Gene description for UFM1
Gene name ubiquitin-fold modifier 1
Gene symbol UFM1
Other names/aliases BM-002
C13orf20
Species Homo sapiens
 Database cross references - UFM1
ExoCarta ExoCarta_51569
Vesiclepedia VP_51569
Entrez Gene 51569
HGNC 20597
MIM 610553
UniProt P61960  
 UFM1 identified in exosomes derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Mesenchymal stem cells 36408942    
 Gene ontology annotations for UFM1
Molecular Function
    protein binding GO:0005515 IPI
Biological Process
    brain development GO:0007420 IMP
    regulation of intracellular estrogen receptor signaling pathway GO:0033146 IDA
    response to endoplasmic reticulum stress GO:0034976 IBA
    response to endoplasmic reticulum stress GO:0034976 IDA
    response to endoplasmic reticulum stress GO:0034976 IMP
    negative regulation of protein import into nucleus GO:0042308 IMP
    negative regulation of apoptotic process GO:0043066 ISS
    reticulophagy GO:0061709 IBA
    reticulophagy GO:0061709 IMP
    protein ufmylation GO:0071569 IDA
    protein ufmylation GO:0071569 IMP
    protein K69-linked ufmylation GO:1990592 IDA
Subcellular Localization
    nucleus GO:0005634 IBA
    nucleus GO:0005634 IDA
    cytoplasm GO:0005737 IBA
    cytoplasm GO:0005737 IDA
    endoplasmic reticulum GO:0005783 ISS
 Experiment description of studies that identified UFM1 in exosomes
1
Experiment ID 489
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
5
Experiment ID 488
MISEV standards
EM
Biophysical techniques
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
CANX
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Homo sapiens
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Mesenchymal stem cells
Sample name UCMSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
 Protein-protein interactions for UFM1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 PSAT1 29968
Co-fractionation Homo sapiens
2 UBE2H 7328
Affinity Capture-MS Homo sapiens
3 ACTR2 10097
Co-fractionation Homo sapiens
4 NPLOC4 55666
Co-fractionation Homo sapiens
5 USP9X 8239
Co-fractionation Homo sapiens
6 SAR1B 51128
Affinity Capture-MS Homo sapiens
7 PKM 5315
Co-fractionation Homo sapiens
8 S100A6 6277
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
9 ZPR1 8882
Co-fractionation Homo sapiens
10 PAICS 10606
Co-fractionation Homo sapiens
11 EFTUD1 79631
Co-fractionation Homo sapiens
12 CFL1 1072
Co-fractionation Homo sapiens
13 VASP 7408
Affinity Capture-MS Homo sapiens
14 ARHGDIA 396
Two-hybrid Homo sapiens
15 GRHPR 9380
Co-fractionation Homo sapiens
16 CAPG 822
Co-fractionation Homo sapiens
17 NDRG1 10397
Co-fractionation Homo sapiens
18 BCAT2 587
Co-fractionation Homo sapiens
19 CSRP1 1465
Co-fractionation Homo sapiens
20 MRPL12 6182
Co-fractionation Homo sapiens
21 HIBCH 26275
Co-fractionation Homo sapiens
22 KCTD21 283219
Two-hybrid Homo sapiens
23 PSMC6 5706
Co-fractionation Homo sapiens
24 LPP 4026
Co-fractionation Homo sapiens
25 TAGLN3 29114
Co-fractionation Homo sapiens
26 BLVRB 645
Co-fractionation Homo sapiens
27 TIAL1 7073
Co-fractionation Homo sapiens
28 UBE2W  
Two-hybrid Homo sapiens
29 SOD1 6647
Co-fractionation Homo sapiens
30 RPL19 6143
Affinity Capture-MS Homo sapiens
31 GSK3B 2932
Two-hybrid Homo sapiens
32 TRAP1 10131
Co-fractionation Homo sapiens
33 TPT1 7178
Affinity Capture-MS Homo sapiens
34 MDH2 4191
