Gene ontology annotations for ARFGEF2
Experiment description of studies that identified ARFGEF2 in exosomes
1
Experiment ID
489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 6
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
2
Experiment ID
490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 7
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
3
Experiment ID
491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 8
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
4
Experiment ID
492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
36408942
Organism
Rattus norvegicus
Experiment description
Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors
"Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name
Proteomics
Publication year
2023
Sample
Bone marrow mesenchymal stem cells
Sample name
BMSC - Passage 9
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
5
Experiment ID
497
MISEV standards
✘
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35931686
Organism
Homo sapiens
Experiment description
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name
Cell Death Dis
Publication year
2022
Sample
Chondrocytes
Sample name
T/C-28a2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
6
Experiment ID
498
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD151|CD63|CD81|CD82|FLOT1|FLOT2|GAPDH|LAMP1|LAMP2|RAB5A|SDCBP|TFRC|TSG101|UCHL1
Enriched markers
✘
Negative markers
✔
NTA
Particle analysis
Identified molecule
Protein
Identification method
Mass spectrometry
PubMed ID
35931686
Organism
Homo sapiens
Experiment description
Extracellular vesicles enriched in connexin 43 promote a senescent phenotype in bone and synovial cells contributing to osteoarthritis progression
Authors
"Varela-EirÃÂn M, Carpintero-Fernández P, Guitián-Caamaño A, Varela-Vázquez A, GarcÃÂa-Yuste A, Sánchez-Temprano A, Bravo-López SB, Yañez-Cabanas J, Fonseca E, Largo R, Mobasheri A, Caeiro JR, Mayán MD."
Journal name
Cell Death Dis
Publication year
2022
Sample
Chondrocytes
Sample name
T/C-28a2
Isolation/purification methods
Differential centrifugation Filtration Ultracentrifugation
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Western blotting Mass spectometry
7
Experiment ID
207
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23161513
Organism
Homo sapiens
Experiment description
Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors
"Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name
Mol Cell Proteomics
Publication year
2012
Sample
Colorectal cancer cells
Sample name
DKO-1
Isolation/purification methods
Differential centrifugation Filtration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
8
Experiment ID
208
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23161513
Organism
Homo sapiens
Experiment description
Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors
"Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name
Mol Cell Proteomics
Publication year
2012
Sample
Colorectal cancer cells
Sample name
Dks-8
Isolation/purification methods
Differential centrifugation Filtration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
9
Experiment ID
209
MISEV standards
✘
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
23161513
Organism
Homo sapiens
Experiment description
Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors
"Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name
Mol Cell Proteomics
Publication year
2012
Sample
Colorectal cancer cells
Sample name
DLD-1
Isolation/purification methods
Differential centrifugation Filtration
Flotation density
-
Molecules identified in the study
Protein
Methods used in the study
Mass spectrometry
10
Experiment ID
1203
MISEV standards
✔
EM
Biophysical techniques
✔
SDCBP|FLOT1|CD9|CD81|CD63|EPCAM|GAPDH|LAMP1|TFRC|CD151|CD82|LAMP2|RAB35|TSG101|FLOT2|RAB5B|ICAM1|RAB5A
Enriched markers
✘
Negative markers
✘
Particle analysis
Identified molecule
protein
Identification method
Mass spectrometry
PubMed ID
34887515
Organism
Homo sapiens
Experiment description
Supermeres are functional extracellular nanoparticles replete with disease biomarkers and therapeutic targets
Authors
"Zhang Q, Jeppesen DK, Higginbotham JN, Graves-Deal R, Trinh VQ, Ramirez MA, Sohn Y, Neininger AC, Taneja N, McKinley ET, Niitsu H, Cao Z, Evans R, Glass SE, Ray KC, Fissell WH, Hill S, Rose KL, Huh WJ, Washington MK, Ayers GD, Burnette DT, Sharma S, Rome LH, Franklin JL, Lee YA, Liu Q, Coffey RJ."
