosomes
Authors
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name
Sci Adv
Publication year
2022
Sample
Retinal pigment epithelial cells
Sample name
ARPE-19
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
12
Experiment ID
835
MISEV standards
✔
EM
Biophysical techniques
✔
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35333565
Organism
Homo sapiens
Experiment description
LAMP2A regulates the loading of proteins into exosomes
Authors
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name
Sci Adv
Publication year
2022
Sample
Retinal pigment epithelial cells
Sample name
ARPE-19
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
13
Experiment ID
217
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|CD81|CD9|CD63
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23844026
Organism
Homo sapiens
Experiment description
Characterization of human thymic exosomes.
Authors
"Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name
PLoS One
Publication year
2013
Sample
Thymus
Sample name
Normal-Thymus
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
14
Experiment ID
196
MISEV standards
✔
EM
Biophysical techniques
✔
Alix|TSG101|HSP70|CD9
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
22418980
Organism
Homo sapiens
Experiment description
A multiplex quantitative proteomics strategy for protein biomarker studies in urinary exosomes.
Authors
"Raj DA, Fiume I, Capasso G, Pocsfalvi G."
Journal name
Kidney Int
Publication year
2012
Sample
Urine
Sample name
Urine - Normal high density
Isolation/purification methods
Differential centrifugation Sucrose cushion
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
15
Experiment ID
197
MISEV standards
✔
EM
Biophysical techniques
✔
Alix|TSG101|HSP70|CD9
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
22418980
Organism
Homo sapiens
Experiment description
A multiplex quantitative proteomics strategy for protein biomarker studies in urinary exosomes.
Authors
"Raj DA, Fiume I, Capasso G, Pocsfalvi G."
Journal name
Kidney Int
Publication year
2012
Sample
Urine
Sample name
Urine - Normal low density
Isolation/purification methods
Differential centrifugation Sucrose cushion
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for HBA2
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
TRAF3IP3
Affinity Capture-MS
Homo sapiens
2
CSTL1
Affinity Capture-MS
Homo sapiens
3
HBB
3043
Two-hybrid
Homo sapiens
4
HBD
3045
Two-hybrid
Homo sapiens
5
MACROD1
28992
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
6
SSR2
Affinity Capture-MS
Homo sapiens
7
HBE1
3046
Two-hybrid
Homo sapiens
8
UGT2A3
Affinity Capture-MS
Homo sapiens
9
ACAA1
30
Affinity Capture-MS
Homo sapiens
10
LPAR6
Affinity Capture-MS
Homo sapiens
11
ALB
213
Affinity Capture-MS
Homo sapiens
12
FGF4
Affinity Capture-MS
Homo sapiens
13
HIST1H2BJ
8970
Affinity Capture-MS
Homo sapiens
14
AGA
175
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
15
RIC8A
60626
Affinity Capture-MS
Homo sapiens
16
GBP2
Affinity Capture-MS
Homo sapiens
17
C9orf85
Affinity Capture-MS
Homo sapiens
18
IGSF8
93185
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
19
NUFIP1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
20
KRT40
Two-hybrid
Homo sapiens
21
OBSL1
23363
Affinity Capture-MS
Homo sapiens
22
RER1
11079
Affinity Capture-MS
Homo sapiens
23
ALK
238
Affinity Capture-MS
Homo sapiens
24
ITGA4
3676
Affinity Capture-MS
Homo sapiens
25
DGCR2
9993
Affinity Capture-MS
Homo sapiens
26
UCHL5
51377
Reconstituted Complex
Homo sapiens
27
MSL2
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
28
VCAM1
7412
Affinity Capture-MS
Homo sapiens
29
FCGR1A
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
30
SDCBP
6386
Affinity Capture-MS
Homo sapiens
31
HSPA8
3312
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
32
UBE2V1
7335
Affinity Capture-MS
Homo sapiens
33
KRT34
Two-hybrid
Homo sapiens
34
MANSC1
54682
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
35
C1orf228
Affinity Capture-MS
Homo sapiens
36
TSPAN33
340348
Affinity Capture-MS
Homo sapiens
37
PLXNB1
5364
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
38
PARK2
Affinity Capture-MS
Homo sapiens
39
PNKP
11284
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
40
DHRS2
10202
Affinity Capture-MS
Homo sapiens
41
NDUFAF5
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
42
TAF12
Affinity Capture-MS
Homo sapiens
43
NXPH2
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
44
GPR182
Affinity Capture-MS
Homo sapiens
45
RLIM
51132
Affinity Capture-MS
Homo sapiens
46
DNAJA1
3301
Affinity Capture-MS
Homo sapiens
47
ARHGEF6
9459
Affinity Capture-MS
Homo sapiens
48
KLK10
5655
Affinity Capture-MS
Homo sapiens
49
GIP
Affinity Capture-MS
Homo sapiens
50
DKK2
Affinity Capture-MS
Homo sapiens
51
SDHD
Affinity Capture-MS
Homo sapiens
52
NOTCH2NL
388677
Two-hybrid
Homo sapiens
53
RPL32
6161
Affinity Capture-MS
Homo sapiens
54
HBG2
3048
Two-hybrid
Homo sapiens
55
HMGCLL1
Affinity Capture-MS
Homo sapiens
56
TNFSF8
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
57
CCDC57
284001
Two-hybrid
Homo sapiens
58
IQCB1
Affinity Capture-MS
Homo sapiens
59
GADD45B
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
60
CD28
Affinity Capture-MS
Homo sapiens
61
EGFR
1956
Affinity Capture-MS
Homo sapiens
62
HSD17B10
3028
Affinity Capture-MS
Homo sapiens
63
UPF3A
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
64
PLLP
Affinity Capture-MS
Homo sapiens
65
MAPK6
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
66
OPTC
Affinity Capture-MS
Homo sapiens
67
SLC2A14
144195
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
68
DLST
1743
Affinity Capture-MS
Homo sapiens
69
PXK
54899
Affinity Capture-MS
Homo sapiens
70
GSTT1
2952
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
71
FN1
2335
Affinity Capture-MS
Homo sapiens
72
SCGB1D1
Affinity Capture-MS
Homo sapiens
73
FCGRT
2217
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
74
SPP1
6696
Two-hybrid
Homo sapiens
75
PGPEP1
54858
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
76
GDPD1
284161
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
77
NBPF19
Two-hybrid
Homo sapiens
78
LATS1
Affinity Capture-MS
Homo sapiens
79
FBLN7
Affinity Capture-MS
Homo sapiens
80
HLA-DPA1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
81
STMN3
Affinity Capture-MS
Homo sapiens
82
KLHL22
84861
Affinity Capture-MS
Homo sapiens
83
CUL7
9820
Affinity Capture-MS
Homo sapiens
84
DTWD1
Affinity Capture-MS
Homo sapiens
85
NUP210P1
Affinity Capture-MS
Homo sapiens
86
MATN2
4147
Affinity Capture-MS
Homo sapiens
87
C1QL3
Affinity Capture-MS
Homo sapiens
88
P2RX6
Affinity Capture-MS
Homo sapiens
89
CXCL16
58191
Affinity Capture-MS
Homo sapiens
90
DKKL1
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which HBA2 is involved