Gene ontology annotations for ATP5D
Experiment description of studies that identified ATP5D in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
6
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
7
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
8
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
9
Experiment ID
234
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|HSC70|GAPDH
Enriched markers
✔
HSP90B1
Negative markers
✔
qNano
Particle analysis
Identified molecule
mRNA
Identification method
RNA Sequencing
PubMed ID
26054723
Organism
Homo sapiens
Experiment description
Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors
"He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name
Carcinogenesis
Publication year
2015
Sample
Hepatocellular carcinoma cells
Sample name
HKCI-C3
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Sucrose density gradient
Flotation density
1.13-1.19 g/mL
Molecules identified in the study
Protein RNA
Methods used in the study
Western blotting Mass spectrometry RT-PCR RNA Sequencing
10
Experiment ID
236
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|HSC70|GAPDH
Enriched markers
✔
HSP90B1
Negative markers
✔
qNano
Particle analysis
Identified molecule
mRNA
Identification method
RNA Sequencing
PubMed ID
26054723
Organism
Homo sapiens
Experiment description
Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors
"He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name
Carcinogenesis
Publication year
2015
Sample
Hepatocellular carcinoma cells
Sample name
MHCC97L
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation Sucrose density gradient
Flotation density
1.13-1.19 g/mL
Molecules identified in the study
Protein RNA
Methods used in the study
Western blotting Mass spectrometry RT-PCR RNA Sequencing
11
Experiment ID
834
MISEV standards
✔
EM
Biophysical techniques
✔
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35333565
Organism
Homo sapiens
Experiment description
LAMP2A regulates the loading of proteins into exosomes
Authors
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name
Sci Adv
Publication year
2022
Sample
Retinal pigment epithelial cells
Sample name
ARPE-19
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
12
Experiment ID
835
MISEV standards
✔
EM
Biophysical techniques
✔
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35333565
Organism
Homo sapiens
Experiment description
LAMP2A regulates the loading of proteins into exosomes
Authors
"Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name
Sci Adv
Publication year
2022
Sample
Retinal pigment epithelial cells
Sample name
ARPE-19
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectrometry
13
Experiment ID
191
MISEV standards
✘
Biophysical techniques
✔
Alix|CD81|CD9
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
20124223
Organism
Homo sapiens
Experiment description
Hypoxic tumor cell modulates its microenvironment to enhance angiogenic and metastatic potential by secretion of proteins and exosomes.
Authors
"Park JE, Tan HS, Datta A, Lai RC, Zhang H, Meng W, Lim SK, Sze SK."
Journal name
Mol Cell Proteomics
Publication year
2010
Sample
Squamous carcinoma cells
Sample name
Squamous carcinoma cell (A431)
Isolation/purification methods
Differential centrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for ATP5D
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
TAS2R19
Affinity Capture-MS
Homo sapiens
2
SLIRP
81892
Proximity Label-MS
Homo sapiens
3
MTCH1
23787
Co-fractionation
Homo sapiens
4
RIN3
Affinity Capture-MS
Homo sapiens
5
RIT1
6016
Negative Genetic
Homo sapiens
6
FRMD3
Affinity Capture-MS
Homo sapiens
7
TRUB2
Proximity Label-MS
Homo sapiens
8
MTG2
Proximity Label-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
9
KIF20A
10112
Affinity Capture-MS
Homo sapiens
10
TRIM55
Two-hybrid
Homo sapiens
11
RPUSD4
84881
Proximity Label-MS
Homo sapiens
12
GFM2
84340
Proximity Label-MS
Homo sapiens
13
CCDC90B
Proximity Label-MS
Homo sapiens
14
ATP5L
10632
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
15
Kcnk1
Affinity Capture-MS
Mus musculus
16
PMPCA
23203
Proximity Label-MS
Homo sapiens
17
COPB2
9276
Affinity Capture-MS
Homo sapiens
18
HARS2
23438
Affinity Capture-MS
Homo sapiens
19
YARS2
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
20
HINT2
84681
Proximity Label-MS
Homo sapiens
21
DDOST
1650
Co-fractionation
Homo sapiens
22
ATP8
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
23