Co-fractionation Homo sapiens
35 UBE2E3 10477
Two-hybrid Homo sapiens
36 SRP9 6726
Affinity Capture-MS Homo sapiens
37 DLD 1738
Affinity Capture-MS Homo sapiens
38 UBE4B 10277
Co-fractionation Homo sapiens
39 HMGCS1 3157
Co-fractionation Homo sapiens
40 UBE2D4  
Two-hybrid Homo sapiens
41 PANK4 55229
Co-fractionation Homo sapiens
42 DIABLO 56616
Two-hybrid Homo sapiens
43 RPL5 6125
Affinity Capture-MS Homo sapiens
44 YAP1 10413
Co-fractionation Homo sapiens
45 SPR 6697
Co-fractionation Homo sapiens
46 RFK 55312
Co-fractionation Homo sapiens
47 PPA2 27068
Co-fractionation Homo sapiens
48 UBE2D3 7323
Two-hybrid Homo sapiens
49 TTLL12 23170
Co-fractionation Homo sapiens
50 RPS6KA6 27330
Two-hybrid Homo sapiens
51 RPL11 6135
Affinity Capture-MS Homo sapiens
52 RBBP6 5930
Co-fractionation Homo sapiens
53 TOMM34 10953
Cross-Linking-MS (XL-MS) Homo sapiens
54 UFC1 51506
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
55 AHCYL1 10768
Co-fractionation Homo sapiens
56 PITRM1 10531
Affinity Capture-MS Homo sapiens
57 RC3H2  
Affinity Capture-MS Homo sapiens
58 SMARCA5 8467
Cross-Linking-MS (XL-MS) Homo sapiens
59 ARPC3 10094
Affinity Capture-MS Homo sapiens
60 UBXN7 26043
Co-fractionation Homo sapiens
61 UBE2L3 7332
Co-fractionation Homo sapiens
62 MTAP 4507
Co-fractionation Homo sapiens
63 UBE2E1  
Two-hybrid Homo sapiens
64 OSGEP 55644
Co-fractionation Homo sapiens
65 ZFYVE19 84936
Co-fractionation Homo sapiens
66 RCN1 5954
Co-fractionation Homo sapiens
67 G6PD 2539
Co-fractionation Homo sapiens
68 UBE2D2 7322
Two-hybrid Homo sapiens
69 KIF1BP 26128
Co-fractionation Homo sapiens
70 PSPC1 55269
Affinity Capture-MS Homo sapiens
71 MSI2 124540
Co-fractionation Homo sapiens
72 ESD 2098
Co-fractionation Homo sapiens
73 TP53RK 112858
Co-fractionation Homo sapiens
74 TSC22D2 9819
Two-hybrid Homo sapiens
75 DDRGK1 65992
Affinity Capture-MS Homo sapiens
76 VDAC1 7416
Co-fractionation Homo sapiens
77 PSMB1 5689
Co-fractionation Homo sapiens
78 UBXN1 51035
Co-fractionation Homo sapiens
79 RPS16 6217
Affinity Capture-MS Homo sapiens
80 UBE2D1 7321
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
81 C2orf71  
Affinity Capture-MS Homo sapiens
82 HSPE1 3336
Co-fractionation Homo sapiens
83 TRIP6 7205
Co-fractionation Homo sapiens
84 TTC1 7265
Co-fractionation Homo sapiens
85 UBA5 79876
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
86 TP53 7157
Affinity Capture-MS Homo sapiens
87 USP34 9736
Co-fractionation Homo sapiens
88 CRIP1 1396
Co-fractionation Homo sapiens
89 INCA1  
Two-hybrid Homo sapiens
90 UBA52 7311
Co-fractionation Homo sapiens
91 ELAVL1 1994
Affinity Capture-RNA Homo sapiens
92 TKT 7086
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
93 ARHGDIB 397
Two-hybrid Homo sapiens
94 UFL1 23376
Affinity Capture-MS Homo sapiens
95 MIF 4282
Co-fractionation Homo sapiens
96 UPF1 5976
Affinity Capture-MS Homo sapiens
97 GOT1 2805
Co-fractionation Homo sapiens
98 CDK5RAP3 80279
Affinity Capture-MS Homo sapiens
99 KRAS 3845
Negative Genetic Homo sapiens
100 Ufl1  
Affinity Capture-MS Mus musculus
101 RAD23B 5887
Co-fractionation Homo sapiens
102 UBE2V2 7336
Co-fractionation Homo sapiens
103 RANGAP1 5905
Co-fractionation Homo sapiens
View the network image/svg+xml
 Pathways in which UFM1 is involved
No pathways found





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