Gene description for PCF11
Gene name PCF11 cleavage and polyadenylation factor subunit
Gene symbol PCF11
Other names/aliases -
Species Homo sapiens
 Database cross references - PCF11
ExoCarta ExoCarta_51585
Vesiclepedia VP_51585
Entrez Gene 51585
HGNC 30097
MIM 608876
UniProt O94913  
 PCF11 identified in exosomes derived from the following tissue/cell type
Urine 22418980    
Urine 22418980    
 Gene ontology annotations for PCF11
Molecular Function
    RNA polymerase II complex binding GO:0000993 IBA
    RNA polymerase II complex binding GO:0000993 IDA
    mRNA binding GO:0003729 IBA
    protein binding GO:0005515 IPI
Biological Process
    termination of RNA polymerase II transcription GO:0006369 IBA
    termination of RNA polymerase II transcription GO:0006369 IDA
    co-transcriptional mRNA 3'-end processing, cleavage and polyadenylation pathway GO:0180010 NAS
Subcellular Localization
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    cytoplasm GO:0005737 IBA
    mitochondrion GO:0005739 IDA
    mRNA cleavage factor complex GO:0005849 IBA
    mRNA cleavage factor complex GO:0005849 NAS
 Experiment description of studies that identified PCF11 in exosomes
1
Experiment ID 196
MISEV standards
EM
Biophysical techniques
Alix|TSG101|HSP70|CD9
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 22418980    
Organism Homo sapiens
Experiment description A multiplex quantitative proteomics strategy for protein biomarker studies in urinary exosomes.
Authors "Raj DA, Fiume I, Capasso G, Pocsfalvi G."
Journal name Kidney Int
Publication year 2012
Sample Urine
Sample name Urine - Normal high density
Isolation/purification methods Differential centrifugation
Sucrose cushion
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
2
Experiment ID 197
MISEV standards
EM
Biophysical techniques
Alix|TSG101|HSP70|CD9
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 22418980    
Organism Homo sapiens
Experiment description A multiplex quantitative proteomics strategy for protein biomarker studies in urinary exosomes.
Authors "Raj DA, Fiume I, Capasso G, Pocsfalvi G."
Journal name Kidney Int
Publication year 2012
Sample Urine
Sample name Urine - Normal low density
Isolation/purification methods Differential centrifugation
Sucrose cushion
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for PCF11
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 HNRNPH1 3187
Affinity Capture-RNA Homo sapiens
2 POLR2C 5432
Proximity Label-MS Homo sapiens
3 SCARNA22  
Affinity Capture-RNA Homo sapiens
4 GATA1  
Proximity Label-MS Homo sapiens
5 NUDT21 11051
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
6 MECP2 4204
Affinity Capture-MS Homo sapiens
7 SRRM1 10250
Affinity Capture-MS Homo sapiens
8 FUS 2521
Affinity Capture-MS Homo sapiens
9 CPSF2 53981
Co-fractionation Homo sapiens
10 SIRT6  
Affinity Capture-MS Homo sapiens
11 CEP170P1  
Affinity Capture-MS Homo sapiens
12 PABPC4 8761
Co-fractionation Homo sapiens
13 RBM14 10432
Affinity Capture-MS Homo sapiens
14 CPSF6 11052
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
15 Cdkn2aip  
Affinity Capture-MS Mus musculus
16 CDK8 1024
Affinity Capture-MS Homo sapiens
