Experiment description of studies that identified Fxr1 in exosomes

1 Experiment ID 907 MISEV standards ✔ EM Biophysical techniques ✔ Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a Enriched markers ✔ HSPA5 Negative markers ✔ NTA Particle analysis Identified molecule Protein Identification method Mass spectrometry PubMed ID 37309723     Organism Mus musculus Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S." Journal name Proteomics Publication year 2023 Sample Colon cancer cells Sample name C26 Isolation/purification methods Differential centrifugation Ultracentrifugation Flotation density - Molecules identified in the study Protein Methods used in the study Western blotting Mass spectrometry

2 Experiment ID 908 MISEV standards ✔ EM Biophysical techniques ✔ Tsg101|Sdcbp|Cd151|Gapdh|Lamp2|Cd81|Cd82|Cd9|Cd63|Cd80|Flot2|Tfrc|Rab35|Rab5a Enriched markers ✔ HSPA5 Negative markers ✔ NTA Particle analysis Identified molecule Protein Identification method Mass spectrometry PubMed ID 37309723     Organism Mus musculus Experiment description Proteomic analysis of the small extracellular vesicles and soluble secretory proteins from cachexia inducing and non-inducing cancer cells Authors "Chitti SV, Kang T, Fonseka P, Marzan AL, Stewart S, Shahi S, Bramich K, Ang CS, Pathan M, Gummadi S, Mathivanan S." Journal name Proteomics Publication year 2023 Sample T-cell lymphoma cells Sample name EL4 Isolation/purification methods Differential centrifugation Ultracentrifugation Flotation density - Molecules identified in the study Protein Methods used in the study Western blotting Mass spectrometry

