Gene description for Nedd4
Gene name neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase
Gene symbol Nedd4
Other names/aliases Nedd4a
Species Rattus norvegicus
 Database cross references - Nedd4
ExoCarta ExoCarta_25489
Vesiclepedia VP_25489
Entrez Gene 25489
UniProt Q62940  
 Nedd4 identified in exosomes derived from the following tissue/cell type
Adipocytes 25998041    
Reticulocytes 21828046    
Reticulocytes 21828046    
Reticulocytes 21828046    
 Gene ontology annotations for Nedd4
Molecular Function
    ubiquitin-protein transferase activity GO:0004842 IDA
    ubiquitin-protein transferase activity GO:0004842 IEA
    protein binding GO:0005515 IPI
    sodium channel inhibitor activity GO:0019871 IBA
    sodium channel inhibitor activity GO:0019871 IEA
    sodium channel inhibitor activity GO:0019871 ISO
    enzyme binding GO:0019899 ISO
    protein domain specific binding GO:0019904 IEA
    protein domain specific binding GO:0019904 ISO
    beta-2 adrenergic receptor binding GO:0031698 IEA
    beta-2 adrenergic receptor binding GO:0031698 ISO
    ionotropic glutamate receptor binding GO:0035255 ISO
    ubiquitin binding GO:0043130 IEA
    ubiquitin binding GO:0043130 ISO
    phosphoserine residue binding GO:0050815 ISO
    phosphothreonine residue binding GO:0050816 ISO
    ubiquitin protein ligase activity GO:0061630 IBA
    ubiquitin protein ligase activity GO:0061630 IEA
    ubiquitin protein ligase activity GO:0061630 ISO
    ubiquitin protein ligase activity GO:0061630 ISS
    RNA polymerase binding GO:0070063 IEA
    RNA polymerase binding GO:0070063 ISO
    proline-rich region binding GO:0070064 IEA
    proline-rich region binding GO:0070064 ISO
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IEA
    negative regulation of transcription by RNA polymerase II GO:0000122 ISO
    negative regulation of transcription by RNA polymerase II GO:0000122 ISO
    adaptive immune response GO:0002250 ISO
    outflow tract morphogenesis GO:0003151 ISO
    endocardial cushion development GO:0003197 ISO
    ubiquitin-dependent protein catabolic process GO:0006511 IBA
    ubiquitin-dependent protein catabolic process GO:0006511 IEA
    ubiquitin-dependent protein catabolic process GO:0006511 ISO
    ubiquitin-dependent protein catabolic process GO:0006511 ISO
    ubiquitin-dependent protein catabolic process GO:0006511 ISS
    protein monoubiquitination GO:0006513 ISO
    protein targeting to lysosome GO:0006622 IEA
    protein targeting to lysosome GO:0006622 ISO
    sodium ion transport GO:0006814 ISO
    immune response GO:0006955 IEP
    DNA damage response GO:0006974 IEA
    DNA damage response GO:0006974 ISO
    lysosomal transport GO:0007041 ISO
    neuromuscular junction development GO:0007528 IBA
    neuromuscular junction development GO:0007528 ISO
    negative regulation of sodium ion transport GO:0010766 IEA
    negative regulation of sodium ion transport GO:0010766 ISO
    negative regulation of sodium ion transport GO:0010766 ISO
    response to denervation involved in regulation of muscle adaptation GO:0014894 IEP
    protein ubiquitination GO:0016567 IEA
    protein ubiquitination GO:0016567 ISO
    protein ubiquitination GO:0016567 ISO
    protein ubiquitination GO:0016567 ISS
    negative regulation of vascular endothelial growth factor receptor signaling pathway GO:0030948 ISO
    negative regulation of vascular endothelial growth factor receptor signaling pathway GO:0030948 ISS
    neuron projection development GO:0031175 IBA
    neuron projection development GO:0031175 IEA
    neuron projection development GO:0031175 ISO
    receptor internalization GO:0031623 IBA
    receptor internalization GO:0031623 IEA
    receptor internalization GO:0031623 ISO
    receptor catabolic process GO:0032801 IBA
    receptor catabolic process GO:0032801 IEA
    receptor catabolic process GO:0032801 ISO
    cellular response to UV GO:0034644 IEA
    cellular response to UV GO:0034644 ISO
    regulation of monoatomic ion transmembrane transport GO:0034765 IEA