Journal name
Nat Cell Biol
Publication year
2021
Sample
Colorectal cancer cells
Sample name
DiFi
Isolation/purification methods
Differential centrifugation Filtration Centrifugal ultrafiltration Ultracentrifugation OptiPrep density gradient centrifugation
Flotation density
-
Molecules identified in the study
Protein miRNA
Methods used in the study
Western blotting Mass spectrometry RNA sequencing
11
Experiment ID
226
MISEV standards
✔
EM
Biophysical techniques
✔
GAPDH|CD9|FLOT1
Enriched markers
✔
LMNA|H2AFX|ATP5A1|TOMM20
Negative markers
✘
Particle analysis
Identified molecule
mRNA
Identification method
Small RNA sequencing (Illumina HiSeq 2000 (Solexa)
PubMed ID
26027894
Organism
Homo sapiens
Experiment description
"Quantitative and qualitative analysis of small RNAs in human endothelial cells and exosomes provides insights into localized RNA processing, degradation and sorting"
Authors
"Bas W. M. van Balkom, Almut S. Eisele, D. Michiel Pegtel, Sander Bervoets, Marianne C. Verhaar"
Journal name
Journal of Extracellular Vesicles
Publication year
2015
Sample
Endothelial cells
Sample name
HMEC-1
Isolation/purification methods
Differential ultracentrifugation Sucrose density gradient
Flotation density
1.10 g/mL
Molecules identified in the study
miRNA Protein snoRNA lncRNA yRNA snRNA mRNA ncRNA mtRNA vtRNA scaRNA lincRNA
Methods used in the study
Small RNA sequencing (Illumina HiSeq 2000 (Solexa) Western blotting
Protein-protein interactions for ARFGEF2
Protein Interactor
ExoCarta ID
Identification method
PubMed
Species
1
SGCA
Affinity Capture-MS
Homo sapiens
2
FAM131B
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
3
AKAP10
11216
Affinity Capture-MS
Homo sapiens
4
LAMP3
Affinity Capture-MS
Homo sapiens
Proximity Label-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
5
HLA-E
3133
Affinity Capture-MS
Homo sapiens
6
KRT73
319101
Affinity Capture-MS
Homo sapiens
7
PDCD1
Affinity Capture-MS
Homo sapiens
8
DNAJB2
3300
Affinity Capture-MS
Homo sapiens
9
PRMT6
Affinity Capture-MS
Homo sapiens
10
FPR1
Affinity Capture-MS
Homo sapiens
11
TMEM9B
56674
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
12
LAMP2
3920
Proximity Label-MS
Homo sapiens
13
EDNRB
1910
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
14
KLRB1
Affinity Capture-MS
Homo sapiens
15
PSMD4
5710
Affinity Capture-MS
Homo sapiens
16
PRPF40A
55660
Two-hybrid
Homo sapiens
17
ANKMY2
57037
Co-fractionation
Homo sapiens
18
HLA-B
3106
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
19
MRPL23
6150
Affinity Capture-MS
Homo sapiens
20
KCNH4
Affinity Capture-MS
Homo sapiens
21
CLEC2B
Affinity Capture-MS
Homo sapiens
22
STX7
8417
Proximity Label-MS
Homo sapiens
23
PSMC6
5706
Affinity Capture-MS
Homo sapiens
24
STX6
10228
Proximity Label-MS
Homo sapiens
25
ITGA8
8516
Affinity Capture-MS
Homo sapiens
26
ITFG3
83986
Affinity Capture-MS
Homo sapiens
27
LDLRAD4
Affinity Capture-MS
Homo sapiens
28
RAB35
11021
Proximity Label-MS
Homo sapiens
29
CSNK2B
1460
Affinity Capture-MS
Homo sapiens
30
GYPB
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
31
NHLH2
Affinity Capture-MS
Homo sapiens
32
GPR17
2840
Affinity Capture-MS
Homo sapiens
33
LAMTOR1
55004
Proximity Label-MS
Homo sapiens
34
VSIG4
Affinity Capture-MS
Homo sapiens
35
BSG
682
Affinity Capture-MS
Homo sapiens
36
CTDP1
9150
Affinity Capture-MS
Homo sapiens
37
RAB4A
5867
Proximity Label-MS
Homo sapiens
38
DTNBP1
Affinity Capture-MS
Homo sapiens
39
PBXIP1
57326
Affinity Capture-MS
Homo sapiens