17 CPSF7 79869
Co-fractionation Homo sapiens
18 PTBP1 5725
Co-fractionation Homo sapiens
19 PLCB1 23236
Co-fractionation Homo sapiens
20 SSU72 29101
Proximity Label-MS Homo sapiens
21 NTRK1 4914
Affinity Capture-MS Homo sapiens
22 RPA2 6118
Affinity Capture-MS Homo sapiens
23 PLRG1 5356
Co-fractionation Homo sapiens
24 ANAPC15  
Affinity Capture-MS Homo sapiens
25 RPA1 6117
Affinity Capture-MS Homo sapiens
26 CDKN2AIP  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
27 WDR33 55339
Co-fractionation Homo sapiens
28 DHX8 1659
Proximity Label-MS Homo sapiens
29 TJP1 7082
Co-fractionation Homo sapiens
30 MAPK3 5595
Affinity Capture-MS Homo sapiens
31 MAGEA11  
Affinity Capture-Western Homo sapiens
FRET Homo sapiens
Co-crystal Structure Homo sapiens
Reconstituted Complex Homo sapiens
32 DNAJC17  
Proximity Label-MS Homo sapiens
33 MRPL50 54534
Affinity Capture-MS Homo sapiens
34 CPSF3 51692
Co-fractionation Homo sapiens
35 PHAX  
Affinity Capture-MS Homo sapiens
36 SNRPA 6626
Affinity Capture-MS Homo sapiens
37 HNRNPA1 3178
Proximity Label-MS Homo sapiens
38 SAMD1  
Affinity Capture-MS Homo sapiens
39 RBM27  
Co-fractionation Homo sapiens
40 NUP35 129401
Proximity Label-MS Homo sapiens
41 CSTF2 1478
Co-fractionation Homo sapiens
42 TXNDC9 10190
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
43 NXF1 10482
Affinity Capture-RNA Homo sapiens
44 ANKRD50 57182
Affinity Capture-MS Homo sapiens
45 MRE11A 4361
Co-fractionation Homo sapiens
46 DHX40  
Proximity Label-MS Homo sapiens
47 PDCD4 27250
Co-fractionation Homo sapiens
48 ERCC3  
Co-fractionation Homo sapiens
49 SFPQ 6421
Co-fractionation Homo sapiens
50 VRK1 7443
Affinity Capture-MS Homo sapiens
51 ATF7  
Co-fractionation Homo sapiens
52 DHX16 8449
Co-fractionation Homo sapiens
53 MOV10 4343
Affinity Capture-RNA Homo sapiens
54 Rprd1b  
Affinity Capture-MS Mus musculus
55 RPA3 6119
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
56 CAPRIN1 4076
Co-fractionation Homo sapiens
57 GATA3  
Proximity Label-MS Homo sapiens
58 EMC2 9694
Affinity Capture-MS Homo sapiens
59 TNPO3 23534
Affinity Capture-MS Homo sapiens
60 UBA2 10054
Co-fractionation Homo sapiens
61 U2AF2 11338
Co-fractionation Homo sapiens
62 TOP1 7150
Affinity Capture-MS Homo sapiens
63 DTX2 113878
Proximity Label-MS Homo sapiens
64 EEFSEC 60678
Co-fractionation Homo sapiens
65 FIP1L1 81608
Co-fractionation Homo sapiens
66 SNW1 22938
Affinity Capture-MS Homo sapiens
67 Junb  
Affinity Capture-MS Mus musculus
68 ALYREF 10189
Affinity Capture-Western Homo sapiens
69 AR 367
Proximity Label-MS Homo sapiens
70 USF1  
Affinity Capture-MS Homo sapiens
71 PSMD9 5715
Affinity Capture-MS Homo sapiens
72 IFI27L1  
Affinity Capture-MS Homo sapiens
73 SSRP1 6749
Affinity Capture-MS Homo sapiens
74 CLP1  
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
75 BCAS2 10286
Co-fractionation Homo sapiens
76 SP7  
Proximity Label-MS Homo sapiens
77 AK1 203
Affinity Capture-MS Homo sapiens
78 PEA15 8682
Affinity Capture-MS Homo sapiens
79 CEBPA  
Proximity Label-MS Homo sapiens
80 RANGAP1 5905
Co-fractionation Homo sapiens
81 Clp1  
Affinity Capture-MS Mus musculus
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