Gene description for CCDC47
Gene name coiled-coil domain containing 47
Gene symbol CCDC47
Other names/aliases GK001
MSTP041
Species Homo sapiens
 Database cross references - CCDC47
ExoCarta ExoCarta_57003
Vesiclepedia VP_57003
Entrez Gene 57003
HGNC 24856
UniProt Q96A33  
 CCDC47 identified in sEVs derived from the following tissue/cell type
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Bone marrow mesenchymal stem cells 36408942    
Breast cancer cells 34108659    
Breast cancer cells 34108659    
Breast cancer cells 34108659    
Breast cancer cells 34108659    
Colorectal cancer cells 23161513    
Colorectal cancer cells 23161513    
Colorectal cancer cells 23161513    
Embryonic kidney cells 34108659    
Embryonic kidney cells 34108659    
Embryonic kidney cells 34108659    
Foreskin fibroblasts 34108659    
Lymphoma cells 34108659    
Mammary cancer-associated fibroblasts 34108659    
Mesenchymal stem cells 36408942    
Monocytic leukemia cells 34108659    
Normal mammary epithelial cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic cancer cells 34108659    
Pancreatic duct epithalial cells 34108659    
Pancreatic duct epithalial cells 34108659    
Pluripotent stem cells 34108659    
Retinal pigment epithelial cells 35333565    
Retinal pigment epithelial cells 35333565    
T lymphocytes 34108659    
 Gene ontology annotations for CCDC47
Molecular Function
    RNA binding GO:0003723 HDA
    calcium ion binding GO:0005509 IBA
    protein binding GO:0005515 IPI
    ribosome binding GO:0043022 IDA
    protein folding chaperone GO:0044183 IDA
Biological Process
    osteoblast differentiation GO:0001649 HDA
    protein folding GO:0006457 IEA
    ER overload response GO:0006983 IEA
    post-embryonic development GO:0009791 IEA
    endoplasmic reticulum calcium ion homeostasis GO:0032469 IMP
    ERAD pathway GO:0036503 IMP
    protein insertion into ER membrane GO:0045048 IDA
    multi-pass transmembrane protein insertion into ER membrane GO:0160063 IDA
Subcellular Localization
    endoplasmic reticulum GO:0005783 IBA
    endoplasmic reticulum GO:0005783 IDA
    endoplasmic reticulum membrane GO:0005789 IDA
    membrane GO:0016020 HDA
    rough endoplasmic reticulum membrane GO:0030867 IEA
    protein folding chaperone complex GO:0101031 IPI
    multi-pass translocon complex GO:0160064 IDA
    multi-pass translocon complex GO:0160064 IPI
 Experiment description of studies that identified CCDC47 in sEVs
1
Experiment ID 489
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 6
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
2
Experiment ID 490
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
3
Experiment ID 491
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 8
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
4
Experiment ID 492
MISEV standards
✔
EM
Biophysical techniques
✔
Cd9|Cd81|Cd63|Gapdh|Sdcbp|Lamp1|Aqp1|Rab5a|Icam1|Cd82|Itga2b|Tsg101|Lamp2|Rab35|Flot1|Flot2|Cd151|Rab5b|Tfrc|Uchl1
Enriched markers
✔
Canx
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Rattus norvegicus
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Bone marrow mesenchymal stem cells
Sample name BMSC - Passage 9
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
5
Experiment ID 412
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX|ACTB
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MCF7
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
6
Experiment ID 414
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MDA-MB-231
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
7
Experiment ID 426
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MDA-MB-231 - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
8
Experiment ID 427
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Breast cancer cells
Sample name MDA-MB-231 - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
9
Experiment ID 207
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors "Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name DKO-1
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
10
Experiment ID 208
MISEV standards
✔
EM
Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors "Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name Dks-8
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
11
Experiment ID 209
MISEV standards
✘ Biophysical techniques
✔
TSG101|HSP70|FLOT1
Enriched markers
✔
VDAC
Negative markers
✔
NTA
Particle analysis
Identified molecule protein
Identification method Mass spectrometry
PubMed ID 23161513    
Organism Homo sapiens
Experiment description Proteomic analysis of exosomes from mutant KRAS colon cancer cells identifies intercellular transfer of mutant KRAS.
