Gene description for WHSC1
Gene name Wolf-Hirschhorn syndrome candidate 1
Gene symbol WHSC1
Other names/aliases MMSET
NSD2
REIIBP
TRX5
WHS
Species Homo sapiens
 Database cross references - WHSC1
ExoCarta ExoCarta_7468
Vesiclepedia VP_7468
Entrez Gene 7468
HGNC 12766
MIM 602952
UniProt O96028  
 WHSC1 identified in exosomes derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
Urine 21595033    
Urine 21595033    
Urine 21595033    
 Gene ontology annotations for WHSC1
Molecular Function
    chromatin binding GO:0003682 IEA
    protein binding GO:0005515 IPI
    histone H4K20 methyltransferase activity GO:0042799 TAS
    sequence-specific DNA binding GO:0043565 IEA
    metal ion binding GO:0046872 IEA
    histone H3K36 methyltransferase activity GO:0046975 IBA
    histone H3K36 methyltransferase activity GO:0046975 IMP
    histone H3 methyltransferase activity GO:0140938 TAS
    histone H3K36 dimethyltransferase activity GO:0140954 IEA
    histone H3K36 trimethyltransferase activity GO:0140955 IEA
Biological Process
    negative regulation of transcription by RNA polymerase II GO:0000122 IEA
    membranous septum morphogenesis GO:0003149 IEA
    atrial septum primum morphogenesis GO:0003289 IEA
    atrial septum secundum morphogenesis GO:0003290 IEA
    double-strand break repair GO:0006302 TAS
    chromatin remodeling GO:0006338 IEA
    regulation of DNA-templated transcription GO:0006355 IBA
    methylation GO:0032259 IEA
    positive regulation of isotype switching to IgA isotypes GO:0048298 IEA
    bone development GO:0060348 IEA
    regulation of establishment of protein localization GO:0070201 IEA
    regulation of double-strand break repair via nonhomologous end joining GO:2001032 IEA
Subcellular Localization
    chromatin GO:0000785 IBA
    nucleus GO:0005634 IBA
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    nucleolus GO:0005730 IEA
    cytoplasm GO:0005737 IEA
 Experiment description of studies that identified WHSC1 in exosomes
1
Experiment ID 235
MISEV standards
EM
Biophysical techniques
TSG101|Alix|HSC70|GAPDH
Enriched markers
HSP90B1
Negative markers
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
2
Experiment ID 193
MISEV standards
EM
Biophysical techniques
CD63|CD9
Enriched markers
PHB
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 21595033    
Organism Homo sapiens
Experiment description Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy.
Authors "Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC."
Journal name Proteomics
Publication year 2011
Sample Urine
Sample name Urine - Normal
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
3
Experiment ID 194
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 21595033    
Organism Homo sapiens
Experiment description Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy.
Authors "Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC."
Journal name Proteomics
Publication year 2011
Sample Urine
Sample name Urine - Patients of basement membrane nephropathy
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
4
Experiment ID 195
MISEV standards
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 21595033    
Organism Homo sapiens
Experiment description Proteomic analysis of urinary exosomes from patients of early IgA nephropathy and thin basement membrane nephropathy.
Authors "Moon PG, Lee JE, You S, Kim TK, Cho JH, Kim IS, Kwon TH, Kim CD, Park SH, Hwang D, Kim YL, Baek MC."
