Gene description for NIPBL
Gene name Nipped-B homolog (Drosophila)
Gene symbol NIPBL
Other names/aliases CDLS
CDLS1
IDN3
IDN3-B
Scc2
Species Homo sapiens
 Database cross references - NIPBL
ExoCarta ExoCarta_25836
Vesiclepedia VP_25836
Entrez Gene 25836
HGNC 28862
MIM 608667
UniProt Q6KC79  
 NIPBL identified in exosomes derived from the following tissue/cell type
Plasma 19028452    
Urine 19056867    
 Gene ontology annotations for NIPBL
Molecular Function
    chromatin binding GO:0003682 IBA
    transcription corepressor activity GO:0003714 IDA
    protein binding GO:0005515 IPI
    mediator complex binding GO:0036033 IEA
    histone deacetylase binding GO:0042826 IPI
    cohesin loader activity GO:0061775 IMP
    chromo shadow domain binding GO:0070087 IPI
    promoter-specific chromatin binding GO:1990841 ISS
Biological Process
    mitotic sister chromatid segregation GO:0000070 IEA
    negative regulation of transcription by RNA polymerase II GO:0000122 IDA
    metanephros development GO:0001656 NAS
    heart morphogenesis GO:0003007 IBA
    heart morphogenesis GO:0003007 IMP
    outflow tract morphogenesis GO:0003151 IMP
    chromatin remodeling GO:0006338 IDA
    DNA damage response GO:0006974 IMP
    mitotic sister chromatid cohesion GO:0007064 IDA
    mitotic sister chromatid cohesion GO:0007064 IMP
    brain development GO:0007420 IBA
    brain development GO:0007420 IMP
    sensory perception of sound GO:0007605 IMP
    protein localization GO:0008104 IMP
    establishment of mitotic sister chromatid cohesion GO:0034087 IBA
    maintenance of mitotic sister chromatid cohesion GO:0034088 IMP
    somatic stem cell population maintenance GO:0035019 IEA
    embryonic forelimb morphogenesis GO:0035115 IMP
    forelimb morphogenesis GO:0035136 IMP
    external genitalia morphogenesis GO:0035261 IMP
    positive regulation of multicellular organism growth GO:0040018 IEA
    ear morphogenesis GO:0042471 IMP
    regulation of hair cycle GO:0042634 IMP
    fat cell differentiation GO:0045444 IEA
    positive regulation of ossification GO:0045778 IEA
    positive regulation of transcription by RNA polymerase II GO:0045944 IEA
    regulation of embryonic development GO:0045995 IMP
    embryonic digestive tract morphogenesis GO:0048557 IMP
    digestive tract development GO:0048565 IBA
    developmental growth GO:0048589 IMP
    eye morphogenesis GO:0048592 IMP
    regulation of developmental growth GO:0048638 IMP
    embryonic viscerocranium morphogenesis GO:0048703 IBA
    cognition GO:0050890 IMP
    face morphogenesis GO:0060325 IMP
    gallbladder development GO:0061010 IMP
    uterus morphogenesis GO:0061038 IMP
    establishment of protein localization to chromatin GO:0071169 IBA
    cellular response to X-ray GO:0071481 IMP
    replication-born double-strand break repair via sister chromatid exchange GO:1990414 IBA
    positive regulation of neuron migration GO:2001224 ISS
Subcellular Localization
    chromatin GO:0000785 IEA
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    cytosol GO:0005829 IDA
    integrator complex GO:0032039 ISS
    SMC loading complex GO:0032116 IDA
    intracellular membrane-bounded organelle GO:0043231 IDA
    extracellular exosome GO:0070062 HDA
    Scc2-Scc4 cohesin loading complex GO:0090694 IBA
    Scc2-Scc4 cohesin loading complex GO:0090694 IDA
 Experiment description of studies that identified NIPBL in exosomes
1
Experiment ID 44
MISEV standards
IEM
Biophysical techniques
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19028452    
Organism Homo sapiens
Experiment description Proteomic profiling of human plasma exosomes identifies PPARgamma as an exosome-associated protein.