Authors "Demory Beckler M, Higginbotham JN, Franklin JL, Ham AJ, Halvey PJ, Imasuen IE, Whitwell C, Li M, Liebler DC, Coffey RJ."
Journal name Mol Cell Proteomics
Publication year 2012
Sample Colorectal cancer cells
Sample name DLD-1
Isolation/purification methods Differential centrifugation
Filtration
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
12
Experiment ID 407
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|CD81|SDCBP|TSG101|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
13
Experiment ID 419
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
14
Experiment ID 419
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
15
Experiment ID 420
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
16
Experiment ID 420
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Embryonic kidney cells
Sample name HEK293T - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
17
Experiment ID 405
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|CD81|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Foreskin fibroblasts
Sample name BJ
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
18
Experiment ID 417
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD63|SDCBP|LAMP1|CD9|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX|ACTB
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Lymphoma cells
Sample name Raji
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
19
Experiment ID 411
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Mammary cancer-associated fibroblasts
Sample name mCAF
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
20
Experiment ID 488
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD81|CD63|GAPDH|SDCBP|LAMP1|TFRC|UCHL1|FLOT2|LAMP2|FLOT1|ICAM1|RAB5B|CD151|RAB35|TSG101|RAB5A|CD82
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 36408942    
Organism Homo sapiens
Experiment description Quantitative proteomic analysis of exosomes from umbilical cord mesenchymal stem cells and rat bone marrow stem cells
Authors "Xu X, Yin F, Guo M, Gan G, Lin G, Wen C, Wang J, Song P, Wang J, Qi ZQ, Zhong CQ."
Journal name Proteomics
Publication year 2023
Sample Mesenchymal stem cells
Sample name UCMSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectometry
21
Experiment ID 418
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Monocytic leukemia cells
Sample name THP-1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
22
Experiment ID 413
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Normal mammary epithelial cells
Sample name MCF10A
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
23
Experiment ID 406
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35|CD81
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name BxPC3
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
24
Experiment ID 415
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name PANC-1
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
25
Experiment ID 434
MISEV standards
✘ Biophysical techniques
✔
SDCBP|FLOT1|CD81|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name PANC-1 - Exo-rich fractions 7-10 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Size exclusion chromatography
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
26
Experiment ID 435
MISEV standards
✘ Biophysical techniques
✔
CD81|SDCBP|FLOT1|CD9|CD151|FLOT2|TSG101|LAMP1|TFRC|RAB5A|RAB35|GAPDH|UCHL1|ICAM1
Enriched markers
✔
CANX
Negative markers
✘ Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic cancer cells
Sample name PANC-1 - Exo-rich fractions 1-6 pooled
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
OptiPrep density gradient centrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Mass spectrometry
27
Experiment ID 408
MISEV standards
✔
EM
Biophysical techniques
✔
CD9|CD63|CD81|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX|ACTB
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic duct epithalial cells
Sample name HPDE
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
28
Experiment ID 409
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD63|SDCBP|LAMP1|CD9|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pancreatic duct epithalial cells
Sample name HPNE
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
29
Experiment ID 416
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD9|CD63|SDCBP|LAMP1|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample Pluripotent stem cells
Sample name PSC
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
30
Experiment ID 834
MISEV standards
✔
EM
Biophysical techniques
✔
LAMP2|CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35333565    
Organism Homo sapiens
Experiment description LAMP2A regulates the loading of proteins into exosomes
Authors "Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name Sci Adv
Publication year 2022
Sample Retinal pigment epithelial cells
Sample name ARPE-19
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
31
Experiment ID 835
MISEV standards
✔
EM
Biophysical techniques
✔
CD63|FLOT1|ITGA2B|ICAM1|CD9|CD151|TFRC|RAB5A|GAPDH|AQP1|TSG101
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 35333565    
Organism Homo sapiens
Experiment description LAMP2A regulates the loading of proteins into exosomes
Authors "Ferreira JV, da Rosa Soares A, Ramalho J, Máximo Carvalho C, Cardoso MH, Pintado P, Carvalho AS, Beck HC, Matthiesen R, Zuzarte M, Girão H, van Niel G, Pereira P"
Journal name Sci Adv
Publication year 2022
Sample Retinal pigment epithelial cells
Sample name ARPE-19
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
Methods used in the study Western blotting
Mass spectrometry
32
Experiment ID 410
MISEV standards
✔
EM
Biophysical techniques
✔
CD81|CD63|SDCBP|LAMP1|CD9|GAPDH|FLOT1|TFRC|FLOT2|TSG101|RAB35
Enriched markers
✔
CANX
Negative markers
✔
NTA
Particle analysis
Identified molecule Protein
Identification method Mass spectrometry
PubMed ID 34108659    
Organism Homo sapiens
Experiment description Quantitative Proteomics Identifies the Core Proteome of Exosomes with Syntenin-1 as the highest abundant protein and a Putative Universal Biomarker
Authors "Kugeratski FG, Hodge K, Lilla S, McAndrews KM, Zhou X, Hwang RF, Zanivan S, Kalluri R."
