Gene description for RBBP6
Gene name retinoblastoma binding protein 6
Gene symbol RBBP6
Other names/aliases MY038
P2P-R
PACT
RBQ-1
SNAMA
Species Homo sapiens
 Database cross references - RBBP6
ExoCarta ExoCarta_5930
Entrez Gene 5930
HGNC 9889
MIM 600938
UniProt Q7Z6E9  
 RBBP6 identified in exosomes derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
Neuroblastoma cells 25944692    
 Gene ontology annotations for RBBP6
Molecular Function
    poly(A) RNA binding GO:0044822 IDA
    ligase activity GO:0016874 IEA
    ubiquitin-protein transferase activity GO:0004842 IDA
    zinc ion binding GO:0008270 IEA
    protein binding GO:0005515 IPI
Biological Process
    somite development GO:0061053 IEA
    protein ubiquitination involved in ubiquitin-dependent protein catabolic process GO:0042787 IDA
    embryonic organ development GO:0048568 IEA
    multicellular organism growth GO:0035264 IEA
    in utero embryonic development GO:0001701 IEA
Subcellular Localization
    microtubule organizing center GO:0005815 IEA
    nucleoplasm GO:0005654 IDA
    cytoplasm GO:0005737 IEA
    nucleolus GO:0005730 IEA
    chromosome GO:0005694 IEA
 Experiment description of studies that identified RBBP6 in exosomes
1
Experiment ID 235
ISEV standards
EM
EV Biophysical techniques
TSG101|Alix|HSC70|GAPDH
EV Cytosolic markers
EV Membrane markers
HSP90B1
EV Negative markers
qNano
EV Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
2
Experiment ID 224
ISEV standards
EM|AFM
EV Biophysical techniques
Alix|TSG101
EV Cytosolic markers
CD63|CD81
EV Membrane markers
GOLGA2
EV Negative markers
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25944692    
Organism Homo sapiens
Experiment description Proteogenomic analysis reveals exosomes are more oncogenic than ectosomes
Authors Keerthikumar S, Gangoda L, Liem M, Fonseka P, Atukorala I, Ozcitti C, Mechler A, Adda CG, Ang CS, Mathivanan S
Journal name Oncotarget
Publication year 2015
Sample Neuroblastoma cells
Sample name SH-SY5Y
Isolation/purification methods Differential centrifugation
Ultracentrifugation
OptiPrep density gradient
Flotation density 1.10 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
 Protein-protein interactions for RBBP6
  Protein Interactor ExoCarta ID Identification method PubMed Species
No interactions are found.
 Pathways in which RBBP6 is involved
No pathways found





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