Gene description for ARID1B
Gene name AT rich interactive domain 1B (SWI1-like)
Gene symbol ARID1B
Other names/aliases 6A3-5
BAF250B
BRIGHT
DAN15
ELD/OSA1
MRD12
OSA2
P250R
Species Homo sapiens
 Database cross references - ARID1B
ExoCarta ExoCarta_57492
Vesiclepedia VP_57492
Entrez Gene 57492
HGNC 18040
MIM 614556
UniProt Q8NFD5  
 ARID1B identified in exosomes derived from the following tissue/cell type
Hepatocellular carcinoma cells 26054723    
 Gene ontology annotations for ARID1B
Molecular Function
    DNA binding GO:0003677 IEA
    transcription coactivator activity GO:0003713 NAS
    protein binding GO:0005515 IPI
    nucleosome binding GO:0031491 IBA
Biological Process
    response to ischemia GO:0002931 IEA
    chromatin remodeling GO:0006338 NAS
    regulation of transcription by RNA polymerase II GO:0006357 IBA
    regulation of transcription by RNA polymerase II GO:0006357 NAS
    nervous system development GO:0007399 IEA
    regulation of mitotic metaphase/anaphase transition GO:0030071 NAS
    positive regulation of T cell differentiation GO:0045582 NAS
    positive regulation of cell differentiation GO:0045597 NAS
    positive regulation of myoblast differentiation GO:0045663 NAS
    transcription initiation-coupled chromatin remodeling GO:0045815 NAS
    positive regulation of DNA-templated transcription GO:0045893 IBA
    regulation of G0 to G1 transition GO:0070316 NAS
    cellular response to angiotensin GO:1904385 IEA
    regulation of G1/S transition of mitotic cell cycle GO:2000045 NAS
    positive regulation of double-strand break repair GO:2000781 NAS
    regulation of nucleotide-excision repair GO:2000819 NAS
Subcellular Localization
    chromatin GO:0000785 NAS
    nucleoplasm GO:0005654 IBA
    nucleoplasm GO:0005654 IDA
    nucleoplasm GO:0005654 TAS
    cytosol GO:0005829 IDA
    plasma membrane GO:0005886 IDA
    SWI/SNF complex GO:0016514 IBA
    SWI/SNF complex GO:0016514 IDA
    SWI/SNF complex GO:0016514 NAS
    brahma complex GO:0035060 NAS
    npBAF complex GO:0071564 NAS
    nBAF complex GO:0071565 IBA
    nBAF complex GO:0071565 NAS
    bBAF complex GO:0140092 NAS
 Experiment description of studies that identified ARID1B in exosomes
1
Experiment ID 235
MISEV standards
EM
Biophysical techniques
TSG101|Alix|HSC70|GAPDH
Enriched markers
HSP90B1
Negative markers
qNano
Particle analysis
Identified molecule mRNA
Identification method RNA Sequencing
PubMed ID 26054723    
Organism Homo sapiens
Experiment description Hepatocellular carcinoma-derived exosomes promote motility of immortalized hepatocyte through transfer of oncogenic proteins and RNAs
Authors "He M, Qin H, Poon TC, Sze SC, Ding X, Co NN, Ngai SM, Chan TF, Wong N"
Journal name Carcinogenesis
Publication year 2015
Sample Hepatocellular carcinoma cells
Sample name HKCI-8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Sucrose density gradient
Flotation density 1.13-1.19 g/mL
Molecules identified in the study Protein
RNA
Methods used in the study Western blotting
Mass spectrometry
RT-PCR
RNA Sequencing
 Protein-protein interactions for ARID1B
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 GATA1  
Proximity Label-MS Homo sapiens
2 HIST2H2BE 8349
Reconstituted Complex Homo sapiens
3 RASSF8 11228
Affinity Capture-MS Homo sapiens
4 TCEB1 6921
Reconstituted Complex Homo sapiens
Affinity Capture-Western Homo sapiens
5 IRF4  
Proximity Label-MS Homo sapiens
6 FEV  
Proximity Label-MS Homo sapiens
7 NFIB  
Proximity Label-MS Homo sapiens
8 Bcl7b  
Affinity Capture-MS Mus musculus
9 LHX2  
Proximity Label-MS Homo sapiens
10 GATA2  
Proximity Label-MS Homo sapiens
11 ACTC1 70
Affinity Capture-MS Homo sapiens
12 PAX2  
Proximity Label-MS Homo sapiens
13 SMARCE1 6605
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
14 EYA2  
Proximity Label-MS Homo sapiens
15 CAND1 55832
Affinity Capture-MS Homo sapiens
16 SMARCD2 6603
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
17 SOX10  
Proximity Label-MS Homo sapiens
18 GLTSCR1 29998
Affinity Capture-MS Homo sapiens
19 MYOD1  
Proximity Label-MS Homo sapiens
20 DPF1  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
21 RNF10  
Affinity Capture-MS Homo sapiens
22 BCL7B  
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
23 ZNF485  
Affinity Capture-MS Homo sapiens
24 SMARCA1 6594
Affinity Capture-MS Homo sapiens
25 NUP35 129401
Proximity Label-MS Homo sapiens
26 STK11IP 114790
Affinity Capture-MS Homo sapiens
27 GCM1  
Proximity Label-MS Homo sapiens
28 TEAD1  
Proximity Label-MS Homo sapiens
29 ETV4  
Proximity Label-MS Homo sapiens
30 KLF4  
Proximity Label-MS Homo sapiens
31 NAGK 55577
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
32 LHX4  
Proximity Label-MS Homo sapiens