Journal name Nat Cell Biol
Publication year 2021
Sample T lymphocytes
Sample name Jurkat
Isolation/purification methods Differential centrifugation
Filtration
Ultracentrifugation
Flotation density -
Molecules identified in the study Protein
mRNA
Methods used in the study RT-qPCR
Western blotting
Mass spectrometry
Flow cytometry
 Protein-protein interactions for CCDC47
  Protein Interactor ExoCarta ID Identification method PubMed Species
1 SEC22B 9554
Affinity Capture-MS Homo sapiens
2 GJD3  
Proximity Label-MS Homo sapiens
3 STT3A 3703
Affinity Capture-MS Homo sapiens
4 C1orf27 54953
Affinity Capture-MS Homo sapiens
5 SRPRB 58477
Affinity Capture-MS Homo sapiens
6 JPH1 56704
Affinity Capture-MS Homo sapiens
7 SLC2A1 6513
Affinity Capture-MS Homo sapiens
8 POMGNT2  
Affinity Capture-MS Homo sapiens
9 CENPA  
Proximity Label-MS Homo sapiens
10 PTRH2 51651
Affinity Capture-MS Homo sapiens
11 SMPD4 55627
Affinity Capture-MS Homo sapiens
12 FAM174A 345757
Affinity Capture-MS Homo sapiens
13 DGKE  
Affinity Capture-MS Homo sapiens
14 TIMM23 100287932
Affinity Capture-MS Homo sapiens
15 MARCH5  
Proximity Label-MS Homo sapiens
16 C10orf35  
Affinity Capture-MS Homo sapiens
17 NUS1  
Affinity Capture-MS Homo sapiens
18 MANBAL 63905
Affinity Capture-MS Homo sapiens
19 COMT 1312
Affinity Capture-MS Homo sapiens
20 ERMP1 79956
Affinity Capture-MS Homo sapiens
21 SLC25A46 91137
Proximity Label-MS Homo sapiens
22 LMAN2 10960
Affinity Capture-MS Homo sapiens
23 PRTN3 5657
Affinity Capture-MS Homo sapiens
24 Cct4 12464
Affinity Capture-MS Mus musculus
25 GPX8 493869
Affinity Capture-MS Homo sapiens
26 MLEC 9761
Affinity Capture-MS Homo sapiens
27 DHDH  
Affinity Capture-MS Homo sapiens
28 EMC1 23065
Affinity Capture-MS Homo sapiens
29 EMC9  
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
30 NOMO1 23420
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
31 SEC61A2 55176
Affinity Capture-MS Homo sapiens
32 ADPGK 83440
Affinity Capture-MS Homo sapiens
33 JAGN1 84522
Affinity Capture-MS Homo sapiens
34 TMTC3 160418
Affinity Capture-MS Homo sapiens
35 IRF7  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
36 BVES  
Affinity Capture-MS Homo sapiens
37 AKAP1 8165
Proximity Label-MS Homo sapiens
38 PARP16 54956
Affinity Capture-MS Homo sapiens
39 CLCC1 23155
Affinity Capture-MS Homo sapiens
40 NUDC 10726
Cross-Linking-MS (XL-MS) Homo sapiens
41 OGT 8473
Reconstituted Complex Homo sapiens
42 RPL31 6160
Proximity Label-MS Homo sapiens
43 PIGT 51604
Affinity Capture-MS Homo sapiens
44 CCDC107  
Affinity Capture-MS Homo sapiens
45 PIGS 94005
Affinity Capture-MS Homo sapiens
46 SEC61B 10952
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
47 SSR4 6748
Affinity Capture-MS Homo sapiens
48 REEP5 7905
Proximity Label-MS Homo sapiens
49 CDS2 8760
Affinity Capture-MS Homo sapiens
50 DNAJB14  
Affinity Capture-MS Homo sapiens
51 TMPO 7112
Affinity Capture-MS Homo sapiens
52 TUSC3 7991
Affinity Capture-MS Homo sapiens
53 SELT 51714
Affinity Capture-MS Homo sapiens
54 DHCR7 1717
Affinity Capture-MS Homo sapiens
55 LMNB1 4001
Proximity Label-MS Homo sapiens
