Gene description for NUDCD3
Gene name NudC domain containing 3
Gene symbol NUDCD3
Other names/aliases NudCL
Species Homo sapiens
 Database cross references - NUDCD3
ExoCarta ExoCarta_23386
Vesiclepedia VP_23386
Entrez Gene 23386
HGNC 22208
MIM 610296
UniProt Q8IVD9  
 NUDCD3 identified in exosomes derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
 Gene ontology annotations for NUDCD3
Molecular Function
    protein binding GO:0005515 IPI
    unfolded protein binding GO:0051082 IBA
Biological Process
    protein folding GO:0006457 IBA
    cilium assembly GO:0060271 IMP
    protein localization to pericentriolar material GO:1905793 IMP
Subcellular Localization
    cytoplasm GO:0005737 IBA
    cytoplasmic dynein complex GO:0005868 IDA
 Experiment description of studies that identified NUDCD3 in exosomes
1
Experiment ID 489
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
EM
Biophysical techniques
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
Canx
Negative markers
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
 Protein-protein interactions for NUDCD3
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 KLHL9 55958
Affinity Capture-MS Homo sapiens
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
2 PTPRF 5792
Affinity Capture-MS Homo sapiens
3 ACTR2 10097
Proximity Label-MS Homo sapiens
4 KLHL28  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
5 MTCH1 23787
Proximity Label-MS Homo sapiens
6 PRPF8 10594
Proximity Label-MS Homo sapiens
7 DYNC1I2 1781
Proximity Label-MS Homo sapiens
8 KLHL23  
Affinity Capture-MS Homo sapiens
9 KBTBD6  
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
10 ACTR3 10096
Proximity Label-MS Homo sapiens
11 KLHDC10 23008
Affinity Capture-MS Homo sapiens
12 ACTR1A 10121
Proximity Label-MS Homo sapiens
13 HCFC2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
14 FAM136A 84908
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
15 PSMA8 143471
Cross-Linking-MS (XL-MS) Homo sapiens
16 KLHL20  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
17 PKN3 29941
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
18 CCNDBP1 23582
Two-hybrid Homo sapiens
19 SNX4 8723
Co-fractionation Homo sapiens
20 LAMTOR1 55004
Proximity Label-MS Homo sapiens
21 PRNP 5621
Affinity Capture-MS Homo sapiens
22 LCMT2 9836
Affinity Capture-MS Homo sapiens
23 LMAN1 3998
Proximity Label-MS Homo sapiens
24 ANAPC2 29882
Proximity Label-MS Homo sapiens
25 PXMP2  
Proximity Label-MS Homo sapiens
26 MTCH2 23788
Proximity Label-MS Homo sapiens
27 UBE4B 10277
Co-fractionation Homo sapiens
28 ZNF444  
Affinity Capture-MS Homo sapiens
29 KLHL3  
Affinity Capture-MS Homo sapiens
30 KLHDC2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
31 PPEF2 5470
Proximity Label-MS Homo sapiens
32 UBE2I 7329
Two-hybrid Homo sapiens
33 CARM1 10498
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
34 DIRAS3  
Proximity Label-MS Homo sapiens
35 DNAJA1 3301
Proximity Label-MS Homo sapiens
36 CLEC11A 6320
Affinity Capture-MS Homo sapiens
37 KLHL2 11275
Affinity Capture-MS Homo sapiens
38 DHFRL1  
Proximity Label-MS Homo sapiens
39 STIL  
Proximity Label-MS Homo sapiens
40 ENC1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
41 KLHL14 57565
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
42 KRTAP10-7  
Two-hybrid Homo sapiens
43 PHLPP1  
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
44 SAMM50 25813
Proximity Label-MS Homo sapiens
45 GAN 8139
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
46 TECPR2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
47 PHOSPHO2-KLHL23  
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
48 DNAJC21  
Proximity Label-MS Homo sapiens
49 SLC25A12 8604
Proximity Label-MS Homo sapiens
50 KLHL6  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
51 EIF6 3692
Proximity Label-MS Homo sapiens
52 TPR 7175
Co-fractionation Homo sapiens
53 HCFC1 3054
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
54 RQCD1 9125
Co-fractionation Homo sapiens
55 HSD3B7 80270
Proximity Label-MS Homo sapiens
56 CUL3 8452
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
57 KLHL29  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
58 PTK2 5747
Proximity Label-MS Homo sapiens
59 KRTAP10-3  
Two-hybrid Homo sapiens
60 SNF8 11267
Co-fractionation Homo sapiens
61 KLHL13 90293
Affinity Capture-MS Homo sapiens
62 FKBP5 2289
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
63 DCUN1D1 54165
Affinity Capture-MS Homo sapiens
64 MFN2 9927
Proximity Label-MS Homo sapiens
65 SF3B3 23450
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
66 AKAP1 8165
Proximity Label-MS Homo sapiens
Proximity Label-MS Homo sapiens
67 CXorf57  
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
68 HK2 3099
Co-fractionation Homo sapiens
69 KLHL18  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
70 PEF1 553115
Affinity Capture-MS Homo sapiens
71 KLHL15  
Affinity Capture-MS Homo sapiens
72 SPOP  
Two-hybrid Homo sapiens
73 CCIN  
Affinity Capture-MS Homo sapiens
74 NUP205 23165
Co-fractionation Homo sapiens
75 RAB3GAP2 25782
Co-fractionation Homo sapiens
76 KLHDC3  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
77 KLHL26  
Affinity Capture-MS Homo sapiens
78 LCK 3932
Proximity Label-MS Homo sapiens
79 HSP90AA1 3320
Affinity Capture-MS Homo sapiens
80 SSBP1 6742
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
81 KLHL1  
Affinity Capture-MS Homo sapiens
82 KDM1A 23028
Proximity Label-MS Homo sapiens
83 KLHDC8A  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
84 QRICH1  
Co-fractionation Homo sapiens
85 VWA2 340706
Affinity Capture-MS Homo sapiens
86 SORT1 6272
Affinity Capture-Luminescence Homo sapiens
Affinity Capture-MS Homo sapiens
87 RPUSD3  
Proximity Label-MS Homo sapiens
88 KLHL22 84861
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
89 KBTBD4  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
90 PHF8  
Affinity Capture-MS Homo sapiens
91 NAE1 8883
Co-fractionation Homo sapiens
View the network image/svg+xml
 Pathways in which NUDCD3 is involved
No pathways found





Perform bioinformatics analysis of your extracellular vesicle data set using FunRich, a open access standalone tool. NEW UPDATED VERSION OF FunRich available for download (12/09/2016) from here