ATP5O
539
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
24
KRAS
3845
Negative Genetic
Homo sapiens
25
ATP6V0D1
9114
Co-fractionation
Homo sapiens
26
ATP5H
10476
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
27
SNX27
81609
Affinity Capture-MS
Homo sapiens
28
PMPCB
9512
Proximity Label-MS
Homo sapiens
29
FASTKD2
Proximity Label-MS
Homo sapiens
30
MTERF3
Proximity Label-MS
Homo sapiens
31
PRNP
5621
Affinity Capture-MS
Homo sapiens
32
MDH2
4191
Proximity Label-MS
Homo sapiens
33
E2F4
Affinity Capture-MS
Homo sapiens
34
ATP5A1
498
Co-fractionation
Homo sapiens
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
35
C6orf203
Proximity Label-MS
Homo sapiens
36
HIST1H4A
8359
Affinity Capture-MS
Homo sapiens
37
FASTKD5
Proximity Label-MS
Homo sapiens
38
TUFM
7284
Proximity Label-MS
Homo sapiens
39
CERS2
29956
Affinity Capture-MS
Homo sapiens
40
Atp5a1
11946
Affinity Capture-MS
Mus musculus
41
TBC1D32
221322
Proximity Label-MS
Homo sapiens
42
USMG5
84833
Cross-Linking-MS (XL-MS)
Homo sapiens
43
GFM1
85476
Proximity Label-MS
Homo sapiens
44
MRPL11
65003
Proximity Label-MS
Homo sapiens
45
TMEM70
Proximity Label-MS
Homo sapiens
46
ATP5B
506
Co-fractionation
Homo sapiens
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
47
TRIM63
Two-hybrid
Homo sapiens
48
COX4I1
1327
Co-fractionation
Homo sapiens
49
CPT2
1376
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
50
NDUFB5
4711
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
51
VIPR2
Affinity Capture-MS
Homo sapiens
52
ACKR3
57007
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
53
MRRF
Proximity Label-MS
Homo sapiens
54
MTIF2
4528
Proximity Label-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
55
ATP5I
521
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
56
PNPT1
87178
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
57
NR3C1
2908
Proximity Label-MS
Homo sapiens
58
MTIF3
Proximity Label-MS
Homo sapiens
59
RTN4IP1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
60
ACTBL2
345651
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
61
ATP5F1
515
Co-fractionation
Homo sapiens
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
62
RMND1
55005
Proximity Label-MS
Homo sapiens
63
TOP3A
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
64
C17orf80
55028
Affinity Capture-MS
Homo sapiens
65
BLK
640
Affinity Capture-MS
Homo sapiens
66
CDK2
1017
Affinity Capture-MS
Homo sapiens
67
ATP5J2
9551
Co-fractionation
Homo sapiens
68
MYC
Dosage Lethality
Homo sapiens
69
ATP5E
514
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Cross-Linking-MS (XL-MS)
Homo sapiens
70
EXOSC3
51010
Two-hybrid
Homo sapiens
71
ACAD9
28976
Proximity Label-MS
Homo sapiens
72
VDAC1
7416
Co-fractionation
Homo sapiens
73
ATP5C1
509
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
74
PUS1
80324
Affinity Capture-MS
Homo sapiens
75
METTL15
Proximity Label-MS
Homo sapiens
76
SIRT3
Affinity Capture-MS
Homo sapiens
77
MCUR1
63933
Proximity Label-MS
Homo sapiens
78
NIPSNAP3A
Affinity Capture-MS
Homo sapiens
79
DNAJC28
Proximity Label-MS
Homo sapiens
80
CS
1431
Proximity Label-MS
Homo sapiens
81
PLEKHA4
57664
Affinity Capture-MS
Homo sapiens
82
TSFM
10102
Proximity Label-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
83
AUH
549
Proximity Label-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
84
ATP5J
522
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
85
GTPBP6
Affinity Capture-MS
Homo sapiens
86
LARS2
23395
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
87
ATP5G3
518
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
88
COX5A
9377
Co-fractionation
Homo sapiens
89
C21orf33
Proximity Label-MS
Homo sapiens
90
SSBP1
6742
Proximity Label-MS
Homo sapiens
91
VDAC2
7417
Co-fractionation
Homo sapiens
92
ATP6V0C
527
Affinity Capture-MS
Homo sapiens
93
TBRG4
9238
Proximity Label-MS
Homo sapiens
94
SLC27A3
11000
Affinity Capture-MS
Homo sapiens
95
FAM172A
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
96
RPUSD3
Proximity Label-MS
Homo sapiens
97
DHRS4
10901
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
98
GRSF1
2926
Proximity Label-MS
Homo sapiens
99
C1QBP
708
Proximity Label-MS
Homo sapiens
100
SERBP1
26135
Affinity Capture-MS
Homo sapiens
101
SGCZ
Affinity Capture-MS
Homo sapiens
102
HTR1B
Affinity Capture-MS
Homo sapiens
103
METTL17
Proximity Label-MS
Homo sapiens
104
VDAC3
7419
Co-fractionation
Homo sapiens
View the network
image/svg+xml
Pathways in which ATP5D is involved