    regulation of monoatomic ion transmembrane transport GO:0034765 ISO
    T cell activation GO:0042110 ISO
    regulation of membrane potential GO:0042391 IEA
    regulation of membrane potential GO:0042391 ISO
    nuclear receptor-mediated glucocorticoid signaling pathway GO:0042921 IEA
    nuclear receptor-mediated glucocorticoid signaling pathway GO:0042921 ISO
    ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway GO:0043162 IEA
    ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway GO:0043162 ISO
    formation of structure involved in a symbiotic process GO:0044111 IEA
    innate immune response GO:0045087 IEA
    innate immune response GO:0045087 ISO
    positive regulation of protein catabolic process GO:0045732 IEA
    positive regulation of protein catabolic process GO:0045732 ISO
    viral budding GO:0046755 IEA
    positive regulation of nucleocytoplasmic transport GO:0046824 IEA
    positive regulation of nucleocytoplasmic transport GO:0046824 ISO
    blood vessel morphogenesis GO:0048514 ISO
    regulation of dendrite morphogenesis GO:0048814 IBA
    regulation of dendrite morphogenesis GO:0048814 IDA
    regulation of dendrite morphogenesis GO:0048814 ISO
    regulation of synapse organization GO:0050807 IBA
    regulation of synapse organization GO:0050807 ISO
    progesterone receptor signaling pathway GO:0050847 IEA
    progesterone receptor signaling pathway GO:0050847 ISO
    establishment of localization in cell GO:0051649 ISO
    positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 IEA
    positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction GO:0051897 ISO
    protein K63-linked ubiquitination GO:0070534 IDA
    regulation of postsynaptic neurotransmitter receptor internalization GO:0099149 IDA
    regulation of postsynaptic neurotransmitter receptor internalization GO:0099149 IEP
    regulation of postsynaptic neurotransmitter receptor internalization GO:0099149 IMP
    regulation of protein catabolic process at postsynapse, modulating synaptic transmission GO:0099576 IDA
    regulation of protein catabolic process at postsynapse, modulating synaptic transmission GO:0099576 IEP
    regulation of protein catabolic process at postsynapse, modulating synaptic transmission GO:0099576 IMP
    regulation protein catabolic process at postsynapse GO:0140252 IDA
    regulation protein catabolic process at postsynapse GO:0140252 IEP
    regulation protein catabolic process at postsynapse GO:0140252 IMP
    regulation of potassium ion transmembrane transporter activity GO:1901016 ISO
    negative regulation of sodium ion transmembrane transporter activity GO:2000650 ISO
Subcellular Localization
    ubiquitin ligase complex GO:0000151 ISO
    chromatin GO:0000785 IEA
    chromatin GO:0000785 ISO
    nucleus GO:0005634 IEA
    nucleus GO:0005634 ISO
    nucleus GO:0005634 ISS
    cytoplasm GO:0005737 IBA
    cytoplasm GO:0005737 ISO
    cytoplasm GO:0005737 ISS
    Golgi apparatus GO:0005794 IEA
    Golgi apparatus GO:0005794 ISO
    cytosol GO:0005829 ISO
    plasma membrane GO:0005886 IEA
    plasma membrane GO:0005886 ISO
    microvillus GO:0005902 IDA
    cell cortex GO:0005938 IEA
    cell cortex GO:0005938 ISO
    membrane GO:0016020 ISO
    protein-containing complex GO:0032991 IEA
    protein-containing complex GO:0032991 ISO
    dendritic spine GO:0043197 IBA
    perinuclear region of cytoplasm GO:0048471 IEA
    perinuclear region of cytoplasm GO:0048471 ISO
    glutamatergic synapse GO:0098978 IDA
    glutamatergic synapse GO:0098978 IMP
    glutamatergic synapse GO:0098978 ISO
    postsynaptic cytosol GO:0099524 ISO
 Experiment description of studies that identified Nedd4 in exosomes
1
Experiment ID 225
MISEV standards
EM
Biophysical techniques
GAPDH|CD63
Enriched markers
Negative markers
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 25998041    
Organism Rattus norvegicus
Experiment description Proteomic Analysis of Extracellular Vesicles Released by Adipocytes of Otsuka Long-Evans Tokushima Fatty (OLETF) Rats.