Protein-protein interactions for Fxr1

Protein Interactor ExoCarta ID Identification method PubMed Species 1 Tdrd3   Affinity Capture-MS Mus musculus Co-fractionation Mus musculus 2 Sec16a   Affinity Capture-MS Mus musculus 3 Edc4   Affinity Capture-MS Mus musculus 4 Usp9x 22284 Affinity Capture-MS Mus musculus 5 Rcor2   Affinity Capture-MS Mus musculus 6 Ttc3   Affinity Capture-MS Mus musculus 7 Ebf3   Affinity Capture-MS Mus musculus 8 Ap2b1 71770 Affinity Capture-MS Mus musculus 9 Smarca4   Affinity Capture-MS Mus musculus 10 Dnajc9   Affinity Capture-MS Mus musculus 11 Fmr1   Affinity Capture-MS Mus musculus Affinity Capture-MS Mus musculus 12 Farsb 23874 Affinity Capture-MS Mus musculus 13 Hnrnpu 51810 Affinity Capture-MS Mus musculus 14 Soga1   Affinity Capture-MS Mus musculus 15 Pura 19290 Affinity Capture-MS Mus musculus 16 Thrap3 230753 Affinity Capture-MS Mus musculus 17 Rps6 20104 Co-fractionation Mus musculus 18 Eps15l1   Affinity Capture-MS Mus musculus 19 Elavl2   Affinity Capture-MS Mus musculus 20 Ctnna1 12385 Affinity Capture-MS Mus musculus 21 Top3b   Affinity Capture-MS Mus musculus 22 Caprin1 53872 Affinity Capture-MS Mus musculus 23 Spats2   Affinity Capture-MS Mus musculus 24 Exog   Affinity Capture-MS Mus musculus 25 Cenpf   Affinity Capture-MS Mus musculus 26 Cnot1   Affinity Capture-MS Mus musculus 27 Akap9   Affinity Capture-MS Mus musculus 28 Ncor2   Affinity Capture-MS Mus musculus 29 Ubap2   Affinity Capture-MS Mus musculus 30 Elavl1 15568 Affinity Capture-MS Mus musculus 31 Ina   Affinity Capture-MS Mus musculus 32 Snw1   Affinity Capture-MS Mus musculus 33 Trp53bp1   Affinity Capture-MS Mus musculus 34 Cep170   Affinity Capture-MS Mus musculus 35 Ccar1   Affinity Capture-MS Mus musculus 36 Hnrnpk 15387 Affinity Capture-MS Mus musculus 37 Lmtk3   Affinity Capture-MS Mus musculus 38 Nacc1   Affinity Capture-MS Mus musculus 39 Myef2 17876 Affinity Capture-MS Mus musculus 40 Atg16l1   Affinity Capture-MS Mus musculus 41 Gprasp1   Affinity Capture-MS Mus musculus 42 Gsk3b   Affinity Capture-MS Mus musculus 43 Git2   Affinity Capture-MS Mus musculus 44 Kif2a 16563 Affinity Capture-MS Mus musculus 45 Nup153   Affinity Capture-MS Mus musculus 46 Farsa   Affinity Capture-MS Mus musculus 47 Tnik   Affinity Capture-MS Mus musculus 48 Pde4dip   Affinity Capture-MS Mus musculus 49 Ankfy1 11736 Affinity Capture-MS Mus musculus 50 Tcof1   Affinity Capture-MS Mus musculus 51 Ncor1   Affinity Capture-MS Mus musculus 52 Ctnnb1 12387 Affinity Capture-MS Mus musculus 53 Ilf2 67781 Affinity Capture-MS Mus musculus 54 Vim 22352 Affinity Capture-MS Mus musculus 55 Nefm 18040 Affinity Capture-MS Mus musculus 56 Mdk   Affinity Capture-MS Mus musculus 57 Zfp219   Affinity Capture-MS Mus musculus 58 Sec24c   Affinity Capture-MS Mus musculus 59 Rangap1   Affinity Capture-MS Mus musculus 60 Ctcf 13018 Affinity Capture-MS Mus musculus 61 Pabpc1 18458 Affinity Capture-MS Mus musculus 62 Itsn1 16443 Affinity Capture-MS Mus musculus 63 Epb4.1l3 13823 Affinity Capture-MS Mus musculus 64 Ccar2   Affinity Capture-MS Mus musculus 65 Gtpbp4   Affinity Capture-MS Mus musculus 66 Rdx 19684 Affinity Capture-MS Mus musculus 67 Nanog   Affinity Capture-MS Mus musculus 68 Golga3   Affinity Capture-MS Mus musculus 69 Hnrnpm 76936 Affinity Capture-MS Mus musculus 70 Arhgef2   Affinity Capture-MS Mus musculus 71 Cdh2 12558 Affinity Capture-MS Mus musculus 72 Traf3   Proximity Label-MS Mus musculus 73 Sphkap   Affinity Capture-MS Mus musculus 74 Pak2 224105 Affinity Capture-MS Mus musculus 75 Nufip2   Two-hybrid Mus musculus 76 Fyco1   Affinity Capture-MS Mus musculus 77 Fxr2   Affinity Capture-MS Mus musculus 78 Mycbp2 105689 Affinity Capture-MS Mus musculus Affinity Capture-MS Mus musculus 79 Trim28 21849 Affinity Capture-MS Mus musculus 80 Hnrnpul2 68693 Affinity Capture-MS Mus musculus 81 Atf6b   Affinity Capture-MS Mus musculus 82 Ubap2l 74383 Affinity Capture-MS Mus musculus 83 Smarcc2   Affinity Capture-MS Mus musculus 84 