Gene ontology annotations for SERPINA1 |
|
Experiment description of studies that identified SERPINA1 in exosomes |
1 |
Experiment ID |
494 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
CD9|CD81|CD151|CD63|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|SDCBP|TFRC|TSG101
|
Enriched markers |
✘
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
35931686
|
Organism |
Homo sapiens |
Experiment description |
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression |
Authors |
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD." |
Journal name |
Cell Death Dis
|
Publication year |
2022 |
Sample |
Chondrocytes |
Sample name |
Osteoarthritic cartilage |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
2 |
Experiment ID |
496 |
MISEV standards |
✘
|
Biophysical techniques |
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|SDCBP|TFRC|TSG101
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
35931686
|
Organism |
Homo sapiens |
Experiment description |
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression |
Authors |
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD." |
Journal name |
Cell Death Dis
|
Publication year |
2022 |
Sample |
Chondrocytes |
Sample name |
Healthy cartilage |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
3 |
Experiment ID |
497 |
MISEV standards |
✘
|
Biophysical techniques |
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
|
Enriched markers |
✘
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
35931686
|
Organism |
Homo sapiens |
Experiment description |
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression |
Authors |
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD." |
Journal name |
Cell Death Dis
|
Publication year |
2022 |
Sample |
Chondrocytes |
Sample name |
T/C-28a2 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
4 |
Experiment ID |
498 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
|
Enriched markers |
✘
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
Protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
35931686
|
Organism |
Homo sapiens |
Experiment description |
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression |
Authors |
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD." |
Journal name |
Cell Death Dis
|
Publication year |
2022 |
Sample |
Chondrocytes |
Sample name |
T/C-28a2 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectometry |
|
|
5 |
Experiment ID |
20 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
HSP90|CD63|CD81|LAMP1
|
Enriched markers |
✔
GOLGA2|cytochrome c
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
17956143
|
Organism |
Homo sapiens |
Experiment description |
Proteomic analysis of microvesicles derived from human colorectal cancer cells. |
Authors |
"Choi DS, Lee JM, Park GW, Lim HW, Bang JY, Kim YK, Kwon KH, Kwon HJ, Kim KP, Gho YS" |
Journal name |
JPR
|
Publication year |
2007 |
Sample |
Colorectal cancer cells |
Sample name |
HT29 |
Isolation/purification methods |
Differential centrifugation Sucrose density gradient Diafiltration |
Flotation density |
1.16 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry [LTQ] Western blotting |
|
|
6 |
Experiment ID |
285 |
MISEV standards |
✔
CEM
|
Biophysical techniques |
✔
Alix|TSG101|CD63|CD81|EpCAM
|
Enriched markers |
✘
|
Negative markers |
✔
DLS
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25890246
|
Organism |
Homo sapiens |
Experiment description |
Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct. |
Authors |
"Xu R, Greening DW, Rai A, Ji H, Simpson RJ." |
Journal name |
Methods
|
Publication year |
2015 |
Sample |
Colorectal cancer cells |
Sample name |
LIM1863 - Sequential centrifugal ultrafiltration - Rep 1 |
Isolation/purification methods |
Differential centrifugation Filtration Sequential centrifugal ultrafiltration Centrifugal concentration |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry Western blotting |
