Gene description for EXOSC3
Gene name exosome component 3
Gene symbol EXOSC3
Other names/aliases CGI-102
PCH1B
RRP40
Rrp40p
bA3J10.7
hRrp-40
p10
Species Homo sapiens
 Database cross references - EXOSC3
ExoCarta ExoCarta_51010
Vesiclepedia VP_51010
Entrez Gene 51010
HGNC 17944
MIM 606489
UniProt Q9NQT5  
 EXOSC3 identified in sEVs derived from the following tissue/cell type
Squamous carcinoma cells 20124223    
Thymus 23844026    
 Gene ontology annotations for EXOSC3
Molecular Function
    3'-5'-RNA exonuclease activity GO:0000175 NAS
    RNA binding GO:0003723 IBA
    RNA exonuclease activity GO:0004532 IDA
    protein binding GO:0005515 IPI
Biological Process
    exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) GO:0000467 IBA
    nuclear-transcribed mRNA catabolic process GO:0000956 IBA
    rRNA processing GO:0006364 IDA
    RNA processing GO:0006396 IDA
    RNA catabolic process GO:0006401 IDA
    mRNA catabolic process GO:0006402 IMP
    U4 snRNA 3'-end processing GO:0034475 IBA
    DNA deamination GO:0045006 IDA
    isotype switching GO:0045190 ISS
    positive regulation of isotype switching GO:0045830 IEA
    CUT catabolic process GO:0071034 IBA
    CUT catabolic process GO:0071034 IMP
    nuclear polyadenylation-dependent rRNA catabolic process GO:0071035 IBA
    TRAMP-dependent tRNA surveillance pathway GO:0071038 IBA
    poly(A)-dependent snoRNA 3'-end processing GO:0071051 IBA
Subcellular Localization
    nuclear exosome (RNase complex) GO:0000176 IBA
    nuclear exosome (RNase complex) GO:0000176 IDA
    nuclear exosome (RNase complex) GO:0000176 NAS
    cytoplasmic exosome (RNase complex) GO:0000177 IBA
    cytoplasmic exosome (RNase complex) GO:0000177 IDA
    cytoplasmic exosome (RNase complex) GO:0000177 NAS
    exosome (RNase complex) GO:0000178 IDA
    exosome (RNase complex) GO:0000178 NAS
    euchromatin GO:0000791 IMP
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    nucleolus GO:0005730 IDA
    cytoplasm GO:0005737 IDA
    cytosol GO:0005829 IDA
    cytosol GO:0005829 TAS
    nucleolar exosome (RNase complex) GO:0101019 NAS
 Experiment description of studies that identified EXOSC3 in sEVs
1
Experiment ID 191
MISEV standards
Biophysical techniques
Alix|CD81|CD9
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 20124223    
Organism Homo sapiens
Experiment description Hypoxic tumor cell modulates its microenvironment to enhance angiogenic and metastatic potential by secretion of proteins and exosomes.
Authors "Park JE, Tan HS, Datta A, Lai RC, Zhang H, Meng W, Lim SK, Sze SK."
Journal name Mol Cell Proteomics
Publication year 2010
Sample Squamous carcinoma cells
Sample name Squamous carcinoma cell (A431)
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 217
MISEV standards
EM
Biophysical techniques
TSG101|CD81|CD9|CD63
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors "Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for EXOSC3
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 EIF4G3 8672
Co-fractionation Homo sapiens
2 HECTD1 25831
Affinity Capture-MS Homo sapiens
3 ZCCHC8 55596
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
4 EXOSC10 5394
Co-fractionation Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
5 EXOSC6 118460
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
6 UBE2H 7328
Affinity Capture-MS Homo sapiens
7 EXOSC7 23016
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
8 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
9 GIGYF2 26058
Affinity Capture-MS Homo sapiens
10 MPHOSPH6 10200
Co-fractionation Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
11 SIRT6  
Affinity Capture-MS Homo sapiens
12 COL4A3BP 10087
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
13 HDGF 3068
Affinity Capture-MS Homo sapiens
14 HBS1L 10767
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
15 DIS3 22894
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
16 KIF14 9928
Affinity Capture-MS Homo sapiens
17 EXOSC9 5393
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
18 TPT1 7178
Affinity Capture-MS Homo sapiens
19 MNDA 4332
Affinity Capture-MS Homo sapiens
20 CDK5RAP1  
Two-hybrid Homo sapiens
21 OSTM1 28962
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
22 USP36  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
23 DIS3L  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
24 THOP1 7064
Affinity Capture-MS Homo sapiens
25 RNFT1  
Affinity Capture-MS Homo sapiens
26 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
27 DCAF13 25879
Affinity Capture-MS Homo sapiens
28 HSP90AB1 3326
Co-fractionation Homo sapiens
29 EGFR 1956
Affinity Capture-MS Homo sapiens
Negative Genetic Homo sapiens
30 EXOSC5 56915
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
31 NPM1 4869
Affinity Capture-MS Homo sapiens
32 G3BP2 9908
Affinity Capture-MS Homo sapiens
33 DRG1 4733
Affinity Capture-MS Homo sapiens
34 EIF4E2  
Affinity Capture-MS Homo sapiens
35 RBM7  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
36 NXF1 10482
Affinity Capture-RNA Homo sapiens
37 CLTCL1 8218
Affinity Capture-MS Homo sapiens
38 WDR43 23160
Affinity Capture-MS Homo sapiens
39 UFL1 23376
Affinity Capture-MS Homo sapiens
40 HIST1H2BG 8339
Proximity Label-MS Homo sapiens
41 POLA1  
Co-fractionation Homo sapiens
42 ATP5D 513
Two-hybrid Homo sapiens
43 EXOSC2 23404
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
44 SKIV2L2 23517
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
45 EXOSC3 51010
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
46 CIT 11113
Affinity Capture-MS Homo sapiens
47 ZNF131  
Affinity Capture-MS Homo sapiens
48 TSKS  
Affinity Capture-MS Homo sapiens
49 WDR75  
Affinity Capture-MS Homo sapiens
50 FBXW7  
Affinity Capture-MS Homo sapiens
51 C1D  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
52 P4HB 5034
Co-fractionation Homo sapiens
53 MARCH8  
Affinity Capture-MS Homo sapiens
54 DDRGK1 65992
Affinity Capture-MS Homo sapiens
55 GNB2L1 10399
Affinity Capture-MS Homo sapiens
56 FBL 2091
Co-fractionation Homo sapiens
57 RPA2 6118
Proximity Label-MS Homo sapiens
58 RPA3 6119
Proximity Label-MS Homo sapiens
59 EXOSC1 51013
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
60 MLLT3 4300
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
61 KRAS 3845
Negative Genetic Homo sapiens
62 APP 351
Reconstituted Complex Homo sapiens
63 Exosc1  
Affinity Capture-MS Mus musculus
64 EXOSC4 54512
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
65 EXOSC8  
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
66 TSR2  
Two-hybrid Homo sapiens
67 SRP68 6730
Affinity Capture-MS Homo sapiens
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