33 MECP2 4204
Affinity Capture-MS Homo sapiens
34 TLX3  
Proximity Label-MS Homo sapiens
35 MYCN  
Affinity Capture-MS Homo sapiens
36 TEX13B  
Affinity Capture-MS Homo sapiens
37 ASF1A 25842
Proximity Label-MS Homo sapiens
38 SMARCB1 6598
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
39 SMARCA2 6595
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
40 PHF10  
Affinity Capture-MS Homo sapiens
41 SOX17  
Proximity Label-MS Homo sapiens
42 RBX1 9978
Affinity Capture-Western Homo sapiens
43 QPRT 23475
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
44 BRD9 65980
Affinity Capture-MS Homo sapiens
45 TBR1  
Proximity Label-MS Homo sapiens
46 NFIX 4784
Proximity Label-MS Homo sapiens
47 SMARCA4 6597
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Co-fractionation Homo sapiens
48 LHX1  
Proximity Label-MS Homo sapiens
49 NFIA 4774
Proximity Label-MS Homo sapiens
50 YAP1 10413
Proximity Label-MS Homo sapiens
51 GATA3  
Proximity Label-MS Homo sapiens
52 DPF2  
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
53 KDM5B  
Affinity Capture-MS Homo sapiens
54 LHX3  
Proximity Label-MS Homo sapiens
55 PAX8  
Proximity Label-MS Homo sapiens
56 SMAD2 4087
Affinity Capture-MS Homo sapiens
57 ACTB 60
Affinity Capture-MS Homo sapiens
58 FBLN5 10516
Affinity Capture-MS Homo sapiens
59 T  
Proximity Label-MS Homo sapiens
60 SS18L1  
Affinity Capture-MS Homo sapiens
61 ACTG1 71
Affinity Capture-MS Homo sapiens
62 BCL7C  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
63 SOX7  
Proximity Label-MS Homo sapiens
64 BRD7  
Affinity Capture-MS Homo sapiens
65 TLX2  
Proximity Label-MS Homo sapiens
66 PAX6  
Proximity Label-MS Homo sapiens
67 ACTL6A 86
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
68 SMARCD1 6602
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
69 EPAS1  
Affinity Capture-MS Homo sapiens
70 PPARG 5468
Proximity Label-MS Homo sapiens
71 HOXB2  
Proximity Label-MS Homo sapiens
72 FOXI1  
Proximity Label-MS Homo sapiens
73 EPB41L2 2037
Co-fractionation Homo sapiens
74 NR3C1 2908
Proximity Label-MS Homo sapiens
Proximity Label-MS Homo sapiens
75 FAM168A  
Affinity Capture-MS Homo sapiens
76 POU5F1  
Affinity Capture-MS Homo sapiens
77 NUP43 348995
Proximity Label-MS Homo sapiens
78 MYC  
Affinity Capture-MS Homo sapiens
79 BATF3  
Affinity Capture-MS Homo sapiens
80 SS18  
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
81 SOX15  
Proximity Label-MS Homo sapiens
82 HNF4A  
Proximity Label-MS Homo sapiens
83 PRMT5 10419
Affinity Capture-MS Homo sapiens
84 FOS 2353
Proximity Label-MS Homo sapiens
85 SS18L2  
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
86 RPA3 6119
Proximity Label-MS Homo sapiens
87 SMAD9  
Two-hybrid Homo sapiens
88 ETS1  
Proximity Label-MS Homo sapiens
89 CDC45  
Affinity Capture-MS Homo sapiens
90 PCGF1 84759
Affinity Capture-MS Homo sapiens
91 ARID1A 8289
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Negative Genetic Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
92 SOX9  
Proximity Label-MS Homo sapiens
93 NANOG  
Affinity Capture-MS Homo sapiens
94 IRF1  
Proximity Label-MS Homo sapiens
95 SOX2  
Proximity Label-MS Homo sapiens
96 TLX1  
Proximity Label-MS Homo sapiens
97 SIRT6  
Affinity Capture-MS Homo sapiens
98 ARID2  
Affinity Capture-MS Homo sapiens
99 ELF5  
Proximity Label-MS Homo sapiens
100 CUL2 8453
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
101 SMARCC1 6599
Affinity Capture-Western Homo sapiens
Affinity Capture-Western Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
102 MEN1 4221
Affinity Capture-MS Homo sapiens
103 KLF3  
Proximity Label-MS Homo sapiens
104 PBRM1 55193
Affinity Capture-MS Homo sapiens
105 SP7  
Proximity Label-MS Homo sapiens
106 PAX9  
Proximity Label-MS Homo sapiens
107 DDX58 23586
Affinity Capture-RNA Homo sapiens
108 KLF5  
Proximity Label-MS Homo sapiens
109 WWP2 11060
Affinity Capture-MS Homo sapiens
110 PAX7  
Proximity Label-MS Homo sapiens
111 HDGFRP2 84717
Affinity Capture-MS Homo sapiens
112 DPF3  
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
113 RPRD1B 58490
Affinity Capture-MS Homo sapiens
114 ERG  
Proximity Label-MS Homo sapiens
115 HNF1B  
Proximity Label-MS Homo sapiens
116 NFIC 4782
Proximity Label-MS Homo sapiens
117 AR 367
Proximity Label-MS Homo sapiens
Proximity Label-MS Homo sapiens
118 SMARCD3  
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
119 Bcl7c  
Affinity Capture-MS Mus musculus
120 BCL7A  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
121 SMARCC2 6601
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Co-fractionation Homo sapiens
122 CEBPA  
Proximity Label-MS Homo sapiens
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