|
|
7 |
Experiment ID |
286 |
MISEV standards |
✔
CEM
|
Biophysical techniques |
✔
Alix|TSG101|CD63|CD81|EpCAM
|
Enriched markers |
✘
|
Negative markers |
✔
DLS
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25890246
|
Organism |
Homo sapiens |
Experiment description |
Highly-purified exosomes and shed microvesicles isolated from the human colon cancer cell line LIM1863 by sequential centrifugal ultrafiltration are biochemically and functionally distinct. |
Authors |
"Xu R, Greening DW, Rai A, Ji H, Simpson RJ." |
Journal name |
Methods
|
Publication year |
2015 |
Sample |
Colorectal cancer cells |
Sample name |
LIM1863 - Sequential centrifugal ultrafiltration - Rep 2 |
Isolation/purification methods |
Differential centrifugation Filtration Sequential centrifugal ultrafiltration Centrifugal concentration |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry Western blotting |
|
|
8 |
Experiment ID |
234 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
TSG101|Alix|HSC70|GAPDH
|
Enriched markers |
✔
HSP90B1
|
Negative markers |
✔
qNano
|
Particle analysis
|
|
Identified molecule |
mRNA
|
Identification method |
RNA Sequencing
|
PubMed ID |
26054723
|
Organism |
Homo sapiens |
Experiment description |
Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs |
Authors |
"He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N" |
Journal name |
Carcinogenesis
|
Publication year |
2015 |
Sample |
Hepatocellular carcinoma cells |
Sample name |
HKCI-C3 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Sucrose density gradient |
Flotation density |
1.13-1.19 g/mL
|
Molecules identified in the study |
Protein RNA |
Methods used in the study |
Western blotting Mass spectrometry RT-PCR RNA Sequencing |
|
|
9 |
Experiment ID |
237 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
TSG101|Alix|HSC70|GAPDH
|
Enriched markers |
✔
HSP90B1
|
Negative markers |
✔
qNano
|
Particle analysis
|
|
Identified molecule |
mRNA
|
Identification method |
RNA Sequencing
|
PubMed ID |
26054723
|
Organism |
Homo sapiens |
Experiment description |
Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs |
Authors |
"He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N" |
Journal name |
Carcinogenesis
|
Publication year |
2015 |
Sample |
Hepatocytes |
Sample name |
MIHA |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Sucrose density gradient |
Flotation density |
1.13-1.19 g/mL
|
Molecules identified in the study |
Protein RNA |
Methods used in the study |
Western blotting Mass spectrometry RNA Sequencing |
|
|
10 |
Experiment ID |
266 |
MISEV standards |
✘
|
Biophysical techniques |
✔
TSG101|Alix
|
Enriched markers |
✔
CANX|HSP90B1
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25265333
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomic Analysis of Exosome Protein Content Changes Induced by Hepatitis B Virus in Huh-7 Cells Using SILAC Labeling and LC-MS/MS |
Authors |
"Zhao X, Wu Y, Duan J, Ma Y, Shen Z, Wei L, Cui X, Zhang J, Xie Y, Liu J" |
Journal name |
J Proteome Res
|
Publication year |
2014 |
Sample |
Liver cancer cells |
Sample name |
Huh-7 - Wild type |
Isolation/purification methods |
Differential centrifugation Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
11 |
Experiment ID |
268 |
MISEV standards |
✘
|
Biophysical techniques |
✔
TSG101|Alix
|
Enriched markers |
✔
CANX|HSP90B1
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25265333
|
Organism |
Homo sapiens |
Experiment description |
Quantitative Proteomic Analysis of Exosome Protein Content Changes Induced by Hepatitis B Virus in Huh-7 Cells Using SILAC Labeling and LC-MS/MS |
Authors |
"Zhao X, Wu Y, Duan J, Ma Y, Shen Z, Wei L, Cui X, Zhang J, Xie Y, Liu J" |
Journal name |
J Proteome Res
|
Publication year |
2014 |
Sample |
Liver cancer cells |
Sample name |