40
PSMD2
5708
Affinity Capture-MS
Homo sapiens
41
VCP
7415
Affinity Capture-MS
Homo sapiens
42
GPR182
Affinity Capture-MS
Homo sapiens
43
RAB7A
7879
Proximity Label-MS
Homo sapiens
44
PRKAR2A
5576
Reconstituted Complex
Homo sapiens
Two-hybrid
Homo sapiens
45
SDF4
51150
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
46
MRAP2
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
47
ELOVL5
60481
Proximity Label-MS
Homo sapiens
48
HSPB8
26353
Affinity Capture-MS
Homo sapiens
49
UPK2
7379
Affinity Capture-MS
Homo sapiens
50
CD40
958
Affinity Capture-MS
Homo sapiens
51
NUP88
4927
Co-fractionation
Homo sapiens
52
CYB5B
80777
Affinity Capture-MS
Homo sapiens
53
CDC73
Co-fractionation
Homo sapiens
54
SIGLECL1
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
55
ICAM1
3383
Affinity Capture-MS
Homo sapiens
56
CD79B
974
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
57
PSMD13
5719
Affinity Capture-MS
Homo sapiens
58
LRRC25
Affinity Capture-MS
Homo sapiens
59
NPTN
27020
Affinity Capture-MS
Homo sapiens
60
ARFGEF1
10565
Co-fractionation
Homo sapiens
Affinity Capture-Western
Homo sapiens
Affinity Capture-MS
Homo sapiens
Negative Genetic
Homo sapiens
Affinity Capture-Western
Homo sapiens
Affinity Capture-MS
Homo sapiens
61
PRKAR1A
5573
Reconstituted Complex
Homo sapiens
Affinity Capture-Western
Homo sapiens
Reconstituted Complex
Homo sapiens
Affinity Capture-Western
Homo sapiens
Two-hybrid
Homo sapiens
62
MGARP
Affinity Capture-MS
Homo sapiens
63
CUL3
8452
Affinity Capture-MS
Homo sapiens
64
CLEC4A
Affinity Capture-MS
Homo sapiens
65
MADCAM1
Affinity Capture-MS
Homo sapiens
66
SPACA1
81833
Affinity Capture-MS
Homo sapiens
67
OCIAD1
54940
Affinity Capture-MS
Homo sapiens
68
C3orf18
Affinity Capture-MS
Homo sapiens
69
MYC
Dosage Lethality
Homo sapiens
70
RPA3
6119
Proximity Label-MS
Homo sapiens
71
RAB9A
9367
Proximity Label-MS
Homo sapiens
72
CD244
51744
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
73
EBAG9
9166
Proximity Label-MS
Homo sapiens
74
HAX1
Affinity Capture-MS
Homo sapiens
75
PNPLA2
Two-hybrid
Homo sapiens
Affinity Capture-Western
Homo sapiens
76
KRT16
3868
Affinity Capture-MS
Homo sapiens
77
MYCBP
26292
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
78
PLEKHA4
57664
Affinity Capture-MS
Homo sapiens
79
STK16
8576
Affinity Capture-MS
Homo sapiens
80
TMEM9
252839
Affinity Capture-MS
Homo sapiens
81
OPALIN
Affinity Capture-MS
Homo sapiens
82
MFSD4
Affinity Capture-MS
Homo sapiens
83
CLEC2D
Affinity Capture-MS
Homo sapiens
84
DPY30
84661
Affinity Capture-MS
Homo sapiens
85
Itch
16396
Reconstituted Complex
Mus musculus
86
SLAMF1
6504
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
87
NUP98
4928
Co-fractionation
Homo sapiens
88
TMEM171
Affinity Capture-MS
Homo sapiens
89
TUBB6
84617
Affinity Capture-MS
Homo sapiens
90
GZMH
Affinity Capture-MS
Homo sapiens
91
FLNA
2316
Co-localization
Homo sapiens
92
RAB11A
8766
Proximity Label-MS
Homo sapiens
93
ORAI1
84876
Affinity Capture-MS
Homo sapiens
94
FLNC
2318
Co-fractionation
Homo sapiens
95
SNW1
22938
Affinity Capture-MS
Homo sapiens
96
PAF1
54623
Co-fractionation
Homo sapiens
97
VASN
114990
Affinity Capture-MS
Homo sapiens
98
PSMD3
5709
Affinity Capture-MS
Homo sapiens
99
FKBP2
2286
Affinity Capture-Western
Homo sapiens
100
CSGALNACT1
55790
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
Affinity Capture-MS
Homo sapiens
101
HLA-C
3107
Affinity Capture-MS
Homo sapiens
View the network
image/svg+xml
Pathways in which ARFGEF2 is involved