Authors "Looze C, Yui D, Leung L, Ingham M, Kaler M, Yao X, Wu WW, Shen RF, Daniels MP, Levine SJ"
Journal name BBRC
Publication year 2009
Sample Plasma
Sample name Plasma
Isolation/purification methods Filtration
Size exclusion
Sucrose density gradient
Flotation density 1.15-1.16 g/mL
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
Immunoelectron Microscopy
2
Experiment ID 63
MISEV standards
Biophysical techniques
AQP2
Enriched markers
Negative markers
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 19056867    
Organism Homo sapiens
Experiment description Large-scale proteomics and phosphoproteomics of urinary exosomes.
Authors "Gonzales PA, Pisitkun T, Hoffert JD, Tchapyjnikov D, Star RA, Kleta R, Wang NS, Knepper MA"
Journal name JASN
Publication year 2009
Sample Urine
Sample name Urine - Normal
Isolation/purification methods Differential centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry [LTQ]
Western blotting
 Protein-protein interactions for NIPBL
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 HIST2H2BE 8349
Affinity Capture-MS Homo sapiens
2 SUCO  
Affinity Capture-MS Homo sapiens
3 SMC3 9126
Affinity Capture-Western Homo sapiens
4 CBX1 10951
Affinity Capture-MS Homo sapiens
5 IRF4  
Proximity Label-MS Homo sapiens
6 COIL  
Proximity Label-MS Homo sapiens
7 FEV  
Proximity Label-MS Homo sapiens
8 KPNA1 3836
Affinity Capture-MS Homo sapiens
9 RIT1 6016
Negative Genetic Homo sapiens
10 RPA2 6118
Affinity Capture-MS Homo sapiens
11 HIST1H2BG 8339
Proximity Label-MS Homo sapiens
12 GATA2  
Proximity Label-MS Homo sapiens
13 EN1  
Proximity Label-MS Homo sapiens
14 BRCA1 672
Affinity Capture-MS Homo sapiens
15 RPL10 6134
Affinity Capture-MS Homo sapiens
16 FAXC  
Affinity Capture-MS Homo sapiens
17 SOX2  
Proximity Label-MS Homo sapiens
18 MYOD1  
Proximity Label-MS Homo sapiens
19 APEX1 328
Proximity Label-MS Homo sapiens
20 CAPZB 832
Affinity Capture-MS Homo sapiens
21 ATXN7L1 222255
Affinity Capture-MS Homo sapiens
22 KLF8  
Proximity Label-MS Homo sapiens
23 KLF15  
Proximity Label-MS Homo sapiens
24 OBSL1 23363
Affinity Capture-MS Homo sapiens
25 SF3A2 8175
Co-fractionation Homo sapiens
26 IL31  
Affinity Capture-MS Homo sapiens
27 TEAD1  
Proximity Label-MS Homo sapiens
28 HINFP  
Two-hybrid Homo sapiens
29 BRD4 23476
Affinity Capture-MS Homo sapiens
30 TOMM40 10452
Co-fractionation Homo sapiens
31 MECP2 4204
Affinity Capture-MS Homo sapiens
32 USP37  
Proximity Label-MS Homo sapiens
33 KLF16  
Proximity Label-MS Homo sapiens
34 PPIB 5479
Cross-Linking-MS (XL-MS) Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
35 HIST1H4A 8359
Affinity Capture-MS Homo sapiens
36 TLX3  
Proximity Label-MS Homo sapiens
37 LDHD  
Affinity Capture-MS Homo sapiens
38 NFIX 4784
Proximity Label-MS Homo sapiens
39 CBX3 11335
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
40 CBX5 23468
Protein-peptide Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
41 LHX3  
Proximity Label-MS Homo sapiens
42 GPSM3  
Affinity Capture-MS Homo sapiens
43 PAX8  
Proximity Label-MS Homo sapiens