Huh-7 - Transfected with HBx-null HBV replicon plasmids |
Isolation/purification methods |
Differential centrifugation Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
12 |
Experiment ID |
126 |
MISEV standards |
✘
|
Biophysical techniques |
✔
GAPDH
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry [LTQ-FT Ultra]
|
PubMed ID |
Unpublished / Not applicable
|
Organism |
Homo sapiens |
Experiment description |
Mesenchymal Stem Cell Exosomes: The Future MSC-based Therapy? |
Authors |
"Ruenn Chai Lai, Ronne Wee Yeh Yeo, Soon Sim Tan, Bin Zhang, Yijun Yin, Newman Siu Kwan Sze, Andre Choo, and Sai Kiang Lim" |
Journal name |
Mesenchymal Stem Cell Therapy
|
Publication year |
2011 |
Sample |
Mesenchymal stem cells |
Sample name |
huES9.E1 |
Isolation/purification methods |
HPLC |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Western blotting Antobody array Mass spectrometry |
|
|
13 |
Experiment ID |
44 |
MISEV standards |
✔
IEM
|
Biophysical techniques |
✘
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
19028452
|
Organism |
Homo sapiens |
Experiment description |
Proteomic profiling of human plasma exosomes identifies PPARgamma as an exosome-associated protein. |
Authors |
"Looze C, Yui D, Leung L, Ingham M, Kaler M, Yao X, Wu WW, Shen RF, Daniels MP, Levine SJ" |
Journal name |
BBRC
|
Publication year |
2009 |
Sample |
Plasma |
Sample name |
Plasma |
Isolation/purification methods |
Filtration Size exclusion Sucrose density gradient |
Flotation density |
1.15-1.16 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry [LTQ] Western blotting Immunoelectron Microscopy |
|
|
14 |
Experiment ID |
231 |
MISEV standards |
✘
|
Biophysical techniques |
✔
Alix|CD63|CD9
|
Enriched markers |
✘
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25332113
|
Organism |
Homo sapiens |
Experiment description |
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets |
Authors |
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G." |
Journal name |
Transfusion
|
Publication year |
2015 |
Sample |
Platelets |
Sample name |
PL-Exs - Rep 1 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient |
Flotation density |
1.12-1.15 g/mL
|
Molecules identified in the study |
Protein Lipids |
Methods used in the study |
Western blotting Mass spectrometry |
|
|
15 |
Experiment ID |
232 |
MISEV standards |
✘
|
Biophysical techniques |
✘
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25332113
|
Organism |
Homo sapiens |
Experiment description |
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets |
Authors |
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G." |
Journal name |
Transfusion
|
Publication year |
2015 |
Sample |
Platelets |
Sample name |
PL-Exs - Rep 2 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient |
Flotation density |
1.12-1.15 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
16 |
Experiment ID |
233 |
MISEV standards |
✘
|
Biophysical techniques |
✘
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
25332113
|
Organism |
Homo sapiens |
Experiment description |
Lipidomic and proteomic characterization of platelet extracellular vesicle subfractions from senescent platelets |
Authors |
"Pienimaeki-Roemer A, Kuhlmann K, Bottcher A, Konovalova T, Black A, Orso E, Liebisch G, Ahrens M, Eisenacher M, Meyer HE, Schmitz G." |
Journal name |
Transfusion
|
Publication year |
2015 |
Sample |
Platelets |
Sample name |
PL-Exs - Rep 3 |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation Optiprep density gradient |
Flotation density |
1.12-1.15 g/mL
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
17 |
Experiment ID |
217 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
TSG101|CD81|CD9|CD63
|
Enriched markers |
✘
|
Negative markers |
✔
NTA
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
23844026
|
Organism |
Homo sapiens |
Experiment description |
