Gene description for LIG3
Gene name ligase III, DNA, ATP-dependent
Gene symbol LIG3
Other names/aliases LIG2
Species Homo sapiens
 Database cross references - LIG3
ExoCarta ExoCarta_3980
Entrez Gene 3980
HGNC 6600
MIM 600940
UniProt P49916  
 LIG3 identified in exosomes derived from the following tissue/cell type
Thymus 23844026    
 Gene ontology annotations for LIG3
Molecular Function
    protein binding GO:0005515 IPI
    zinc ion binding GO:0008270 IEA
    DNA ligase activity GO:0003909 IDA
    DNA binding GO:0003677 IEA
    ATP binding GO:0005524 IEA
    DNA ligase (ATP) activity GO:0003910 IMP
Biological Process
    negative regulation of mitochondrial DNA replication GO:0090298 IMP
    double-strand break repair via alternative nonhomologous end joining GO:0097681 IGI
    lagging strand elongation GO:0006273 IBA
    mitochondrial DNA repair GO:0043504 IMP
    double-strand break repair via nonhomologous end joining GO:0006303 IEA
    base-excision repair GO:0006284 TAS
    double-strand break repair GO:0006302 IDA
    cell division GO:0051301 IEA
    V(D)J recombination GO:0033151 IDA
    mitochondrion organization GO:0007005 IDA
    base-excision repair, DNA ligation GO:0006288 IMP
    negative regulation of DNA recombination GO:0045910 IEA
    cell cycle GO:0007049 IEA
    DNA repair GO:0006281 TAS
    DNA biosynthetic process GO:0071897 IEA
    DNA ligation GO:0006266 IDA
Subcellular Localization
    cytoplasm GO:0005737 IBA
    nucleus GO:0005634 IDA
    nucleoplasm GO:0005654 TAS
    mitochondrion GO:0005739 IEA
    DNA ligase III-XRCC1 complex GO:0070421 IDA
    synaptonemal complex GO:0000795 IEA
 Experiment description of studies that identified LIG3 in exosomes
1
Experiment ID 217
ISEV standards
EM
EV Biophysical techniques
TSG101
EV Cytosolic markers
CD81|CD9|CD63
EV Membrane markers
EV Negative markers
NTA
EV Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23844026    
Organism Homo sapiens
Experiment description Characterization of human thymic exosomes.
Authors Skogberg G, Gudmundsdottir J, van der Post S, Sandstrom K, Bruhn S, Benson M, Mincheva-Nilsson L, Baranov V, Telemo E, Ekwall O.
Journal name PLoS One
Publication year 2013
Sample Thymus
Sample name Normal-Thymus
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
 Protein-protein interactions for LIG3
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 PNKP 11284
Affinity Capture-MS Homo sapiens
2 XRCC1  
Invivo Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Co-purification Homo sapiens
Affinity Capture-Western Homo sapiens
Reconstituted Complex Homo sapiens
Reconstituted Complex Homo sapiens
3 NEIL1  
Far Western Homo sapiens
Two-hybrid Homo sapiens
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
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