Authors Lee JE, Moon PG, Lee IK, Baek MC
Journal name Protein J
Publication year 2015
Sample Adipocytes
Sample name Adipocytes
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
Western blotting
2
Experiment ID 94
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D4 Rep 1
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
3
Experiment ID 96
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D2 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.16-1.21 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
4
Experiment ID 98
MISEV standards
EM
Biophysical techniques
TSG101|HSP90|HSC70|MHCI
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry [Orbitrap]
PubMed ID 21828046    
Organism Rattus norvegicus
Experiment description The proteo-lipidic composition of exosomes changes during reticulocyte maturation.
Authors Carayon K, Chaoui K, Ronzier E, Lazar I, Bertrand-Michel J, Roques V, Balor S, Terce F, Lopez A, Salome L, Joly E.
Journal name JBC
Publication year 2011
Sample Reticulocytes
Sample name Reticulocytes - D7 Rep 2
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.25 g/mL
Molecules identified in the study Protein
Lipids
Methods used in the study Mass spectrometry [QSTAR]
Mass spectrometry [Orbitrap]
Western blotting
 Protein-protein interactions for Nedd4
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 ADRBK1 156
Biochemical Activity Homo sapiens
2 TCEAL2  
Reconstituted Complex Homo sapiens
3 HMCES  
Reconstituted Complex Homo sapiens
4 PRKCD 5580
Biochemical Activity Homo sapiens
5 SLC23A2 9962
Biochemical Activity Homo sapiens
6 UBE2M 9040
Reconstituted Complex Homo sapiens
7 Pten  
Affinity Capture-Western Rattus norvegicus
8 SIVA1  
Reconstituted Complex Homo sapiens
9 ADAP2  
Reconstituted Complex Homo sapiens
10 AKT3  
Biochemical Activity Homo sapiens
11 CSNK2A1 1457
Biochemical Activity Homo sapiens
12 ACAN 176
Biochemical Activity Homo sapiens
13 Ywhag 56010
Affinity Capture-Western Rattus norvegicus
14 Kcnq2  
Affinity Capture-Western Rattus norvegicus
15 MAP3K3 4215
Biochemical Activity Homo sapiens
16 BMPR1B 658
Biochemical Activity Homo sapiens
17 Gja1  
Affinity Capture-Western Rattus norvegicus
Reconstituted Complex Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
Co-crystal Structure Rattus norvegicus
Reconstituted Complex Rattus norvegicus
18 Ywhaq 25577
Affinity Capture-Western Rattus norvegicus
19 NHP2 55651
Reconstituted Complex Homo sapiens
20 WBP2 23558
Biochemical Activity Homo sapiens
21 NUDT16L1 84309
Reconstituted Complex Homo sapiens
22 MAP2 4133
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
23 ZADH2 284273
Reconstituted Complex Homo sapiens
24 TRIM41 90933
Reconstituted Complex Homo sapiens
25 Scnn1a  
Two-hybrid Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
26 Scnn1b  
Two-hybrid Rattus norvegicus
Reconstituted Complex Rattus norvegicus
Co-crystal Structure Rattus norvegicus
Reconstituted Complex Rattus norvegicus
27 TCP10L  
Reconstituted Complex Homo sapiens
28 Slc22a6  
Affinity Capture-Western Rattus norvegicus
29 MAPK12  
Biochemical Activity Homo sapiens
30 CDK5 1020
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
31 KLC4 89953
Biochemical Activity Homo sapiens
32 DYT10  
Biochemical Activity Homo sapiens
33 TEC 7006
Biochemical Activity Homo sapiens
34 BRAF  
Biochemical Activity Homo sapiens
35 MAPKAPK3 7867
Biochemical Activity Homo sapiens