Characterization of human thymic exosomes. |
Authors |
"Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O." |
Journal name |
PLoS One
|
Publication year |
2013 |
Sample |
Thymus |
Sample name |
Normal-Thymus |
Isolation/purification methods |
Differential centrifugation Filtration Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
18 |
Experiment ID |
13 |
MISEV standards |
✔
IEM
|
Biophysical techniques |
✔
Alix|RAB4|RAB5B|RAB11|TSG101|CD9|AQP2|AQP1
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
15326289
|
Organism |
Homo sapiens |
Experiment description |
Identification and proteomic profiling of exosomes in human urine. |
Authors |
"Pisitkun T, Shen RF, Knepper MA" |
Journal name |
PNAS
|
Publication year |
2004 |
Sample |
Urine |
Sample name |
Urine - Normal |
Isolation/purification methods |
Ultracentrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry [LCQ DECA XP] Western blotting |
|
|
19 |
Experiment ID |
63 |
MISEV standards |
✘
|
Biophysical techniques |
✔
AQP2
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
19056867
|
Organism |
Homo sapiens |
Experiment description |
Large-scale proteomics and phosphoproteomics of urinary exosomes. |
Authors |
"Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA" |
Journal name |
JASN
|
Publication year |
2009 |
Sample |
Urine |
Sample name |
Urine - Normal |
Isolation/purification methods |
Differential centrifugation |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry [LTQ] Western blotting |
|
|
20 |
Experiment ID |
193 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
CD63|CD9
|
Enriched markers |
✔
PHB
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
21595033
|
Organism |
Homo sapiens |
Experiment description |
Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy. |
Authors |
"Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC." |
Journal name |
Proteomics
|
Publication year |
2011 |
Sample |
Urine |
Sample name |
Urine - Normal |
Isolation/purification methods |
Differential centrifugation Ultracentrifugation Sucrose density gradient |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
21 |
Experiment ID |
194 |
MISEV standards |
✘
|
Biophysical techniques |
✘
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
21595033
|
Organism |
Homo sapiens |
Experiment description |
Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy. |
Authors |
"Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC." |
Journal name |
Proteomics
|
Publication year |
2011 |
Sample |
Urine |
Sample name |
Urine - Patients of basement membrane nephropathy |
Isolation/purification methods |
Differential centrifugation Ultracentrifugation Sucrose density gradient |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
22 |
Experiment ID |
195 |
MISEV standards |
✘
|
Biophysical techniques |
✘
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
21595033
|
Organism |
Homo sapiens |
Experiment description |
Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy. |
Authors |
"Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC." |
Journal name |
Proteomics
|
Publication year |
2011 |
Sample |
Urine |
Sample name |
Urine - Patients of early IgA nephropathy |
Isolation/purification methods |
Differential centrifugation Ultracentrifugation Sucrose density gradient |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
23 |
Experiment ID |
196 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Alix|TSG101|HSP70|CD9
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
22418980
|
Organism |
Homo sapiens |
Experiment description |
A multiplex quantitative proteomics strategy for protein biomarker studies in urinary exosomes. |
Authors |
"Raj DA, Fiume I, Capasso G, Pocsfalvi G." |
Journal name |
Kidney Int
|
Publication year |
2012 |
Sample |
Urine |
Sample name |
Urine - Normal high density |
Isolation/purification methods |