56 PON2 5445
Affinity Capture-MS Homo sapiens
57 MARCH8  
Affinity Capture-MS Homo sapiens
58 BCAP31 10134
Proximity Label-MS Homo sapiens
59 TMEM199  
Affinity Capture-MS Homo sapiens
60 ATP6AP2 10159
Affinity Capture-MS Homo sapiens
61 FKBP8 23770
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
62 ATP1B3 483
Affinity Capture-MS Homo sapiens
63 CYP51A1 1595
Affinity Capture-MS Homo sapiens
64 TMEM173  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
65 RETSAT 54884
Affinity Capture-MS Homo sapiens
66 ALG8  
Affinity Capture-MS Homo sapiens
67 TMEM237 65062
Affinity Capture-MS Homo sapiens
68 RPA3 6119
Proximity Label-MS Homo sapiens
69 TMCO1 54499
Affinity Capture-MS Homo sapiens
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Cross-Linking-MS (XL-MS) Homo sapiens
70 NCLN 56926
Affinity Capture-Western Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
71 ILK 3611
Affinity Capture-MS Homo sapiens
72 CYP2C9  
Proximity Label-MS Homo sapiens
73 CEPT1 10390
Affinity Capture-MS Homo sapiens
74 TMX2 51075
Affinity Capture-MS Homo sapiens
75 RPS16 6217
Affinity Capture-MS Homo sapiens
76 SLC4A2 6522
Affinity Capture-MS Homo sapiens
77 TTC13  
Affinity Capture-MS Homo sapiens
78 NAAA  
Affinity Capture-MS Homo sapiens
79 TIA1 7072
Affinity Capture-MS Homo sapiens
80 TMEM57  
Affinity Capture-MS Homo sapiens
81 EMC7 56851
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
82 ASIC4  
Affinity Capture-MS Homo sapiens
83 CLPTM1 1209
Affinity Capture-MS Homo sapiens
84 EMC4 51234
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
85 ALG6  
Affinity Capture-MS Homo sapiens
86 MGST1 4257
Affinity Capture-MS Homo sapiens
87 RAB2A 5862
Proximity Label-MS Homo sapiens
88 RAB11A 8766
Proximity Label-MS Homo sapiens
89 DHFRL1  
Proximity Label-MS Homo sapiens
90 EI24  
Affinity Capture-MS Homo sapiens
91 CISD2 493856
Affinity Capture-MS Homo sapiens
92 P2RX2  
Affinity Capture-MS Homo sapiens
93 TAP1 6890
Affinity Capture-MS Homo sapiens
94 WFS1 7466
Affinity Capture-MS Homo sapiens
95 BRI3BP 140707
Affinity Capture-MS Homo sapiens
96 SEC61A1 29927
Affinity Capture-MS Homo sapiens
97 HNRNPH1 3187
Affinity Capture-RNA Homo sapiens
98 HMOX1 3162
Affinity Capture-MS Homo sapiens
99 SPRTN  
Affinity Capture-MS Homo sapiens
100 SACM1L 22908
Affinity Capture-MS Homo sapiens
101 LAMP3  
Proximity Label-MS Homo sapiens
102 GJA1 2697
Proximity Label-MS Homo sapiens
103 ARL6IP5 10550
Affinity Capture-MS Homo sapiens
104 HIST1H2BG 8339
Proximity Label-MS Homo sapiens
105 SRPR 6734
Affinity Capture-MS Homo sapiens
106 OIT3 170392
Affinity Capture-MS Homo sapiens
107 FFAR1  
Affinity Capture-MS Homo sapiens
108 FIS1 51024
Proximity Label-MS Homo sapiens
109 GP1BB 2812
Affinity Capture-MS Homo sapiens
110 CYB5B 80777
Co-fractionation Homo sapiens
111 ELOVL7 79993
Affinity Capture-MS Homo sapiens
112 CLN3 1201
Affinity Capture-MS Homo sapiens
113 TMED2 10959
Affinity Capture-MS Homo sapiens
114 NR4A1  
Affinity Capture-MS Homo sapiens
115 SEC11C 90701
Affinity Capture-MS Homo sapiens
116 LMAN1 3998
Proximity Label-MS Homo sapiens