44 SMC1A 8243
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
45 DHX9 1660
Affinity Capture-MS Homo sapiens
46 T  
Proximity Label-MS Homo sapiens
47 EED  
Affinity Capture-MS Homo sapiens
48 KPNA5 3841
Affinity Capture-MS Homo sapiens
49 CEBPA  
Proximity Label-MS Homo sapiens
50 STAG2 10735
Affinity Capture-MS Homo sapiens
51 ARFGAP1 55738
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
52 SP100 6672
Reconstituted Complex Homo sapiens
53 CD3EAP  
Proximity Label-MS Homo sapiens
54 TLX2  
Proximity Label-MS Homo sapiens
55 PAX6  
Proximity Label-MS Homo sapiens
56 HIST1H3A 8350
Proximity Label-MS Homo sapiens
57 FANCD2  
Affinity Capture-MS Homo sapiens
58 TLX1  
Proximity Label-MS Homo sapiens
59 LMNB1 4001
Affinity Capture-MS Homo sapiens
60 SIRT7  
Affinity Capture-MS Homo sapiens
61 NR3C1 2908
Proximity Label-MS Homo sapiens
62 TFG 10342
Affinity Capture-MS Homo sapiens
63 Paxip1  
Affinity Capture-MS Mus musculus
64 HNF4A  
Proximity Label-MS Homo sapiens
65 MAU2  
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Two-hybrid Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-Western Homo sapiens
66 RPA3 6119
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
67 TOP1 7150
Affinity Capture-MS Homo sapiens
68 MED23 9439
Affinity Capture-Western Homo sapiens
69 SNW1 22938
Affinity Capture-MS Homo sapiens
70 Rpl35 66489
Affinity Capture-MS Mus musculus
71 MYB  
Proximity Label-MS Homo sapiens
72 BRD3 8019
Affinity Capture-MS Homo sapiens
73 Nipbl  
Affinity Capture-MS Mus musculus
74 CCDC8  
Affinity Capture-MS Homo sapiens
75 Cbx1  
Affinity Capture-MS Mus musculus
76 PPT1 5538
Co-fractionation Homo sapiens
77 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
78 FASN 2194
Negative Genetic Homo sapiens
79 PARP1 142
Proximity Label-MS Homo sapiens
80 CENPA  
Proximity Label-MS Homo sapiens
81 CDK8 1024
Co-purification Homo sapiens
82 NMB  
Affinity Capture-MS Homo sapiens
83 RPA1 6117
Affinity Capture-MS Homo sapiens
84 HMGN5 79366
Affinity Capture-MS Homo sapiens
85 PRSS23 11098
Two-hybrid Homo sapiens
86 CDK6 1021
Biochemical Activity Homo sapiens
87 PAX9  
Proximity Label-MS Homo sapiens
88 MKI67  
Affinity Capture-MS Homo sapiens
89 KLF5  
Proximity Label-MS Homo sapiens
90 RAD21 5885
Co-fractionation Homo sapiens
91 CIT 11113
Affinity Capture-MS Homo sapiens
92 MLLT3 4300
Affinity Capture-MS Homo sapiens
93 ERG  
Proximity Label-MS Homo sapiens
94 HNF1B  
Proximity Label-MS Homo sapiens
95 KRAS 3845
Negative Genetic Homo sapiens
96 Mau2  
Affinity Capture-MS Mus musculus
97 AR 367
Affinity Capture-Western Homo sapiens
Proximity Label-MS Homo sapiens
98 SSRP1 6749
Affinity Capture-MS Homo sapiens
99 SP7  
Proximity Label-MS Homo sapiens
100 CDC5L 988
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which NIPBL is involved
PathwayEvidenceSource
Cell Cycle TAS Reactome
Cell Cycle, Mitotic TAS Reactome
Cohesin Loading onto Chromatin TAS Reactome
M Phase TAS Reactome
Mitotic Telophase/Cytokinesis TAS Reactome





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