Differential centrifugation Sucrose cushion |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
24 |
Experiment ID |
197 |
MISEV standards |
✔
EM
|
Biophysical techniques |
✔
Alix|TSG101|HSP70|CD9
|
Enriched markers |
✘
|
Negative markers |
✘
|
Particle analysis
|
|
Identified molecule |
protein
|
Identification method |
Mass spectrometry
|
PubMed ID |
22418980
|
Organism |
Homo sapiens |
Experiment description |
A multiplex quantitative proteomics strategy for protein biomarker studies in urinary exosomes. |
Authors |
"Raj DA, Fiume I, Capasso G, Pocsfalvi G." |
Journal name |
Kidney Int
|
Publication year |
2012 |
Sample |
Urine |
Sample name |
Urine - Normal low density |
Isolation/purification methods |
Differential centrifugation Sucrose cushion |
Flotation density |
-
|
Molecules identified in the study |
Protein |
Methods used in the study |
Mass spectrometry |
|
|
Protein-protein interactions for SERPINA1 |
|
Protein Interactor |
ExoCarta ID |
Identification method |
PubMed |
Species |
1 |
MIS12 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
2 |
HBB |
3043 |
Affinity Capture-MS |
|
Homo sapiens |
|
3 |
STATH |
|
Affinity Capture-MS |
|
Homo sapiens |
|
4 |
SEP15 |
9403 |
Affinity Capture-MS |
|
Homo sapiens |
|
5 |
DERL2 |
51009 |
Affinity Capture-Western |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
|
6 |
GC |
2638 |
Affinity Capture-MS |
|
Homo sapiens |
|
7 |
ALDH2 |
217 |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
8 |
EBF2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
9 |
SYVN1 |
84447 |
Affinity Capture-Western |
|
Homo sapiens |
|
10 |
AZGP1 |
563 |
Affinity Capture-MS |
|
Homo sapiens |
|
11 |
SOX2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
12 |
FNDC5 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
13 |
RHBDD1 |
84236 |
Affinity Capture-MS |
|
Homo sapiens |
|
14 |
HPX |
3263 |
Affinity Capture-MS |
|
Homo sapiens |
|
15 |
CHST10 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
16 |
HP |
3240 |
Affinity Capture-MS |
|
Homo sapiens |
|
17 |
CCNA2 |
890 |
Affinity Capture-MS |
|
Homo sapiens |
|
18 |
ORM1 |
5004 |
Affinity Capture-MS |
|
Homo sapiens |
|
19 |
CA8 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
20 |
EGFL8 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
21 |
VKORC1 |
79001 |
Two-hybrid |
|
Homo sapiens |
|
22 |
S100A9 |
6280 |
Affinity Capture-MS |
|
Homo sapiens |
|
23 |
SSR1 |
6745 |
Affinity Capture-Western |
|
Homo sapiens |
|
24 |
SFXN4 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
25 |
GSDMB |
|
Two-hybrid |
|
Homo sapiens |
|
26 |
CTRL |
|
Affinity Capture-MS |
|
Homo sapiens |
|
27 |
TCEB3B |
|
Affinity Capture-MS |
|
Homo sapiens |
|
28 |
SLX4 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
29 |
PHF11 |
51131 |
Affinity Capture-MS |
|
Homo sapiens |
|
30 |
FNDC1 |
84624 |
Affinity Capture-MS |
|
Homo sapiens |
|
31 |
PRTN3 |
5657 |
Biochemical Activity |
|
Homo sapiens |
|
32 |
SNX27 |
81609 |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
33 |
ICE2 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
34 |
C18orf21 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
35 |
HSPA8 |
3312 |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
36 |
DDX19B |
11269 |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
37 |
DDX31 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
38 |
GNG8 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
39 |
PARK2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
40 |
WHSC1 |
7468 |
Affinity Capture-MS |
|
Homo sapiens |
|
41 |
CLU |
1191 |
Affinity Capture-MS |
|
Homo sapiens |
|
42 |
PLK2 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
43 |
FUNDC2 |
65991 |
Affinity Capture-MS |
|
Homo sapiens |
|
44 |
GOLGA8A |
23015 |
Affinity Capture-MS |
|
Homo sapiens |
|
45 |
VCP |
7415 |
Affinity Capture-Western |
|
Homo sapiens |
|
46 |
SARAF |
|
Affinity Capture-MS |
