Gene ontology annotations for CSTF3
Experiment description of studies that identified CSTF3 in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
497
MISEV standards
✘
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35931686
Organism
Homo sapiens
Experiment description
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name
Cell Death Dis
Publication year
2022
Sample
Chondrocytes
Sample name
T/C-28a2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
6
Experiment ID
498
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35931686
Organism
Homo sapiens
Experiment description
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name
Cell Death Dis
Publication year
2022
Sample
Chondrocytes
Sample name
T/C-28a2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
7
Experiment ID
488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Homo sapiens
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Mesenchymal stem cells
Sample name
UCMSC
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
8
Experiment ID
224
MISEV standards
✔
EM|AFM
Biophysical techniques
✔
Alix|TSG101|CD63|CD81
Enriched markers
✔
GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
25944692
Organism
Homo sapiens
Experiment description
Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes
Authors
"Keerthikumar S, Gangoda L, Liem M, Fonseka P, Atukorala I, Ozcitti C, Mechler A, Adda CG, Ang CS, Mathivanan S"
Journal name
Oncotarget
Publication year
2015
Sample
Neuroblastoma cells
Sample name
SH-SY5Y
Isolation/purification methods
Differential centrifugation Ultracentrifugation OptiPrep density gradient
Flotation density
1.10 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry Western blotting
9
Experiment ID
211
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
cytochrome c|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
IGROV1
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
10
Experiment ID
212
MISEV standards
✔
CEM
Biophysical techniques
✔
TSG101|Alix|EpCAM|TFRC
Enriched markers
✔
Cytochrome C|GOLGA2
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23333927
Organism
Homo sapiens
Experiment description
Characterization and proteomic analysis of ovarian cancer-derived exosomes.
Authors
"Liang B, Peng P, Chen S, Li L, Zhang M, Cao D, Yang J, Li H, Gui T, Li X, Shen K."
Journal name
J Proteomics
Publication year
2013
Sample
Ovarian cancer cells
Sample name
OVCAR-3
Isolation/purification methods
Differential centrifugation Ultracentrifugation Sucrose density gradient
Flotation density
1.09-1.15 g/mL
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
11
Experiment ID
217
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|CD81|CD9|CD63
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23844026
Organism
Homo sapiens
Experiment description
Characterization of human thymic exosomes.
Authors
"Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O."
Journal name
PLoS One
Publication year
2013
Sample
Thymus
Sample name
Normal-Thymus
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
Protein-protein interactions for CSTF3
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
MACROD1
28992
Affinity Capture-MS
Homo sapiens
2
ATG16L1
55054
Affinity Capture-MS
Homo sapiens
3
SCARNA22
Affinity Capture-RNA
Homo sapiens
4
KLHL20
Affinity Capture-MS
Homo sapiens
5
RBBP6
5930
Affinity Capture-Western
Homo sapiens
6
PLEKHA4
57664
Affinity Capture-MS
Homo sapiens
7
AHSA1
10598
Co-fractionation