117 KIAA1715 80856
Proximity Label-MS Homo sapiens
118 EMC10 284361
Affinity Capture-MS Homo sapiens
119 AMFR 267
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
120 DRG1 4733
Affinity Capture-MS Homo sapiens
121 MSX2  
Affinity Capture-MS Homo sapiens
122 PSMD14 10213
Affinity Capture-MS Homo sapiens
123 NOMO3 408050
Affinity Capture-MS Homo sapiens
124 PREB 10113
Affinity Capture-MS Homo sapiens
125 Ksr1  
Affinity Capture-MS Mus musculus
126 TIRAP  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
127 SGPL1 8879
Affinity Capture-MS Homo sapiens
128 APLNR  
Affinity Capture-MS Homo sapiens
129 TMED9 54732
Affinity Capture-MS Homo sapiens
130 RPN2 6185
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
131 CANX 821
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
132 EMC8 10328
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
133 RAB5A 5868
Proximity Label-MS Homo sapiens
134 SLC27A4 10999
Affinity Capture-MS Homo sapiens
135 EGFR 1956
Affinity Capture-MS Homo sapiens
136 TMEM194A  
Affinity Capture-MS Homo sapiens
137 RIPK4  
Affinity Capture-MS Homo sapiens
138 RFT1 91869
Affinity Capture-MS Homo sapiens
139 CNR2  
Affinity Capture-MS Homo sapiens
140 ATP2A1 487
Proximity Label-MS Homo sapiens
141 VRK2 7444
Affinity Capture-MS Homo sapiens
142 DDRGK1 65992
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
143 RAB5C 5878
Proximity Label-MS Homo sapiens
144 LMNA 4000
Proximity Label-MS Homo sapiens
145 HUWE1 10075
Affinity Capture-MS Homo sapiens
146 OST4  
Affinity Capture-MS Homo sapiens
147 TPCN1 53373
Affinity Capture-MS Homo sapiens
148 EMC6 83460
Affinity Capture-MS Homo sapiens
149 SLC38A2 54407
Affinity Capture-MS Homo sapiens
150 PGRMC1 10857
Affinity Capture-MS Homo sapiens
151 Atp7a  
Affinity Capture-MS Mus musculus
152 TMEM214 54867
Affinity Capture-MS Homo sapiens
153 CALU 813
Proximity Label-MS Homo sapiens
154 SEC11A 23478
Affinity Capture-MS Homo sapiens
155 SRP19 6728
Affinity Capture-MS Homo sapiens
156 PIGU 128869
Affinity Capture-MS Homo sapiens
157 TOR1AIP1 26092
Affinity Capture-MS Homo sapiens
158 MMGT1 93380
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
159 DNAJC14  
Affinity Capture-MS Homo sapiens
160 ERGIC2 51290
Proximity Label-MS Homo sapiens
161 ATP1A1 476
Affinity Capture-MS Homo sapiens
162 TMEM109 79073
Affinity Capture-MS Homo sapiens
163 Ranbp2  
Affinity Capture-MS Mus musculus
164 KRAS 3845
Proximity Label-MS Homo sapiens
165 CYCS 54205
Cross-Linking-MS (XL-MS) Homo sapiens
166 CKAP4 10970
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
167 DERL1 79139
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
168 CALR3  
Proximity Label-MS Homo sapiens
169 ATP13A1 57130
Affinity Capture-MS Homo sapiens
170 RNF139  
Affinity Capture-MS Homo sapiens
171 RAB1A 5861
Co-fractionation Homo sapiens
172 EEF1G 1937
Cross-Linking-MS (XL-MS) Homo sapiens
173 MARCKS 4082
Proximity Label-MS Homo sapiens
174 TPP1 1200
Affinity Capture-MS Homo sapiens
175 TMEM147 10430
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
176 TMUB1  
Affinity Capture-MS Homo sapiens
177 BNIP1 662