Nop2   Affinity Capture-MS Mus musculus 85 Kpnb1 16211 Affinity Capture-MS Mus musculus 86 Alyref   Affinity Capture-MS Mus musculus 87 Srsf1 110809 Affinity Capture-MS Mus musculus 88 Pak3   Affinity Capture-MS Mus musculus 89 Mllt4   Affinity Capture-MS Mus musculus 90 Ago1 236511 Affinity Capture-MS Mus musculus 91 Kif21a   Affinity Capture-MS Mus musculus 92 Git1   Affinity Capture-MS Mus musculus 93 Map4k4 26921 Affinity Capture-MS Mus musculus 94 MKRN1 23608 Affinity Capture-MS Homo sapiens 95 Ston2   Affinity Capture-MS Mus musculus 96 Clip1   Affinity Capture-MS Mus musculus 97 Bclaf1   Affinity Capture-MS Mus musculus 98 Srpk2 20817 Affinity Capture-MS Mus musculus 99 Bub3 12237 Affinity Capture-MS Mus musculus 100 Dmrt2   Affinity Capture-MS Mus musculus 101 Nefl   Affinity Capture-MS Mus musculus 102 Ppfia3   Affinity Capture-MS Mus musculus 103 Eps15 13858 Affinity Capture-MS Mus musculus 104 Prrc2b 227723 Affinity Capture-MS Mus musculus 105 Arhgef7   Affinity Capture-MS Mus musculus 106 Dynll1 56455 Affinity Capture-MS Mus musculus 107 Bcor   Affinity Capture-MS Mus musculus 108 Nedd4 17999 Affinity Capture-MS Mus musculus 109 Eed   Affinity Capture-MS Mus musculus 110 Hspa9 15526 Affinity Capture-MS Mus musculus 111 Gm8730   Affinity Capture-MS Mus musculus 112 Camk2b 12323 Affinity Capture-MS Mus musculus 113 Golgb1   Affinity Capture-MS Mus musculus 114 Dock7   Affinity Capture-MS Mus musculus 115 Ranbp2   Affinity Capture-MS Mus musculus 116 Fancd2   Affinity Capture-MS Mus musculus 117 Camk2a   Affinity Capture-MS Mus musculus 118 Strap 20901 Affinity Capture-MS Mus musculus 119 N4bp2   Affinity Capture-MS Mus musculus 120 Wdr47   Affinity Capture-MS Mus musculus 121 Upf1 19704 Affinity Capture-MS Mus musculus 122 Elavl4   Affinity Capture-MS Mus musculus 123 Akap8   Affinity Capture-MS Mus musculus 124 Cdc5l 71702 Affinity Capture-MS Mus musculus 125 Strn 268980 Affinity Capture-MS Mus musculus 126 Dlgap1   Affinity Capture-MS Mus musculus 127 Spata13   Affinity Capture-MS Mus musculus 128 Tsc1   Affinity Capture-MS Mus musculus 129 Prrc2a   Affinity Capture-MS Mus musculus 130 Atxn1   Proximity Label-MS Mus musculus Affinity Capture-MS Mus musculus 131 Kctd13   Affinity Capture-MS Mus musculus 132 Tnr   Affinity Capture-MS Mus musculus 133 Shank3   Affinity Capture-MS Mus musculus 134 Npm1 18148 Affinity Capture-MS Mus musculus 135 Mia3   Affinity Capture-MS Mus musculus 136 Grik3   Affinity Capture-MS Mus musculus 137 Baiap2 108100 Affinity Capture-MS Mus musculus 138 Cep170b   Affinity Capture-MS Mus musculus 139 Fam120a   Affinity Capture-MS Mus musculus 140 Herc2   Affinity Capture-MS Mus musculus 141 Aak1 269774 Affinity Capture-MS Mus musculus 142 Fzr1   Affinity Capture-Western Mus musculus Affinity Capture-MS Mus musculus 143 Nat10   Affinity Capture-MS Mus musculus 144 Sbf1   Affinity Capture-MS Mus musculus 145 Rpl12 269261 Affinity Capture-MS Mus musculus 146 Senp1   Affinity Capture-MS Mus musculus 147 Ap2a2 11772 Affinity Capture-MS Mus musculus 148 Nop56 67134 Affinity Capture-MS Mus musculus 149 Ap2a1 11771 Affinity Capture-MS Mus musculus 150 Ago2 239528 Affinity Capture-MS Mus musculus 151 Zbtb7b   Affinity Capture-MS Mus musculus 152 Ccdc88a   Affinity Capture-MS Mus musculus 153 Scrib 105782 Affinity Capture-MS Mus musculus 154 Ilf3 16201 Affinity Capture-MS Mus musculus 155 Cad 69719 Affinity Capture-MS Mus musculus 156 Prrc2c 226562 Affinity Capture-MS Mus musculus 157 Ppm1h   Affinity Capture-MS Mus musculus 158 Pcm1   Affinity Capture-MS Mus musculus 159 Keap1   Affinity Capture-MS Mus musculus 160 Dnaja1 15502 Affinity Capture-MS Mus musculus 161 Dido1   Affinity Capture-MS Mus musculus 162 Tbk1   Affinity Capture-MS Mus musculus 163 Pak1   Affinity Capture-MS Mus musculus 164 FXR2 9513 Two-hybrid Homo sapiens 165 Zbtb21   Affinity Capture-MS Mus musculus 166 Kif7   Affinity Capture-MS Mus musculus View the network

Pathways in which Fxr1 is involved

No pathways found