Journal name Proteomics
Publication year 2011
Sample Urine
Sample name Urine - Patients of early IgA nephropathy
Isolation/purification methods Differential centrifugation
Ultracentrifugation
Sucrose density gradient
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for WHSC1
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 RPL11 6135
Affinity Capture-MS Homo sapiens
2 CDC14B 8555
Proximity Label-MS Homo sapiens
3 HIST2H2BE 8349
Affinity Capture-MS Homo sapiens
4 ZNF668  
Affinity Capture-MS Homo sapiens
5 ORC2  
Proximity Label-MS Homo sapiens
6 HBB 3043
Affinity Capture-MS Homo sapiens
7 RSL1D1 26156
Affinity Capture-MS Homo sapiens
8 HDAC2 3066
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
9 STATH  
Affinity Capture-MS Homo sapiens
10 COIL  
Proximity Label-MS Homo sapiens
11 RPS3A 6189
Affinity Capture-MS Homo sapiens
12 RPL30 6156
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
13 ORM1 5004
Affinity Capture-MS Homo sapiens
14 GC 2638
Affinity Capture-MS Homo sapiens
15 RPL37A 6168
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
16 SUB1 10923
Proximity Label-MS Homo sapiens
17 BRCA1 672
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
18 RPS19 6223
Affinity Capture-MS Homo sapiens
19 PLEKHF2 79666
Two-hybrid Homo sapiens
20 RPL15 6138
Proximity Label-MS Homo sapiens
21 BRD2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
22 RPL14 9045
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
23 PPIA 5478
Proximity Label-MS Homo sapiens
24 PNMAL1  
Affinity Capture-MS Homo sapiens
25 AZGP1 563
Affinity Capture-MS Homo sapiens
26 APP 351
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
27 FAU 2197
Affinity Capture-MS Homo sapiens
28 CENPA  
Proximity Label-MS Homo sapiens
29 HPX 3263
Affinity Capture-MS Homo sapiens
30 APEX1 328
Affinity Capture-RNA Homo sapiens
Proximity Label-MS Homo sapiens
31 GPATCH4 54865
Affinity Capture-MS Homo sapiens
32 RPS26 6231
Proximity Label-MS Homo sapiens
33 HP 3240
Affinity Capture-MS Homo sapiens
34 ZBTB33  
Proximity Label-MS Homo sapiens
35 TRIM28 10155
Affinity Capture-Western Homo sapiens
Proximity Label-MS Homo sapiens
36 PRR11  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
37 FGA 2243
Affinity Capture-MS Homo sapiens
38 CXorf56  
Proximity Label-MS Homo sapiens
39 RPL24 6152
Proximity Label-MS Homo sapiens
40 LLPH  
Affinity Capture-MS Homo sapiens
41 PFKFB2 5208
Affinity Capture-MS Homo sapiens
42 MAP1B 4131
Affinity Capture-MS Homo sapiens
43 MYO1E 4643
Affinity Capture-MS Homo sapiens
44 CCDC137  
Affinity Capture-MS Homo sapiens
45 KDM2A  
Proximity Label-MS Homo sapiens
46 FLNA 2316
Proximity Label-MS Homo sapiens
47 RPS10 6204
Affinity Capture-MS Homo sapiens
48 IQGAP1 8826
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
49 NPM1 4869
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
50 MDC1  
Affinity Capture-Western Homo sapiens
Protein-peptide Homo sapiens
Affinity Capture-Western Homo sapiens
Proximity Label-MS Homo sapiens
51 ZNF512B  
Proximity Label-MS Homo sapiens
52 RPS8 6202
Proximity Label-MS Homo sapiens
53 ZNF2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
54 NCOA3  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
55 RPS9 6203
Affinity Capture-MS Homo sapiens
56 SRP14 6727
Affinity Capture-MS Homo sapiens
57 ADARB1 104
Affinity Capture-MS Homo sapiens
58 PRKRA 8575
Affinity Capture-MS Homo sapiens
59 HIST2H2AC 8338
Affinity Capture-MS Homo sapiens
60 BRD4 23476
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
61 MYCBP2 23077
Affinity Capture-MS Homo sapiens
62 RRP8  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
63 ZNF593  
Proximity Label-MS Homo sapiens
64 SERPINA1 5265
Affinity Capture-MS Homo sapiens
65 MECP2 4204
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
66 OASL 8638
Affinity Capture-MS Homo sapiens
67 NCK1 4690
Affinity Capture-MS Homo sapiens
68 ZNF280C  
Proximity Label-MS Homo sapiens