Affinity Capture-MS Homo sapiens
178 PYCR1 5831
Co-fractionation Homo sapiens
179 PTPN1 5770
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
180 STX4 6810
Proximity Label-MS Homo sapiens
181 LRPPRC 10128
Affinity Capture-MS Homo sapiens
182 PTDSS2 81490
Affinity Capture-MS Homo sapiens
183 TEX264 51368
Affinity Capture-MS Homo sapiens
184 RNF5  
Affinity Capture-MS Homo sapiens
185 COPB2 9276
Affinity Capture-MS Homo sapiens
186 RHBDD2  
Affinity Capture-MS Homo sapiens
187 RAB3B 5865
Proximity Label-MS Homo sapiens
188 SSR1 6745
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
189 DERL2 51009
Affinity Capture-MS Homo sapiens
190 C20orf24  
Affinity Capture-MS Homo sapiens
191 ATG16L1 55054
Affinity Capture-MS Homo sapiens
192 MXRA7 439921
Affinity Capture-MS Homo sapiens
193 ESYT2 57488
Affinity Capture-MS Homo sapiens
194 CYBRD1 79901
Affinity Capture-MS Homo sapiens
195 METTL7A 25840
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
196 Tnpo1 238799
Affinity Capture-MS Mus musculus
197 NUP155 9631
Proximity Label-MS Homo sapiens
198 PXMP2  
Proximity Label-MS Homo sapiens
199 IRAK1  
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
200 PARK2  
Affinity Capture-MS Homo sapiens
201 CXADR 1525
Proximity Label-MS Homo sapiens
202 RAB4A 5867
Proximity Label-MS Homo sapiens
203 PLA1A  
Affinity Capture-MS Homo sapiens
204 NTRK1 4914
Affinity Capture-MS Homo sapiens
205 TRAM1 23471
Affinity Capture-MS Homo sapiens
206 GPR182  
Affinity Capture-MS Homo sapiens
207 RDH11 51109
Affinity Capture-MS Homo sapiens
208 RPN1 6184
Co-fractionation Homo sapiens
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
209 TECR 9524
Affinity Capture-MS Homo sapiens
210 SEC61G 23480
Affinity Capture-MS Homo sapiens
211 TMEM33 55161
Affinity Capture-MS Homo sapiens
212 C17orf62 79415
Affinity Capture-MS Homo sapiens
213 RMDN3 55177
Proximity Label-MS Homo sapiens
214 GPAA1 8733
Affinity Capture-MS Homo sapiens
215 EMC3 55831
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
216 DNAJB12 54788
Affinity Capture-MS Homo sapiens
217 MSMO1 6307
Affinity Capture-MS Homo sapiens
218 SARM1 23098
Affinity Capture-MS Homo sapiens
Reconstituted Complex Homo sapiens
219 MGARP  
Affinity Capture-MS Homo sapiens
220 ICMT  
Affinity Capture-MS Homo sapiens
221 NR3C1 2908
Proximity Label-MS Homo sapiens
222 STIM1 6786
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
223 FICD  
Affinity Capture-MS Homo sapiens
224 DCAKD 79877
Affinity Capture-MS Homo sapiens
225 LRRC8E 80131
Affinity Capture-MS Homo sapiens
226 SLC38A10 124565
Affinity Capture-MS Homo sapiens
227 CNIH4  
Affinity Capture-MS Homo sapiens
228 EMC2 9694
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
229 RAB9A 9367
Proximity Label-MS Homo sapiens
230 RPL22 6146
Cross-Linking-MS (XL-MS) Homo sapiens
231 HYOU1 10525
Affinity Capture-MS Homo sapiens
232 MAGT1 84061
Affinity Capture-MS Homo sapiens
233 ALG9 79796
Affinity Capture-MS Homo sapiens
234 MBOAT7 79143
Affinity Capture-MS Homo sapiens
235 PLEKHA4 57664
Affinity Capture-MS Homo sapiens
236 PHB2 11331
Co-fractionation Homo sapiens