|
Homo sapiens |
|
47 |
SSUH2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
48 |
GDPD1 |
284161 |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
49 |
YWHAQ |
10971 |
Affinity Capture-MS |
|
Homo sapiens |
|
50 |
RPA4 |
|
Proximity Label-MS |
|
Homo sapiens |
|
51 |
LCN1 |
3933 |
Affinity Capture-MS |
|
Homo sapiens |
|
52 |
ELANE |
1991 |
Reconstituted Complex |
|
Homo sapiens |
|
53 |
HCN1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
54 |
SERPINA3 |
12 |
Affinity Capture-MS |
|
Homo sapiens |
|
55 |
GJB5 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
56 |
RAP2A |
5911 |
Two-hybrid |
|
Homo sapiens |
|
57 |
HSPA5 |
3309 |
Affinity Capture-Western |
|
Homo sapiens |
|
58 |
PPP2R2B |
5521 |
Affinity Capture-MS |
|
Homo sapiens |
|
59 |
FANCD2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
60 |
CANX |
821 |
Affinity Capture-Western |
|
Homo sapiens |
|
61 |
AGPAT1 |
10554 |
Affinity Capture-MS |
|
Homo sapiens |
|
62 |
ITLN2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
63 |
HDAC9 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
64 |
ERLEC1 |
27248 |
Affinity Capture-Western |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
|
65 |
CP |
1356 |
Affinity Capture-MS |
|
Homo sapiens |
|
66 |
UPF3A |
|
Affinity Capture-MS |
|
Homo sapiens |
|
67 |
ECHS1 |
1892 |
Two-hybrid |
|
Homo sapiens |
|
68 |
LAMTOR5 |
10542 |
Two-hybrid |
|
Homo sapiens |
|
69 |
KRT27 |
342574 |
Affinity Capture-MS |
|
Homo sapiens |
|
70 |
MAPK6 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
71 |
PRR4 |
11272 |
Affinity Capture-MS |
|
Homo sapiens |
|
72 |
ZNF558 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
73 |
KLK3 |
|
Affinity Capture-Western |
|
Homo sapiens |
|
74 |
FBXO2 |
26232 |
Affinity Capture-Western |
|
Homo sapiens |
|
75 |
GOT1L1 |
|
Affinity Capture-MS |
|
Homo sapiens |
Affinity Capture-MS |
|
Homo sapiens |
|
76 |
IGLC1 |
3537 |
Affinity Capture-MS |
|
Homo sapiens |
|
77 |
STX17 |
55014 |
Affinity Capture-MS |
|
Homo sapiens |
|
78 |
RIPPLY3 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
79 |
UBE2U |
|
Affinity Capture-MS |
|
Homo sapiens |
|
80 |
SDC2 |
6383 |
Two-hybrid |
|
Homo sapiens |
|
81 |
CIR1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
82 |
SCGB1D1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
83 |
MICU3 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
84 |
EDEM1 |
|
Affinity Capture-Western |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
|
85 |
TIMM10 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
86 |
FGB |
2244 |
Affinity Capture-MS |
|
Homo sapiens |
|
87 |
SQSTM1 |
8878 |
Affinity Capture-Western |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
|
88 |
SMAD4 |
|
Two-hybrid |
|
Homo sapiens |
|
89 |
SSBP2 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
90 |
RCHY1 |
|
Two-hybrid |
|
Homo sapiens |
|
91 |
OS9 |
10956 |
Affinity Capture-Western |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
|
92 |
OR2L13 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
93 |
PDE6D |
5147 |
Affinity Capture-MS |
|
Homo sapiens |
|
94 |
TF |
7018 |
Affinity Capture-MS |
|
Homo sapiens |
|
95 |
MBNL1 |
4154 |
Affinity Capture-MS |
|
Homo sapiens |
|
96 |
KLK10 |
5655 |
Affinity Capture-MS |
|
Homo sapiens |
|
97 |
KLK4 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
98 |
PRKX |
5613 |
Affinity Capture-MS |
|
Homo sapiens |
|
99 |
ATP5C1 |
509 |
Two-hybrid |
|
Homo sapiens |
|
100 |
SMIM8 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
101 |
APOA1 |
335 |
Affinity Capture-MS |
|
Homo sapiens |
|
102 |
MATN2 |
4147 |
Affinity Capture-MS |
|
Homo sapiens |
|
103 |
CCR1 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
104 |
P2RX6 |
|
Affinity Capture-MS |
|
Homo sapiens |
|
105 |
DERL1 |
79139 |
Affinity Capture-Western |
|
Homo sapiens |
Affinity Capture-Western |
|
Homo sapiens |
|
| | | |