69 LSM1 27257
Co-fractionation Homo sapiens
70 LARP4B 23185
Affinity Capture-MS Homo sapiens
71 FEN1 2237
Proximity Label-MS Homo sapiens
72 LIN28A  
Affinity Capture-MS Homo sapiens
73 GTF2I 2969
Proximity Label-MS Homo sapiens
74 TIAM1  
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
75 GEMIN5 25929
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
76 TCOF1 6949
Proximity Label-MS Homo sapiens
77 HMGA1 3159
Affinity Capture-MS Homo sapiens
78 PCNP 57092
Proximity Label-MS Homo sapiens
79 ESR1  
Biochemical Activity Homo sapiens
80 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
Biochemical Activity Homo sapiens
Proximity Label-MS Homo sapiens
81 DDX21 9188
Affinity Capture-MS Homo sapiens
82 LIN28B  
Affinity Capture-MS Homo sapiens
83 TP53 7157
Reconstituted Complex Homo sapiens
84 RPL26 6154
Affinity Capture-MS Homo sapiens
85 RPL4 6124
Affinity Capture-MS Homo sapiens
86 WHSC1 7468
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
Affinity Capture-Western Homo sapiens
Biochemical Activity Homo sapiens
87 CLU 1191
Affinity Capture-MS Homo sapiens
88 CCDC88C 440193
Affinity Capture-MS Homo sapiens
89 ZBTB47  
Affinity Capture-MS Homo sapiens
90 HIST1H2AG 8969
Proximity Label-MS Homo sapiens
91 RBM4B  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
92 LYN 4067
Proximity Label-MS Homo sapiens
93 SRSF6 6431
Affinity Capture-MS Homo sapiens
94 CBX3 11335
Proximity Label-MS Homo sapiens
Proximity Label-MS Homo sapiens
95 NLRC5  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
96 DDX20 11218
Affinity Capture-MS Homo sapiens
97 TPX2  
Proximity Label-MS Homo sapiens
98 C11orf58  
Proximity Label-MS Homo sapiens
99 TAF12  
Affinity Capture-MS Homo sapiens
100 RPL31 6160
Proximity Label-MS Homo sapiens
101 HIST1H1E 3008
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
102 REXO4  
Affinity Capture-MS Homo sapiens
103 TOX4  
Proximity Label-MS Homo sapiens
104 RBMX2  
Affinity Capture-MS Homo sapiens
105 RPL36 25873
Affinity Capture-MS Homo sapiens
106 KIF11 3832
Affinity Capture-MS Homo sapiens
107 HIST1H1C 3006
Affinity Capture-MS Homo sapiens
108 HIST1H2BG 8339
Proximity Label-MS Homo sapiens
109 LCN1 3933
Affinity Capture-MS Homo sapiens
110 LYAR 55646
Affinity Capture-MS Homo sapiens
111 HECTD1 25831
Affinity Capture-MS Homo sapiens
112 RPLP0 6175
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
113 ATRX 546
Proximity Label-MS Homo sapiens
114 SRPK3  
Affinity Capture-MS Homo sapiens
115 MAGEB2 4113
Affinity Capture-MS Homo sapiens
116 NECAP1 25977
Affinity Capture-MS Homo sapiens
117 SERPINA3 12
Affinity Capture-MS Homo sapiens
118 MYBBP1A 10514
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
119 GTPBP4 23560
Proximity Label-MS Homo sapiens
120 GLTSCR2  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
121 RPL29 6159
Proximity Label-MS Homo sapiens
122 CPNE4 131034
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
123 CD3EAP  
Proximity Label-MS Homo sapiens
124 WDR46  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
125 CNBP 7555
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
126 FGFBP1 9982
Affinity Capture-MS Homo sapiens
127 NUMA1 4926
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
128 DTL  
Affinity Capture-Western Homo sapiens
129 RPL32 6161
Proximity Label-MS Homo sapiens
130 ZBTB2 57621
Affinity Capture-MS Homo sapiens
131 GOLGA3 2802
Affinity Capture-MS Homo sapiens
132 HIST1H3A 8350
Proximity Label-MS Homo sapiens
Biochemical Activity Homo sapiens
Biochemical Activity Homo sapiens
133 ABT1 29777
Affinity Capture-MS Homo sapiens
134 SORT1 6272
Affinity Capture-MS Homo sapiens
135 TMPO 7112
Proximity Label-MS Homo sapiens
136 RPS2 6187
Affinity Capture-MS Homo sapiens
137 BAZ1B 9031
Proximity Label-MS Homo sapiens
138 HIST2H3C 126961
Protein-peptide Homo sapiens
139 TPR 7175
Proximity Label-MS Homo sapiens
140 SMARCA5 8467
Proximity Label-MS Homo sapiens