237 ALDH3A2 224
Affinity Capture-MS Homo sapiens
238 FBXL6  
Affinity Capture-MS Homo sapiens
239 TXNDC15  
Affinity Capture-MS Homo sapiens
240 ERLIN1 10613
Affinity Capture-MS Homo sapiens
241 PHLDA3 23612
Affinity Capture-MS Homo sapiens
242 EDEM1  
Affinity Capture-MS Homo sapiens
243 ERLIN2 11160
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
244 UNC93B1 81622
Affinity Capture-MS Homo sapiens
245 PDIA4 9601
Proximity Label-MS Homo sapiens
246 ERGIC1 57222
Proximity Label-MS Homo sapiens
247 TMBIM4  
Affinity Capture-MS Homo sapiens
248 UFL1 23376
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
249 TBRG4 9238
Affinity Capture-MS Homo sapiens
250 RAB7A 7879
Proximity Label-MS Homo sapiens
251 TMEM38B  
Affinity Capture-MS Homo sapiens
252 SERBP1 26135
Affinity Capture-MS Homo sapiens
253 STT3B 201595
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
254 CLPTM1L 81037
Affinity Capture-MS Homo sapiens
255 SPCS2 9789
Affinity Capture-MS Homo sapiens
256 DNAJC22  
Proximity Label-MS Homo sapiens
257 PAQR7  
Affinity Capture-MS Homo sapiens
258 UBE2H 7328
Affinity Capture-MS Homo sapiens
259 HSD17B11 51170
Proximity Label-MS Homo sapiens
260 POR 5447
Affinity Capture-MS Homo sapiens
261 ANKLE2 23141
Affinity Capture-MS Homo sapiens
262 DPY19L4  
Affinity Capture-MS Homo sapiens
263 TMEM161A  
Affinity Capture-MS Homo sapiens
264 VAPA 9218
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
265 CTDNEP1 23399
Proximity Label-MS Homo sapiens
266 THOC2 57187
Cross-Linking-MS (XL-MS) Homo sapiens
267 LAMP2 3920
Proximity Label-MS Homo sapiens
268 DNAJC25 548645
Affinity Capture-MS Homo sapiens
Proximity Label-MS Homo sapiens
269 SLC12A2 6558
Affinity Capture-MS Homo sapiens
270 UBE2G2  
Affinity Capture-MS Homo sapiens
271 B3GAT1  
Proximity Label-MS Homo sapiens
272 C4orf3  
Affinity Capture-MS Homo sapiens
273 COPS5 10987
Affinity Capture-MS Homo sapiens
274 FBXW7  
Affinity Capture-MS Homo sapiens
275 STX7 8417
Proximity Label-MS Homo sapiens
276 SLC27A2 11001
Affinity Capture-MS Homo sapiens
277 STX18 53407
Affinity Capture-MS Homo sapiens
278 DDOST 1650
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
279 TOM1L1 10040
Two-hybrid Homo sapiens
280 PGRMC2 10424
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
281 DNAJC16  
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
282 NFXL1 152518
Affinity Capture-MS Homo sapiens
283 SRP68 6730
Affinity Capture-MS Homo sapiens
284 KIF2C 11004
Cross-Linking-MS (XL-MS) Homo sapiens
285 FBXL20 84961
Affinity Capture-MS Homo sapiens
286 RAB35 11021
Proximity Label-MS Homo sapiens
287 SSR3 6747
Affinity Capture-MS Homo sapiens
288 FAM20C 56975
Affinity Capture-MS Homo sapiens
289 Lima1  
Affinity Capture-MS Mus musculus
290 RER1 11079
Affinity Capture-MS Homo sapiens
291 RAB1B 81876
Co-fractionation Homo sapiens
292 LRRC59 55379
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
293 YIPF6 286451
Affinity Capture-MS Homo sapiens
294 IKBIP 121457
Affinity Capture-MS Homo sapiens
295 EMD 2010
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
296 ECT2 1894