36 RGS3 5998
Biochemical Activity Homo sapiens
37 FLT1 2321
Biochemical Activity Homo sapiens
38 FYN 2534
Biochemical Activity Homo sapiens
39 PPARD  
Reconstituted Complex Homo sapiens
40 ANXA9  
Biochemical Activity Homo sapiens
41 DDX54 79039
Reconstituted Complex Homo sapiens
42 BTK 695
Biochemical Activity Homo sapiens
43 Ndfip1  
Affinity Capture-Western Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
44 C7orf50 84310
Reconstituted Complex Homo sapiens
45 FGF21  
Reconstituted Complex Homo sapiens
46 Ywhah 25576
Affinity Capture-Western Rattus norvegicus
47 Irs2  
Affinity Capture-MS Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
48 DNAAF2  
Biochemical Activity Homo sapiens
49 ZAK 51776
Biochemical Activity Homo sapiens
50 POLR3D  
Biochemical Activity Homo sapiens
51 STAC  
Reconstituted Complex Homo sapiens
52 CAMK1D 57118
Biochemical Activity Homo sapiens
53 KCNAB1  
Reconstituted Complex Homo sapiens
54 FGF12  
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
55 PPID 5481
Reconstituted Complex Homo sapiens
56 TAF1B  
Reconstituted Complex Homo sapiens
57 PDGFRA 5156
Biochemical Activity Homo sapiens
58 EGFR 1956
Biochemical Activity Homo sapiens
59 YY1 7528
Biochemical Activity Homo sapiens
60 H1F0 3005
Reconstituted Complex Homo sapiens
61 MAP3K8  
Biochemical Activity Homo sapiens
62 Pi4k2a  
Affinity Capture-MS Mus musculus
63 Scnn1g  
Two-hybrid Rattus norvegicus
Reconstituted Complex Rattus norvegicus
Reconstituted Complex Rattus norvegicus
64 BLK 640
Biochemical Activity Homo sapiens
65 Ywhab 56011
Affinity Capture-Western Rattus norvegicus
66 DIRAS1 148252
Reconstituted Complex Homo sapiens
67 KCNAB2 8514
Reconstituted Complex Homo sapiens
68 MAPKAPK5 8550
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
69 FKBP3 2287
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
70 TCEANC  
Reconstituted Complex Homo sapiens
71 AKT1 207
Biochemical Activity Homo sapiens
72 AQP9  
Biochemical Activity Homo sapiens
73 Grb7  
Affinity Capture-MS Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
74 STK16 8576
Biochemical Activity Homo sapiens
75 NTRK2 4915
Biochemical Activity Homo sapiens
76 FOXJ2  
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
77 PRRG1 5638
Reconstituted Complex Homo sapiens
78 BEAN1 146227
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
79 TIMM10  
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
80 ABL1 25
Biochemical Activity Homo sapiens
81 BMPR1A 657
Reconstituted Complex Homo sapiens
82 MOB3A 126308
Reconstituted Complex Homo sapiens
83 RASL11B  
Reconstituted Complex Homo sapiens
84 UBOX5  
Reconstituted Complex Homo sapiens
85 MAP2K1 5604
Biochemical Activity Homo sapiens
86 PLSCR3 57048
Biochemical Activity Homo sapiens
87 RNF7  
Reconstituted Complex Homo sapiens
88 Ywhae 29753
Affinity Capture-Western Rattus norvegicus
89 Slc6a3  
Affinity Capture-Western Rattus norvegicus
90 SERPIND1 3053
Biochemical Activity Homo sapiens
91 SGK2  
Biochemical Activity Homo sapiens
92 TRPT1 83707
Biochemical Activity Homo sapiens
93 CUEDC1 404093
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
94 EIF5 1983
Biochemical Activity Homo sapiens
Reconstituted Complex Homo sapiens
95 Kcnq3  
Affinity Capture-Western Rattus norvegicus
Affinity Capture-Western Rattus norvegicus
View the network image/svg+xml



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