141 SIRT7  
Affinity Capture-MS Homo sapiens
142 SRSF4 6429
Affinity Capture-MS Homo sapiens
143 CTNNB1 1499
Affinity Capture-Western Homo sapiens
144 PRPSAP2 5636
Affinity Capture-MS Homo sapiens
145 MEX3A  
Affinity Capture-RNA Homo sapiens
146 NPM3 10360
Affinity Capture-MS Homo sapiens
147 CP 1356
Affinity Capture-MS Homo sapiens
148 SAP30BP  
Proximity Label-MS Homo sapiens
149 PTEN 5728
Affinity Capture-Western Homo sapiens
150 SRSF5 6430
Affinity Capture-MS Homo sapiens
151 RPL3 6122
Affinity Capture-MS Homo sapiens
152 ADNP 23394
Proximity Label-MS Homo sapiens
153 NHP2 55651
Proximity Label-MS Homo sapiens
154 ANP32E 81611
Proximity Label-MS Homo sapiens
155 SIN3B  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
156 HIST3H3 8290
Protein-peptide Homo sapiens
Reconstituted Complex Homo sapiens
157 BAZ2A  
Proximity Label-MS Homo sapiens
158 HIST1H1B 3009
Affinity Capture-MS Homo sapiens
159 PRR4 11272
Affinity Capture-MS Homo sapiens
160 PCBP1 5093
Proximity Label-MS Homo sapiens
161 PTPN13 5783
Affinity Capture-MS Homo sapiens
162 ZNF692  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
163 TOP1 7150
Proximity Label-MS Homo sapiens
164 GATAD2B 57459
Proximity Label-MS Homo sapiens
165 HP1BP3 50809
Proximity Label-MS Homo sapiens
166 HIST1H1A 3024
Affinity Capture-MS Homo sapiens
167 SKIV2L2 23517
Affinity Capture-MS Homo sapiens
168 ENO1 2023
Proximity Label-MS Homo sapiens
169 PARP1 142
Affinity Capture-Western Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Proximity Label-MS Homo sapiens
170 ZC3HAV1 56829
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
171 H19 283120
Protein-RNA Homo sapiens
172 CCDC140  
Affinity Capture-MS Homo sapiens
173 LMNA 4000
Proximity Label-MS Homo sapiens
174 IGLC1 3537
Affinity Capture-MS Homo sapiens
175 ZC3H3  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
176 BRD3 8019
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
177 FTSJ3 117246
Proximity Label-MS Homo sapiens
178 SF3B2 10992
Proximity Label-MS Homo sapiens
179 HIST1H2AC 8334
Cross-Linking-MS (XL-MS) Homo sapiens
180 GEMIN4 50628
Affinity Capture-MS Homo sapiens
181 RPS16 6217
Affinity Capture-MS Homo sapiens
182 RPL19 6143
Affinity Capture-MS Homo sapiens
183 DDX46 9879
Proximity Label-MS Homo sapiens
184 RPL13 6137
Affinity Capture-MS Homo sapiens
185 YBX1 4904
Affinity Capture-MS Homo sapiens
186 SURF6  
Affinity Capture-MS Homo sapiens
187 RPS27A 6233
Proximity Label-MS Homo sapiens
188 HORMAD2  
Two-hybrid Homo sapiens
189 RNF151  
Affinity Capture-MS Homo sapiens
190 SMN1 6606
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
191 SCML2  
Proximity Label-MS Homo sapiens
192 ILF3 3609
Affinity Capture-MS Homo sapiens
193 WDR77 79084
Affinity Capture-MS Homo sapiens
194 RPL6 6128
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
195 PLEC 5339
Affinity Capture-MS Homo sapiens
196 SIN3A  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
197 MNDA 4332
Affinity Capture-MS Homo sapiens
198 HMGN2 3151
Affinity Capture-MS Homo sapiens
199 CHAMP1  
Proximity Label-MS Homo sapiens
200 DGCR8  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
201 HMGN5 79366
Affinity Capture-MS Homo sapiens
202 KNOP1 400506
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
203 FGB 2244
Affinity Capture-MS Homo sapiens
204 THRAP3 9967
Affinity Capture-MS Homo sapiens
205 UTP23  
Affinity Capture-MS Homo sapiens
206 C19orf43  
Proximity Label-MS Homo sapiens
207 HDAC1 3065
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
208 CHD4 1108
Proximity Label-MS Homo sapiens
209 EPN2 22905
Affinity Capture-MS Homo sapiens
210 CREB1  
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
211 FKBP5 2289
Affinity Capture-MS Homo sapiens
212 MKI67  
Proximity Label-MS Homo sapiens
213 HNRNPK 3190
Proximity Label-MS Homo sapiens
214 TF 7018
Affinity Capture-MS Homo sapiens
215 TOP2A 7153
Proximity Label-MS Homo sapiens
216 PCNA 5111