Affinity Capture-MS Homo sapiens
297 RB1CC1 9821
Affinity Capture-MS Homo sapiens
298 TBL2 26608
Affinity Capture-MS Homo sapiens
299 FCN3 8547
Affinity Capture-MS Homo sapiens
300 NIPA1  
Affinity Capture-MS Homo sapiens
301 CYB5A 1528
Affinity Capture-MS Homo sapiens
302 MOGS 7841
Affinity Capture-MS Homo sapiens
303 STX6 10228
Proximity Label-MS Homo sapiens
304 LMF2 91289
Affinity Capture-MS Homo sapiens
305 TMX4 56255
Affinity Capture-MS Homo sapiens
306 DNAJC30  
Proximity Label-MS Homo sapiens
307 RHOT2 89941
Proximity Label-MS Homo sapiens
308 ELOVL5 60481
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
309 SEC63 11231
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
310 RHBDD1 84236
Affinity Capture-MS Homo sapiens
311 MBOAT2  
Affinity Capture-MS Homo sapiens
312 HSD3B7 80270
Proximity Label-MS Homo sapiens
313 VAPB 9217
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
314 CUL3 8452
Affinity Capture-MS Homo sapiens
Affinity Capture-MS Homo sapiens
315 PANX1 24145
Proximity Label-MS Homo sapiens
316 WDR83OS  
Affinity Capture-MS Homo sapiens
317 HMOX2 3163
Affinity Capture-MS Homo sapiens
318 LAMP1 3916
Proximity Label-MS Homo sapiens
319 DAD1 1603
Affinity Capture-MS Homo sapiens
320 TMEM258  
Affinity Capture-MS Homo sapiens
321 ARF6 382
Proximity Label-MS Homo sapiens
322 TMX3 54495
Affinity Capture-MS Homo sapiens
323 FDFT1 2222
Affinity Capture-MS Homo sapiens
324 ACSL3 2181
Affinity Capture-MS Homo sapiens
325 GPR45  
Affinity Capture-MS Homo sapiens
326 ASPH 444
Affinity Capture-MS Homo sapiens
327 FNDC3A 22862
Affinity Capture-MS Homo sapiens
328 SCD 6319
Affinity Capture-MS Homo sapiens
329 CLTC 1213
Co-fractionation Homo sapiens
330 NAT14 57106
Affinity Capture-MS Homo sapiens
331 IRF3 3661
Affinity Capture-MS Homo sapiens
332 DOCK3  
Affinity Capture-MS Homo sapiens
333 LBR 3930
Affinity Capture-MS Homo sapiens
334 ARV1  
Affinity Capture-MS Homo sapiens
335 RRBP1 6238
Affinity Capture-MS Homo sapiens
336 CCDC167  
Affinity Capture-MS Homo sapiens
337 UBXN4 23190
Affinity Capture-MS Homo sapiens
338 DNAJC19 131118
Affinity Capture-MS Homo sapiens
339 MFSD4  
Affinity Capture-MS Homo sapiens
340 TPTE  
Proximity Label-MS Homo sapiens
341 TYW1  
Affinity Capture-MS Homo sapiens
342 PIGK 10026
Affinity Capture-MS Homo sapiens
343 MIA2  
Affinity Capture-MS Homo sapiens
344 HDAC1 3065
Cross-Linking-MS (XL-MS) Homo sapiens
345 ATP2A2 488
Affinity Capture-MS Homo sapiens
346 SOAT1 6646
Affinity Capture-MS Homo sapiens
347 SPCS1 28972
Affinity Capture-MS Homo sapiens
348 SEC62 7095
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
349 CDK5RAP3 80279
Affinity Capture-MS Homo sapiens
350 MOSPD2 158747
Affinity Capture-MS Homo sapiens
351 DNAJC1 64215
Proximity Label-MS Homo sapiens
Affinity Capture-MS Homo sapiens
352 C9orf72  
Affinity Capture-MS Homo sapiens
353 PSPC1 55269
Affinity Capture-MS Homo sapiens
354 ESYT1 23344
Affinity Capture-MS Homo sapiens
View the network image/svg+xml
 Pathways in which CCDC47 is involved
No pathways found





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