Homo sapiens
8
CPSF1
29894
Reconstituted Complex
Homo sapiens
9
FEM1A
Affinity Capture-MS
Homo sapiens
10
CSTF1
1477
Co-fractionation
Homo sapiens
Affinity Capture-Western
Homo sapiens
11
Myh9
17886
Affinity Capture-MS
Mus musculus
12
HDDC3
Affinity Capture-MS
Homo sapiens
13
CDC73
Affinity Capture-Western
Homo sapiens
14
CPSF6
11052
Affinity Capture-MS
Homo sapiens
15
KIF14
9928
Affinity Capture-MS
Homo sapiens
16
CSTF2T
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
Co-fractionation
Homo sapiens
17
XPO1
7514
Co-fractionation
Homo sapiens
18
CEP170P1
Affinity Capture-MS
Homo sapiens
19
SSU72
29101
Affinity Capture-MS
Homo sapiens
20
WWOX
51741
Affinity Capture-MS
Homo sapiens
21
RIT1
6016
Negative Genetic
Homo sapiens
22
UNK
Affinity Capture-RNA
Homo sapiens
23
PAPOLB
Co-fractionation
Homo sapiens
24
DLD
1738
Affinity Capture-MS
Homo sapiens
25
SYMPK
8189
Affinity Capture-MS
Homo sapiens
26
P4HA1
5033
Affinity Capture-MS
Homo sapiens
27
MFAP4
4239
Affinity Capture-MS
Homo sapiens
28
CUL3
8452
Affinity Capture-MS
Homo sapiens
29
BAG2
9532
Affinity Capture-MS
Homo sapiens
30
MECP2
4204
Affinity Capture-MS
Homo sapiens
31
CYP1A1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
32
PPIA
5478
Cross-Linking-MS (XL-MS)
Homo sapiens
33
VHL
Affinity Capture-MS
Homo sapiens
34
HSPA8
3312
Affinity Capture-MS
Homo sapiens
35
PARK2
Affinity Capture-MS
Homo sapiens
36
HNRNPA1
3178
Affinity Capture-MS
Homo sapiens
37
CSTF2
1478
Reconstituted Complex
Homo sapiens
Affinity Capture-MS
Homo sapiens
Co-fractionation
Homo sapiens
Co-fractionation
Homo sapiens
38
POLR2A
5430
Affinity Capture-Western
Homo sapiens
Reconstituted Complex
Homo sapiens
Reconstituted Complex
Homo sapiens
39
WIF1
11197
Affinity Capture-MS
Homo sapiens
40
TIMMDC1
Affinity Capture-MS
Homo sapiens
41
C9orf78
51759
Affinity Capture-MS
Homo sapiens
42
RPA3
6119
Proximity Label-MS
Homo sapiens
43
MUT
4594
Co-fractionation
Homo sapiens
44
CCNL2
81669
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
45
RNPS1
10921
Affinity Capture-MS
Homo sapiens
46
TOP1
7150
Affinity Capture-MS
Homo sapiens
47
SYT6
Affinity Capture-MS
Homo sapiens
48
HECW2
Affinity Capture-MS
Homo sapiens
49
GTF2E2
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
50
PRPH2
5961
Affinity Capture-MS
Homo sapiens
51
NTRK1
4914
Affinity Capture-MS
Homo sapiens
52
EGFR
1956
Affinity Capture-MS
Homo sapiens
53
PABPC1
26986
Co-fractionation
Homo sapiens
54
GAPDH
2597
Co-fractionation
Homo sapiens
55
CIT
11113
Affinity Capture-MS
Homo sapiens
56
RBM14
10432
Affinity Capture-MS
Homo sapiens
57
FIP1L1
81608
Affinity Capture-MS
Homo sapiens
58
SERBP1
26135
Affinity Capture-MS
Homo sapiens
59
SNW1
22938
Affinity Capture-MS
Homo sapiens
60
CUL7
9820
Affinity Capture-MS
Homo sapiens
61
SLBP
Affinity Capture-Western
Homo sapiens
62
TGM1
7051
Affinity Capture-MS
Homo sapiens
63
BMP1
649
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
64
PABPC3
5042
Co-fractionation
Homo sapiens
65
PAPOLA
10914
Co-fractionation
Homo sapiens
66
ITGB4
3691
Co-fractionation
Homo sapiens
67
CEBPA
Protein-peptide
Homo sapiens
68
CPSF3
51692
Affinity Capture-MS
Homo sapiens
69
C1QL4
Affinity Capture-MS
Homo sapiens
70
FGFR1OP
Affinity Capture-MS
Homo sapiens
71
EP300
2033
Affinity Capture-MS
Homo sapiens
72
CDC5L
988
Affinity Capture-MS
Homo sapiens
73
CD46
4179
Co-fractionation
Homo sapiens
74
HSPA2
3306
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which CSTF3 is involved